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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 445 Members. Sequence cutoff: 70% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 5 C 50S ribosomal protein L4P 272569  
2 1VQO 6 C 50S ribosomal protein L4E 2238  
3 1VQ8 6 C 50S ribosomal protein L4E 2238  
4 1S72 5 C 50S ribosomal protein L4E 2238  
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238  
6 1YHQ 5 C 50S ribosomal protein L4E 2238  
7 1VQP 6 C 50S ribosomal protein L4E 2238  
8 1VQM 6 C 50S ribosomal protein L4E 2238  
9 3CC2 3 C 50S ribosomal protein L4P 2238  
10 1VQL 6 C 50S ribosomal protein L4E 2238  
11 1VQK 6 C 50S ribosomal protein L4E 2238  
12 1VQN 7 C 50S ribosomal protein L4E 2238  
13 1YIJ 5 C 50S ribosomal protein L4E 2238  
14 1YI2 5 C 50S ribosomal protein L4E 2238  
15 1VQ9 6 C 50S ribosomal protein L4E 2238  
16 1VQ7 6 C 50S ribosomal protein L4E 2238  
17 3CCM 3 C 50S ribosomal protein L4P 2238  
18 1VQ5 6 C 50S ribosomal protein L4E 2238  
19 3CCJ 3 C 50S ribosomal protein L4P 2238  
20 3CC7 3 C 50S ribosomal protein L4P 2238  
21 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238  
22 3CCE 3 C 50S ribosomal protein L4P 2238  
23 3G6E 4 C 50S ribosomal protein L4P 2238  
24 3CPW 5 C 50S ribosomal protein L4P 2238  
25 3CCU 3 C 50S ribosomal protein L4P 2238  
26 1VQ6 7 C 50S ribosomal protein L4E 2238  
27 1M90 6 E RIBOSOMAL PROTEIN L4 2238  
28 3CCL 3 C 50S ribosomal protein L4P 2238  
29 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238  
30 1YJ9 5 C 50S ribosomal protein L4E 2238  
31 3CD6 3 C 50S ribosomal protein L4P 2238  
32 3CCV 3 C 50S ribosomal protein L4P 2238  
33 3CC4 3 C 50S ribosomal protein L4P 2238  
34 2OTL 5 C 50S ribosomal protein L4P 2238  
35 3G71 4 C 50S ribosomal protein L4P 2238  
36 1FFK 5 C RIBOSOMAL PROTEIN L4 2238  
37 1VQ4 6 C 50S ribosomal protein L4E 2238  
38 1YJN 5 C 50S ribosomal protein L4E 2238  
39 3CMA 3 C 50S ribosomal protein L4P 2238  
40 3CCS 3 C 50S ribosomal protein L4P 2238  
41 3CCQ 3 C 50S ribosomal protein L4P 2238  
42 3I56 3 C 50S ribosomal protein L4P 2238  
43 3CCR 3 C 50S ribosomal protein L4P 2238  
44 2OTJ 5 C 50S ribosomal protein L4P 2238  
45 1KQS 7 C RIBOSOMAL PROTEIN L4 2238  
46 3OW2 5 C 50S ribosomal protein L4P 2238  
47 3CXC 6 C RIBOSOMAL PROTEIN L4 2238  
48 1QVG 6 C 50S ribosomal protein L4E 2238  
49 3CME 3 C 50S ribosomal protein L4P 2238  
50 2QEX 5 C 50S ribosomal protein L4P 2238  
51 1KC8 5 E RIBOSOMAL PROTEIN L4 2238  
52 1N8R 5 E 50S ribosomal protein L4E 2238  
53 1Q81 6 E 50S ribosomal protein L4E 2238  
54 1Q82 6 E 50S ribosomal protein L4E 2238  
55 1QVF 6 C 50S ribosomal protein L4E 2238  
56 1NJI 5 E 50S ribosomal protein L4E 2238  
57 1K73 5 E RIBOSOMAL PROTEIN L4 2238  
58 1K9M 5 E RIBOSOMAL PROTEIN L4 2238  
59 1KD1 5 E RIBOSOMAL PROTEIN L4 2238  
60 3I55 4 C 50S ribosomal protein L4P 2238  
61 1K8A 5 E RIBOSOMAL PROTEIN L4 2238  
62 1Q86 6 E 50S ribosomal protein L4E 2238  
63 1M1K 5 E RIBOSOMAL PROTEIN L4 2238  
64 3G4S 4 C 50S ribosomal protein L4P 2238  
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238  
66 2QA4 5 C 50S ribosomal protein L4P 2238  
67 1Q7Y 6 E 50S ribosomal protein L4E 2238  
68 1YL3 6 F 50S ribosomal protein L4 300852  
69 2B66 5 F 50S ribosomal protein L4 274  
70 2B9N 5 F 50S ribosomal protein L4 274  
71 2B9P 5 F 50S ribosomal protein L4 274  
72 4ADX 13 C RPL4 187420  
73 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562  
74 1GIY 6 F 50S RIBOSOMAL PROTEIN L4 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 551
95% 36 68 454
90% 36 68 478
70% 36 68 510
50% 36 105 324
