Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 786
95 % 36 68 607
90 % 36 68 641
70 % 36 68 681
50 % 36 163 208
40 % 36 163 229
30 % 44 479 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56903
95 % 1 1 39657
90 % 1 1 37770
70 % 36 68 675
50 % 36 159 215
40 % 36 159 237
30 % 36 159 249
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 344
95 % 36 74 508
90 % 36 74 542
70 % 36 74 580
50 % 36 74 654
40 % 36 74 700
30 % 43 468 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 342
95 % 36 74 506
90 % 36 74 538
70 % 36 74 576
50 % 36 76 634
40 % 36 76 678
30 % 36 79 657
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 418
95 % 36 68 609
90 % 36 68 643
70 % 36 68 683
50 % 36 70 705
40 % 36 70 746
30 % 36 70 750
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2083
95 % 36 68 605
90 % 36 68 640
70 % 36 68 680
50 % 36 68 733
40 % 36 72 717
30 % 36 72 719
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 420
95 % 36 68 612
90 % 36 68 645
70 % 36 68 686
50 % 36 70 707
40 % 36 70 748
30 % 36 71 735
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 431
95 % 36 68 603
90 % 36 68 638
70 % 36 68 678
50 % 36 68 731
40 % 36 68 765
30 % 36 162 241
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 351
95 % 36 74 514
90 % 36 74 551
70 % 36 74 589
50 % 36 76 636
40 % 36 78 657
30 % 43 388 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 349
95 % 36 74 512
90 % 36 74 548
70 % 36 74 588
50 % 36 167 203
40 % 36 167 224
30 % 36 167 232
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 397
95 % 34 70 579
90 % 34 70 617
70 % 34 70 654
50 % 34 70 708
40 % 34 70 750
30 % 34 70 753
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 352
95 % 36 74 515
90 % 36 74 552
70 % 36 74 590
50 % 36 74 659
40 % 36 74 703
30 % 36 74 702
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 412
95 % 36 68 604
90 % 36 68 639
70 % 36 68 679
50 % 36 68 732
40 % 36 70 742
30 % 36 71 733
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 422
95 % 36 68 614
90 % 36 68 647
70 % 36 68 688
50 % 36 68 738
40 % 36 68 769
30 % 36 68 773
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60177
95 % 3 5 13444
90 % 3 5 13198
70 % 3 5 12404
50 % 3 5 11089
40 % 3 5 10075
30 % 3 5 8755
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66369
95 % 1 1 46000
90 % 1 1 43778
70 % 3 21 2737
50 % 7 30 1830
40 % 7 116 322
30 % 26 139 281
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 423
95 % 36 68 615
90 % 36 68 648
70 % 36 68 691
50 % 36 69 719
40 % 36 69 758
30 % 36 69 764
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67745
95 % 36 68 616
90 % 36 68 649
70 % 36 68 692
50 % 36 160 213
40 % 36 160 235
30 % 36 160 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 421
95 % 36 68 613
90 % 36 68 646
70 % 36 68 687
50 % 36 68 737
40 % 36 68 768
30 % 36 156 253
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 411
95 % 36 68 602
90 % 36 68 637
70 % 36 68 677
50 % 36 68 730
40 % 36 161 230
30 % 44 473 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2063
95 % 36 68 598
90 % 36 68 635
70 % 36 68 674
50 % 36 158 214
40 % 36 160 233
30 % 36 160 245
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50316
95 % 36 74 501
90 % 36 74 533
70 % 36 74 569
50 % 36 74 647
40 % 36 167 222
30 % 36 167 230
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9480
95 % 36 74 504
90 % 36 74 535
70 % 36 74 575
50 % 36 74 650
40 % 36 76 677
30 % 36 77 675
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 343
95 % 36 74 507
90 % 36 74 540
70 % 36 74 578
50 % 36 74 652
40 % 37 167 223
30 % 37 167 231
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2091
95 % 3 21 2709
90 % 36 68 642
70 % 36 68 682
50 % 51 104 303
40 % 58 118 276
