Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 799
95 % 36 68 630
90 % 36 68 658
70 % 36 68 695
50 % 36 165 207
40 % 36 165 228
30 % 44 492 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57423
95 % 1 1 40003
90 % 1 1 38094
70 % 36 68 687
50 % 36 161 215
40 % 36 161 237
30 % 36 161 246
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 374
95 % 36 74 538
90 % 36 74 578
70 % 36 74 610
50 % 36 74 663
40 % 36 74 706
30 % 43 478 36
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 371
95 % 36 74 535
90 % 36 74 576
70 % 36 74 607
50 % 36 76 643
40 % 36 76 688
30 % 36 79 663
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 445
95 % 36 68 631
90 % 36 68 660
70 % 36 68 697
50 % 36 70 717
40 % 36 70 756
30 % 36 70 758
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2109
95 % 36 68 629
90 % 36 68 657
70 % 36 68 693
50 % 36 68 747
40 % 36 72 728
30 % 36 72 726
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 447
95 % 36 68 634
90 % 36 68 662
70 % 36 68 700
50 % 36 70 718
40 % 36 70 757
30 % 36 71 742
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 457
95 % 36 68 627
90 % 36 68 655
70 % 36 68 690
50 % 36 68 744
40 % 36 68 776
30 % 36 164 236
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 380
95 % 36 74 543
90 % 36 74 583
70 % 36 74 618
50 % 36 76 646
40 % 36 78 665
30 % 43 396 56
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 379
95 % 36 74 542
90 % 36 74 582
70 % 36 74 617
50 % 36 169 202
40 % 36 169 223
30 % 36 169 231
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 420
95 % 34 70 603
90 % 34 70 634
70 % 34 70 667
50 % 34 70 720
40 % 34 70 760
30 % 34 70 761
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 381
95 % 36 74 544
90 % 36 74 584
70 % 36 74 619
50 % 36 74 667
40 % 36 74 709
30 % 36 74 708
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 441
95 % 36 68 628
90 % 36 68 656
70 % 36 68 691
50 % 36 68 745
40 % 36 70 753
30 % 36 71 740
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 449
95 % 36 68 636
90 % 36 68 664
70 % 36 68 702
50 % 36 68 751
40 % 36 68 780
30 % 36 68 783
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60704
95 % 3 5 13581
90 % 3 5 13337
70 % 3 5 12515
50 % 3 5 11186
40 % 3 5 10154
30 % 3 5 8815
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66925
95 % 1 1 46366
90 % 1 1 44112
70 % 3 21 2776
50 % 7 30 1854
40 % 7 118 316
30 % 26 141 271
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 638
90 % 36 68 665
70 % 36 68 704
50 % 36 69 730
40 % 36 69 770
30 % 36 69 774
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68310
95 % 36 68 639
90 % 36 68 666
70 % 36 68 706
50 % 36 162 213
40 % 36 162 236
30 % 36 162 241
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 635
90 % 36 68 663
70 % 36 68 701
50 % 36 68 750
40 % 36 68 779
30 % 36 158 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 440
95 % 36 68 626
90 % 36 68 654
70 % 36 68 689
50 % 36 68 742
40 % 36 163 231
30 % 44 483 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2089
95 % 36 68 623
90 % 36 68 651
70 % 36 68 686
50 % 36 160 214
40 % 36 162 233
30 % 36 162 238
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50803
95 % 36 74 530
90 % 36 74 570
70 % 36 74 602
50 % 36 74 656
40 % 36 169 220
30 % 36 169 228
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9580
95 % 36 74 532
90 % 36 74 572
70 % 36 74 606
50 % 36 74 659
40 % 36 76 686
30 % 36 77 681
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 372
95 % 36 74 536
90 % 36 74 577
70 % 36 74 608
50 % 36 74 661
40 % 37 169 222
30 % 37 169 229
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2119
95 % 3 21 2745
90 % 36 68 659
70 % 36 68 696
50 % 51 105 308
40 % 58 120 279
30 % 58 122 278
