Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 757
95 % 36 68 540
90 % 36 68 568
70 % 36 68 617
50 % 36 145 222
40 % 36 145 248
30 % 44 444 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55536
95 % 1 1 38764
90 % 1 1 36937
70 % 36 68 611
50 % 36 140 233
40 % 36 140 260
30 % 36 140 272
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 504
70 % 36 74 547
50 % 36 74 631
40 % 36 74 677
30 % 43 433 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 473
90 % 36 74 502
70 % 36 74 544
50 % 36 76 610
40 % 36 76 653
30 % 36 78 639
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 619
50 % 36 70 681
40 % 36 70 726
30 % 36 70 732
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1991
95 % 36 68 539
90 % 36 68 567
70 % 36 68 616
50 % 36 68 707
40 % 36 70 723
30 % 36 71 713
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 622
50 % 36 70 683
40 % 36 70 728
30 % 36 71 716
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 374
95 % 36 68 537
90 % 36 68 565
70 % 36 68 614
50 % 36 68 705
40 % 36 68 745
30 % 36 144 259
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 510
70 % 36 74 554
50 % 36 76 613
40 % 36 78 631
30 % 43 371 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 478
90 % 36 74 508
70 % 36 74 552
50 % 36 149 219
40 % 36 149 242
30 % 36 149 253
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 348
95 % 34 70 518
90 % 34 70 545
70 % 34 70 592
50 % 34 70 684
40 % 34 70 729
30 % 34 70 733
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 481
90 % 36 74 511
70 % 36 74 555
50 % 36 74 637
40 % 36 74 682
30 % 36 74 682
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 566
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 712
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 368
95 % 36 68 545
90 % 36 68 575
70 % 36 68 624
50 % 36 68 710
40 % 36 68 749
30 % 36 68 754
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58749
95 % 3 5 13117
90 % 3 5 12880
70 % 3 5 12117
50 % 3 5 10840
40 % 3 5 9867
30 % 3 5 8579
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64836
95 % 1 1 44989
90 % 1 1 42850
70 % 3 21 2636
50 % 7 30 1772
40 % 7 98 369
30 % 26 121 320
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 546
90 % 36 68 576
70 % 36 68 625
50 % 36 69 696
40 % 36 69 739
30 % 36 69 746
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66192
95 % 36 68 547
90 % 36 68 577
70 % 36 68 626
50 % 36 142 228
40 % 36 142 257
30 % 36 142 266
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 544
90 % 36 68 574
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 139 275
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 536
90 % 36 68 564
70 % 36 68 613
50 % 36 68 704
40 % 36 144 250
30 % 44 439 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1968
95 % 36 68 534
90 % 36 68 562
70 % 36 68 610
50 % 36 140 232
40 % 36 142 256
30 % 36 142 264
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49105
95 % 36 74 466
90 % 36 74 496
70 % 36 74 540
50 % 36 74 624
40 % 36 149 237
30 % 36 149 248
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9175
95 % 36 74 469
90 % 36 74 499
70 % 36 74 543
50 % 36 74 627
40 % 36 76 652
30 % 36 77 647
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 474
90 % 36 74 503
70 % 36 74 545
50 % 36 74 629
40 % 37 150 236
30 % 37 150 247
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2000
95 % 3 21 2587
90 % 36 68 569
70 % 36 68 618
50 % 51 98 344
40 % 58 112 314
30 % 58 114 325
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57705
95 % 1 1 39976
90 % 1 7 9334
70 % 3 27 1944
50 % 36 74 630
40 % 36 79 619
30 % 36 79 629
