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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 572 Members. Sequence cutoff: 40% Cluster size: 76 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 5 C 50S ribosomal protein L4P 272569  
2 1VQO 6 C 50S ribosomal protein L4E 2238  
3 1VQ8 6 C 50S ribosomal protein L4E 2238  
4 1S72 5 C 50S ribosomal protein L4E 2238  
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238  
6 1YHQ 5 C 50S ribosomal protein L4E 2238  
7 1VQP 6 C 50S ribosomal protein L4E 2238  
8 1VQM 6 C 50S ribosomal protein L4E 2238  
9 3CC2 3 C 50S ribosomal protein L4P 2238  
10 1VQL 6 C 50S ribosomal protein L4E 2238  
11 1VQK 6 C 50S ribosomal protein L4E 2238  
12 1VQN 7 C 50S ribosomal protein L4E 2238  
13 1YIJ 5 C 50S ribosomal protein L4E 2238  
14 1YI2 5 C 50S ribosomal protein L4E 2238  
15 1VQ9 6 C 50S ribosomal protein L4E 2238  
16 1VQ7 6 C 50S ribosomal protein L4E 2238  
17 3CCM 3 C 50S ribosomal protein L4P 2238  
18 1VQ5 6 C 50S ribosomal protein L4E 2238  
19 3CCJ 3 C 50S ribosomal protein L4P 2238  
20 3CC7 3 C 50S ribosomal protein L4P 2238  
21 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238  
22 3CCE 3 C 50S ribosomal protein L4P 2238  
23 3G6E 4 C 50S ribosomal protein L4P 2238  
24 3CPW 5 C 50S ribosomal protein L4P 2238  
25 3CCU 3 C 50S ribosomal protein L4P 2238  
26 1VQ6 7 C 50S ribosomal protein L4E 2238  
27 1M90 6 E RIBOSOMAL PROTEIN L4 2238  
28 3CCL 3 C 50S ribosomal protein L4P 2238  
29 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238  
30 1YJ9 5 C 50S ribosomal protein L4E 2238  
31 3CD6 3 C 50S ribosomal protein L4P 2238  
32 3CCV 3 C 50S ribosomal protein L4P 2238  
33 3CC4 3 C 50S ribosomal protein L4P 2238  
34 2OTL 5 C 50S ribosomal protein L4P 2238  
35 3G71 4 C 50S ribosomal protein L4P 2238  
36 1FFK 5 C RIBOSOMAL PROTEIN L4 2238  
37 1VQ4 6 C 50S ribosomal protein L4E 2238  
38 1YJN 5 C 50S ribosomal protein L4E 2238  
39 3CMA 3 C 50S ribosomal protein L4P 2238  
40 3CCS 3 C 50S ribosomal protein L4P 2238  
41 3CCQ 3 C 50S ribosomal protein L4P 2238  
42 3I56 3 C 50S ribosomal protein L4P 2238  
43 3CCR 3 C 50S ribosomal protein L4P 2238  
44 2OTJ 5 C 50S ribosomal protein L4P 2238  
45 1KQS 7 C RIBOSOMAL PROTEIN L4 2238  
46 3OW2 5 C 50S ribosomal protein L4P 2238  
47 3CXC 6 C RIBOSOMAL PROTEIN L4 2238  
48 1QVG 6 C 50S ribosomal protein L4E 2238  
49 3CME 3 C 50S ribosomal protein L4P 2238  
50 2QEX 5 C 50S ribosomal protein L4P 2238  
51 1KC8 5 E RIBOSOMAL PROTEIN L4 2238  
52 1N8R 5 E 50S ribosomal protein L4E 2238  
53 1Q81 6 E 50S ribosomal protein L4E 2238  
54 1Q82 6 E 50S ribosomal protein L4E 2238  
55 1QVF 6 C 50S ribosomal protein L4E 2238  
56 1NJI 5 E 50S ribosomal protein L4E 2238  
57 1K73 5 E RIBOSOMAL PROTEIN L4 2238  
58 1K9M 5 E RIBOSOMAL PROTEIN L4 2238  
59 1KD1 5 E RIBOSOMAL PROTEIN L4 2238  
60 3I55 4 C 50S ribosomal protein L4P 2238  
61 1K8A 5 E RIBOSOMAL PROTEIN L4 2238  
62 1Q86 6 E 50S ribosomal protein L4E 2238  
63 1M1K 5 E RIBOSOMAL PROTEIN L4 2238  
64 3G4S 4 C 50S ribosomal protein L4P 2238  
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238  
66 2QA4 5 C 50S ribosomal protein L4P 2238  
67 1Q7Y 6 E 50S ribosomal protein L4E 2238  
68 4V4P 6 AF 50S ribosomal protein L4 300852  
69 4V4R 30 BF 50S ribosomal protein L4 274  
70 4V4S 30 BF 50S ribosomal protein L4 274  
71 4V4T 29 BF 50S ribosomal protein L4 274  
72 4V4N 46 AD 50S ribosomal protein L4P SEE REMARK 999 2190  
73 4V6U 53 BD 50S ribosomal protein L4P 186497  
74 4ADX 13 C RPL4 187420  
75 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562  
76 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 686