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59639
95 % 1 1 41239
90 % 1 7 9677
70 % 3 27 2053
50 % 36 74 662
40 % 36 79 653
30 % 36 79 666
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 375
95 % 36 74 539
90 % 36 74 579
70 % 36 74 613
50 % 36 74 666
40 % 37 77 677
30 % 37 78 673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 5 C 50S ribosomal protein L4P 2238
2 1VQO 6 C 50S ribosomal protein L4E 2238
3 1VQ8 6 C 50S ribosomal protein L4E 2238
4 1S72 5 C 50S ribosomal protein L4E 2238
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
6 1YHQ 5 C 50S ribosomal protein L4E 2238
7 1VQP 6 C 50S ribosomal protein L4E 2238
8 1VQM 6 C 50S ribosomal protein L4E 2238
9 3CC2 3 C 50S ribosomal protein L4P 2238
10 1VQL 6 C 50S ribosomal protein L4E 2238
11 1VQK 6 C 50S ribosomal protein L4E 2238
12 1VQN 7 C 50S ribosomal protein L4E 2238
13 1YIJ 5 C 50S ribosomal protein L4E 2238
14 1YI2 5 C 50S ribosomal protein L4E 2238
15 1VQ9 6 C 50S ribosomal protein L4E 2238
16 1VQ7 6 C 50S ribosomal protein L4E 2238
17 3CCM 3 C 50S ribosomal protein L4P 2238
18 1VQ5 6 C 50S ribosomal protein L4E 2238
19 3CCJ 3 C 50S ribosomal protein L4P 2238
20 3CC7 3 C 50S ribosomal protein L4P 2238
21 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
22 3CCE 3 C 50S ribosomal protein L4P 2238
23 3G6E 4 C 50S ribosomal protein L4P 2238
24 3CPW 5 C 50S ribosomal protein L4P 2238
25 3CCU 3 C 50S ribosomal protein L4P 2238
26 1VQ6 7 C 50S ribosomal protein L4E 2238
27 1M90 6 E RIBOSOMAL PROTEIN L4 2238
28 3CCL 3 C 50S ribosomal protein L4P 2238
29 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
30 1YJ9 5 C 50S ribosomal protein L4E 2238
31 3CD6 3 C 50S ribosomal protein L4P 2238
32 3CCV 3 C 50S ribosomal protein L4P 2238
33 3CC4 3 C 50S ribosomal protein L4P 2238
34 2OTL 5 C 50S ribosomal protein L4P 2238
35 3G71 4 C 50S ribosomal protein L4P 2238
36 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
37 1VQ4 6 C 50S ribosomal protein L4E 2238
38 1YJN 5 C 50S ribosomal protein L4E 2238
39 3CMA 3 C 50S ribosomal protein L4P 2238
40 3CCS 3 C 50S ribosomal protein L4P 2238
41 3CCQ 3 C 50S ribosomal protein L4P 2238
42 3I56 3 C 50S ribosomal protein L4P 2238
43 3CCR 3 C 50S ribosomal protein L4P 2238
44 2OTJ 5 C 50S ribosomal protein L4P 2238
45 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
46 3OW2 5 C 50S ribosomal protein L4P 2238
47 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
48 1QVG 6 C 50S ribosomal protein L4E 2238
49 3CME 3 C 50S ribosomal protein L4P 2238
50 2QEX 5 C 50S ribosomal protein L4P 2238
51 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
52 1N8R 5 E 50S ribosomal protein L4E 2238
53 1Q81 6 E 50S ribosomal protein L4E 2238
54 1Q82 6 E 50S ribosomal protein L4E 2238
55 1QVF 6 C 50S ribosomal protein L4E 2238
56 1NJI 5 E 50S ribosomal protein L4E 2238
57 1K73 5 E RIBOSOMAL PROTEIN L4 2238
58 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
59 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
60 3I55 4 C 50S ribosomal protein L4P 2238
61 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
62 1Q86 6 E 50S ribosomal protein L4E 2238
63 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
64 3G4S 4 C 50S ribosomal protein L4P 2238
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
66 2QA4 5 C 50S ribosomal protein L4P 2238
67 1Q7Y 6 E 50S ribosomal protein L4E 2238
68 4V4P 6 AF 50S ribosomal protein L4 274
69 4V4R 30 BF 50S ribosomal protein L4 274
70 4V4S 30 BF 50S ribosomal protein L4 274
71 4V4T 29 BF 50S ribosomal protein L4 274
72 4ADX 13 C RPL4 145262
73 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
74 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274