40% 36 105 346
30% 39 415 54
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46959
95% 1 1 32990
90% 1 1 31568
70% 36 68 502
50% 36 103 335
40% 36 103 357
30% 36 103 368
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 279
95% 36 74 397
90% 36 74 423
70% 36 74 448
50% 36 74 496
40% 36 74 527
30% 38 407 61
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 395
90% 36 74 421
70% 36 74 446
50% 36 76 479
40% 36 76 508
30% 36 78 502
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 456
90% 36 68 481
70% 36 68 513
50% 36 70 535
40% 36 70 562
30% 36 70 567
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1546
95% 36 68 452
90% 36 68 476
70% 36 68 508
50% 36 68 558
40% 36 70 561
30% 36 71 552
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 458
90% 36 68 483
70% 36 68 515
50% 36 70 537
40% 36 70 565
30% 36 71 554
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 331
95% 36 68 450
90% 36 68 474
70% 36 68 506
50% 36 68 555
40% 36 68 586
30% 36 106 352
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 400
90% 36 74 426
70% 36 74 451
50% 36 76 480
40% 36 78 490
30% 38 382 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 399
90% 36 74 425
70% 36 74 450
50% 36 112 288
40% 36 112 312
30% 36 112 328
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 305
95% 34 70 434
90% 34 70 455
70% 34 70 485
50% 34 70 538
40% 34 70 566
30% 34 70 568
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 401
90% 36 74 427
70% 36 74 452
50% 36 74 498
40% 36 74 529
30% 36 74 531
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 475
70% 36 68 507
50% 36 68 556
40% 36 70 560
30% 36 71 551
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 460
90% 36 68 485
70% 36 68 517
50% 36 68 562
40% 36 68 591
30% 36 68 588
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49872
95% 3 5 11050
90% 3 5 10871
70% 3 5 10289
50% 3 5 9240
40% 3 5 8429
30% 3 5 7404
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55418
95% 1 1 38705
90% 1 1 37040
70% 3 21 2141
50% 7 30 1458
40% 7 58 703
30% 26 81 483
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 462
90% 36 68 487
70% 36 68 519
50% 36 69 550
40% 36 69 581
30% 36 69 582
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56677
95% 36 68 463
90% 36 68 488
70% 36 68 520
50% 36 105 327
40% 36 105 348
30% 36 105 360
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 459
90% 36 68 484
70% 36 68 516
50% 36 68 561
40% 36 68 590
30% 36 104 364
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 449
90% 36 68 473
70% 36 68 505
50% 36 68 554
40% 36 104 352
30% 39 410 58
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1529
95% 35 67 467
90% 35 67 492
70% 35 67 526
50% 35 102 337
40% 35 104 350
30% 35 104 362
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41386
95% 36 74 390
90% 36 74 417
70% 36 74 443
50% 36 74 491
40% 36 109 319
30% 36 109 333
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7556
95% 36 74 393
90% 36 74 419
70% 36 74 445
50% 36 74 493
40% 36 76 507
30% 36 77 508
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 278
95% 36 74 396
90% 36 74 422
70% 36 74 447
50% 36 74 494
40% 36 109 322
30% 36 109 336
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1557
95% 3 21 2066
90% 36 68 480
70% 36 68 512
50% 51 97 281
40% 57 106 274
30% 57 108 293
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48908
95% 1 1 34087
90% 1 7 7852
70% 3 27 1556
50% 36 74 495
40% 36 78 487
30% 36 78 504
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 398
90% 36 74 424
70% 36 74 449
50% 36 74 497
40% 37 77 499
30% 37 78 505
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.