30 % 58 120 284
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59113
95 % 1 1 40895
90 % 1 7 9594
70 % 3 27 2023
50 % 36 74 653
40 % 36 79 645
30 % 36 79 660
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 345
95 % 36 74 509
90 % 36 74 545
70 % 36 74 584
50 % 36 74 657
40 % 37 77 667
30 % 37 78 667

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 5 C 50S ribosomal protein L4P 2238
2 1VQO 6 C 50S ribosomal protein L4E 2238
3 1VQ8 6 C 50S ribosomal protein L4E 2238
4 1S72 5 C 50S ribosomal protein L4E 2238
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
6 1YHQ 5 C 50S ribosomal protein L4E 2238
7 1VQP 6 C 50S ribosomal protein L4E 2238
8 1VQM 6 C 50S ribosomal protein L4E 2238
9 3CC2 3 C 50S ribosomal protein L4P 2238
10 1VQL 6 C 50S ribosomal protein L4E 2238
11 1VQK 6 C 50S ribosomal protein L4E 2238
12 1VQN 7 C 50S ribosomal protein L4E 2238
13 1YIJ 5 C 50S ribosomal protein L4E 2238
14 1YI2 5 C 50S ribosomal protein L4E 2238
15 1VQ9 6 C 50S ribosomal protein L4E 2238
16 1VQ7 6 C 50S ribosomal protein L4E 2238
17 3CCM 3 C 50S ribosomal protein L4P 2238
18 1VQ5 6 C 50S ribosomal protein L4E 2238
19 3CCJ 3 C 50S ribosomal protein L4P 2238
20 3CC7 3 C 50S ribosomal protein L4P 2238
21 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
22 3CCE 3 C 50S ribosomal protein L4P 2238
23 3G6E 4 C 50S ribosomal protein L4P 2238
24 3CPW 5 C 50S ribosomal protein L4P 2238
25 3CCU 3 C 50S ribosomal protein L4P 2238
26 1VQ6 7 C 50S ribosomal protein L4E 2238
27 1M90 6 E RIBOSOMAL PROTEIN L4 2238
28 3CCL 3 C 50S ribosomal protein L4P 2238
29 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
30 1YJ9 5 C 50S ribosomal protein L4E 2238
31 3CD6 3 C 50S ribosomal protein L4P 2238
32 3CCV 3 C 50S ribosomal protein L4P 2238
33 3CC4 3 C 50S ribosomal protein L4P 2238
34 2OTL 5 C 50S ribosomal protein L4P 2238
35 3G71 4 C 50S ribosomal protein L4P 2238
36 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
37 1VQ4 6 C 50S ribosomal protein L4E 2238
38 1YJN 5 C 50S ribosomal protein L4E 2238
39 3CMA 3 C 50S ribosomal protein L4P 2238
40 3CCS 3 C 50S ribosomal protein L4P 2238
41 3CCQ 3 C 50S ribosomal protein L4P 2238
42 3I56 3 C 50S ribosomal protein L4P 2238
43 3CCR 3 C 50S ribosomal protein L4P 2238
44 2OTJ 5 C 50S ribosomal protein L4P 2238
45 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
46 3OW2 5 C 50S ribosomal protein L4P 2238
47 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
48 1QVG 6 C 50S ribosomal protein L4E 2238
49 3CME 3 C 50S ribosomal protein L4P 2238
50 2QEX 5 C 50S ribosomal protein L4P 2238
51 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
52 1N8R 5 E 50S ribosomal protein L4E 2238
53 1Q81 6 E 50S ribosomal protein L4E 2238
54 1Q82 6 E 50S ribosomal protein L4E 2238
55 1QVF 6 C 50S ribosomal protein L4E 2238
56 1NJI 5 E 50S ribosomal protein L4E 2238
57 1K73 5 E RIBOSOMAL PROTEIN L4 2238
58 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
59 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
60 3I55 4 C 50S ribosomal protein L4P 2238
61 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
62 1Q86 6 E 50S ribosomal protein L4E 2238
63 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
64 3G4S 4 C 50S ribosomal protein L4P 2238
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
66 2QA4 5 C 50S ribosomal protein L4P 2238
67 1Q7Y 6 E 50S ribosomal protein L4E 2238
68 4V4P 6 AF 50S ribosomal protein L4 274
69 4V4R 30 BF 50S ribosomal protein L4 274
70 4V4S 30 BF 50S ribosomal protein L4 274
71 4V4T 29 BF 50S ribosomal protein L4 274
72 4ADX 13 C RPL4 145262
73 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
74 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274