95% 36 68 489
90% 36 68 512
70% 36 68 562
50% 36 128 228
40% 36 128 257
30% 41 366 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50864
95% 1 1 35618
90% 1 1 34004
70% 36 68 555
50% 36 126 236
40% 36 126 264
30% 36 126 279
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 426
90% 36 74 452
70% 36 74 488
50% 36 74 557
40% 36 74 598
30% 40 358 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 423
90% 36 74 450
70% 36 74 485
50% 36 76 534
40% 36 76 576
30% 36 78 553
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 491
90% 36 68 515
70% 36 68 565
50% 36 70 613
40% 36 70 650
30% 36 70 646
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1777
95% 36 68 487
90% 36 68 510
70% 36 68 560
50% 36 68 644
40% 36 70 647
30% 36 71 628
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 492
90% 36 68 516
70% 36 68 566
50% 36 70 615
40% 36 70 652
30% 36 71 630
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 343
95% 36 68 485
90% 36 68 508
70% 36 68 558
50% 36 68 641
40% 36 68 674
30% 36 129 268
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 431
90% 36 74 457
70% 36 74 494
50% 36 76 538
40% 36 78 551
30% 40 310 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 429
90% 36 74 455
70% 36 74 492
50% 36 135 218
40% 36 135 242
30% 36 135 257
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 320
95% 34 70 467
90% 34 70 490
70% 34 70 539
50% 34 70 616
40% 34 70 653
30% 34 70 648
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 301
95% 36 74 432
90% 36 74 458
70% 36 74 495
50% 36 74 564
40% 36 74 603
30% 36 74 598
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 486
90% 36 68 509
70% 36 68 559
50% 36 68 642
40% 36 70 646
30% 36 71 627
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 494
90% 36 68 518
70% 36 68 568
50% 36 68 648
40% 36 68 678
30% 36 68 677
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53905
95% 3 5 11947
90% 3 5 11733
70% 3 5 11070
50% 3 5 9935
40% 3 5 9080
30% 3 5 7930
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59685
95% 1 1 41537
90% 1 1 39665
70% 3 21 2390
50% 7 30 1617
40% 7 84 400
30% 26 107 328
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 336
95% 36 68 496
90% 36 68 520
70% 36 68 570
50% 36 69 633
40% 36 69 669
30% 36 69 666
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60994
95% 36 68 497
90% 36 68 521
70% 36 68 571
50% 36 128 229
40% 36 128 258
30% 36 128 271
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 493
90% 36 68 517
70% 36 68 567
50% 36 68 647
40% 36 68 677
30% 36 127 275
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 484
90% 36 68 507
70% 36 68 557
50% 36 68 640
40% 36 127 261
30% 41 361 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1756
95% 36 68 481
90% 36 68 504
70% 36 68 554
50% 36 126 235
40% 36 128 255
30% 36 128 270
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44924
95% 36 74 416
90% 36 74 443
70% 36 74 481
50% 36 74 550
40% 36 132 248
30% 36 132 262
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8295
95% 36 74 420
90% 36 74 447
70% 36 74 484
50% 36 74 552
40% 36 76 572
30% 36 77 561
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 425
90% 36 74 451
70% 36 74 486
50% 36 74 555
40% 37 134 244
30% 37 134 259
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1788
95% 3 21 2334
90% 36 68 514
70% 36 68 564
50% 51 95 328
40% 58 105 302
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52908
95% 1 1 36757
90% 1 7 8478
70% 3 27 1758
50% 36 74 556
40% 36 79 538
30% 36 79 544
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 427
90% 36 74 453
70% 36 74 491
50% 36 74 560
40% 37 77 562
30% 37 78 556
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.