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 550
50 % 36 74 634
40 % 37 77 643
30 % 37 78 642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 5 C 50S ribosomal protein L4P 2238
2 1VQO 6 C 50S ribosomal protein L4E 2238
3 1VQ8 6 C 50S ribosomal protein L4E 2238
4 1S72 5 C 50S ribosomal protein L4E 2238
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
6 1YHQ 5 C 50S ribosomal protein L4E 2238
7 1VQP 6 C 50S ribosomal protein L4E 2238
8 1VQM 6 C 50S ribosomal protein L4E 2238
9 3CC2 3 C 50S ribosomal protein L4P 2238
10 1VQL 6 C 50S ribosomal protein L4E 2238
11 1VQK 6 C 50S ribosomal protein L4E 2238
12 1VQN 7 C 50S ribosomal protein L4E 2238
13 1YIJ 5 C 50S ribosomal protein L4E 2238
14 1YI2 5 C 50S ribosomal protein L4E 2238
15 1VQ9 6 C 50S ribosomal protein L4E 2238
16 1VQ7 6 C 50S ribosomal protein L4E 2238
17 3CCM 3 C 50S ribosomal protein L4P 2238
18 1VQ5 6 C 50S ribosomal protein L4E 2238
19 3CCJ 3 C 50S ribosomal protein L4P 2238
20 3CC7 3 C 50S ribosomal protein L4P 2238
21 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
22 3CCE 3 C 50S ribosomal protein L4P 2238
23 3G6E 4 C 50S ribosomal protein L4P 2238
24 3CPW 5 C 50S ribosomal protein L4P 2238
25 3CCU 3 C 50S ribosomal protein L4P 2238
26 1VQ6 7 C 50S ribosomal protein L4E 2238
27 1M90 6 E RIBOSOMAL PROTEIN L4 2238
28 3CCL 3 C 50S ribosomal protein L4P 2238
29 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
30 1YJ9 5 C 50S ribosomal protein L4E 2238
31 3CD6 3 C 50S ribosomal protein L4P 2238
32 3CCV 3 C 50S ribosomal protein L4P 2238
33 3CC4 3 C 50S ribosomal protein L4P 2238
34 2OTL 5 C 50S ribosomal protein L4P 2238
35 3G71 4 C 50S ribosomal protein L4P 2238
36 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
37 1VQ4 6 C 50S ribosomal protein L4E 2238
38 1YJN 5 C 50S ribosomal protein L4E 2238
39 3CMA 3 C 50S ribosomal protein L4P 2238
40 3CCS 3 C 50S ribosomal protein L4P 2238
41 3CCQ 3 C 50S ribosomal protein L4P 2238
42 3I56 3 C 50S ribosomal protein L4P 2238
43 3CCR 3 C 50S ribosomal protein L4P 2238
44 2OTJ 5 C 50S ribosomal protein L4P 2238
45 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
46 3OW2 5 C 50S ribosomal protein L4P 2238
47 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
48 1QVG 6 C 50S ribosomal protein L4E 2238
49 3CME 3 C 50S ribosomal protein L4P 2238
50 2QEX 5 C 50S ribosomal protein L4P 2238
51 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
52 1N8R 5 E 50S ribosomal protein L4E 2238
53 1Q81 6 E 50S ribosomal protein L4E 2238
54 1Q82 6 E 50S ribosomal protein L4E 2238
55 1QVF 6 C 50S ribosomal protein L4E 2238
56 1NJI 5 E 50S ribosomal protein L4E 2238
57 1K73 5 E RIBOSOMAL PROTEIN L4 2238
58 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
59 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
60 3I55 4 C 50S ribosomal protein L4P 2238
61 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
62 1Q86 6 E 50S ribosomal protein L4E 2238
63 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
64 3G4S 4 C 50S ribosomal protein L4P 2238
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
66 2QA4 5 C 50S ribosomal protein L4P 2238
67 1Q7Y 6 E 50S ribosomal protein L4E 2238
68 4V4P 6 AF 50S ribosomal protein L4 274
69 4V4R 30 BF 50S ribosomal protein L4 274
70 4V4S 30 BF 50S ribosomal protein L4 274
71 4V4T 29 BF 50S ribosomal protein L4 274
72 4V4N 46 AD 50S ribosomal protein L4P SEE REMARK 999 2190
73 4V6U 53 BD 50S ribosomal protein L4P 2261
74 4ADX 13 C RPL4 145262
75 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
76 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274