Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 714
95 % 36 68 509
90 % 36 68 538
70 % 36 68 588
50 % 36 137 223
40 % 36 137 250
30 % 42 407 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52834
95 % 1 1 36927
90 % 1 1 35202
70 % 36 68 580
50 % 36 132 237
40 % 36 132 263
30 % 36 132 278
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 301
95 % 36 74 443
90 % 36 74 466
70 % 36 74 509
50 % 36 74 589
40 % 36 74 633
30 % 41 396 45
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 299
95 % 36 74 440
90 % 36 74 464
70 % 36 74 506
50 % 36 76 564
40 % 36 76 608
30 % 36 78 581
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 346
95 % 36 68 511
90 % 36 68 541
70 % 36 68 591
50 % 36 70 648
40 % 36 70 688
30 % 36 70 690
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1848
95 % 36 68 507
90 % 36 68 536
70 % 36 68 586
50 % 36 68 684
40 % 36 70 685
30 % 36 71 671
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 347
95 % 36 68 512
90 % 36 68 542
70 % 36 68 592
50 % 36 70 649
40 % 36 70 690
30 % 36 71 674
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 356
95 % 36 68 505
90 % 36 68 534
70 % 36 68 584
50 % 36 68 681
40 % 36 68 714
30 % 36 136 267
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 448
90 % 36 74 471
70 % 36 74 517
50 % 36 76 568
40 % 36 78 583
30 % 41 342 53
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 304
95 % 36 74 446
90 % 36 74 469
70 % 36 74 514
50 % 36 141 219
40 % 36 141 248
30 % 36 141 260
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 331
95 % 34 70 487
90 % 34 70 514
70 % 34 70 563
50 % 34 70 651
40 % 34 70 691
30 % 34 70 691
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 449
90 % 36 74 472
70 % 36 74 518
50 % 36 74 596
40 % 36 74 640
30 % 36 74 635
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 344
95 % 36 68 506
90 % 36 68 535
70 % 36 68 585
50 % 36 68 682
40 % 36 70 684
30 % 36 71 670
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 349
95 % 36 68 514
90 % 36 68 544
70 % 36 68 594
50 % 36 68 688
40 % 36 68 718
30 % 36 68 719
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55929
95 % 3 5 12400
90 % 3 5 12166
70 % 3 5 11473
50 % 3 5 10284
40 % 3 5 9380
30 % 3 5 8184
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61819
95 % 1 1 42933
90 % 1 1 40943
70 % 3 21 2498
50 % 7 30 1686
40 % 7 90 384
30 % 26 113 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 516
90 % 36 68 546
70 % 36 68 596
50 % 36 69 670
40 % 36 69 705
30 % 36 69 706
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 36 68 517
90 % 36 68 547
70 % 36 68 597
50 % 36 134 230
40 % 36 134 258
30 % 36 134 274
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 348
95 % 36 68 513
90 % 36 68 543
70 % 36 68 593
50 % 36 68 687
40 % 36 68 717
30 % 36 132 281
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 343
95 % 36 68 504
90 % 36 68 533
70 % 36 68 583
50 % 36 68 680
40 % 36 136 253
30 % 42 402 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1825
95 % 36 68 501
90 % 36 68 530
70 % 36 68 579
50 % 36 132 236
40 % 36 134 256
30 % 36 134 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46681
95 % 36 74 432
90 % 36 74 457
70 % 36 74 502
50 % 36 74 580
40 % 36 141 244
30 % 36 141 257
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8647
95 % 36 74 436
90 % 36 74 461
70 % 36 74 505
50 % 36 74 583
40 % 36 76 605
30 % 36 77 592
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 300
95 % 36 74 442
90 % 36 74 465
70 % 36 74 507
50 % 36 74 587
40 % 37 141 247
30 % 37 141 259
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1861
95 % 3 21 2439
90 % 36 68 540
70 % 36 68 590
50 % 51 95 340
40 % 58 107 308
30 % 58 109 317
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54920
95 % 1 1 38086
90 % 1 7 8809
70 % 3 27 1833
50 % 36 74 588
40 % 36 79 570
30 % 36 79 573
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 302
95 % 36 74 444
90 % 36 74 467
70 % 36 74 512
50 % 36 74 592
40 % 37 77 595
30 % 37 78 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 5 C 50S ribosomal protein L4P 2238
2 1VQO 6 C 50S ribosomal protein L4E 2238
3 1VQ8 6 C 50S ribosomal protein L4E 2238
4 1S72 5 C 50S ribosomal protein L4E 2238
5 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
6 1YHQ 5 C 50S ribosomal protein L4E 2238
7 1VQP 6 C 50S ribosomal protein L4E 2238
8 1VQM 6 C 50S ribosomal protein L4E 2238
9 3CC2 3 C 50S ribosomal protein L4P 2238
10 1VQL 6 C 50S ribosomal protein L4E 2238
11 1VQK 6 C 50S ribosomal protein L4E 2238
12 1VQN 7 C 50S ribosomal protein L4E 2238
13 1YIJ 5 C 50S ribosomal protein L4E 2238
14 1YI2 5 C 50S ribosomal protein L4E 2238
15 1VQ9 6 C 50S ribosomal protein L4E 2238
16 1VQ7 6 C 50S ribosomal protein L4E 2238
17 3CCM 3 C 50S ribosomal protein L4P 2238
18 1VQ5 6 C 50S ribosomal protein L4E 2238
19 3CCJ 3 C 50S ribosomal protein L4P 2238
20 3CC7 3 C 50S ribosomal protein L4P 2238
21 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
22 3CCE 3 C 50S ribosomal protein L4P 2238
23 3G6E 4 C 50S ribosomal protein L4P 2238
24 3CPW 5 C 50S ribosomal protein L4P 2238
25 3CCU 3 C 50S ribosomal protein L4P 2238
26 1VQ6 7 C 50S ribosomal protein L4E 2238
27 1M90 6 E RIBOSOMAL PROTEIN L4 2238
28 3CCL 3 C 50S ribosomal protein L4P 2238
29 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
30 1YJ9 5 C 50S ribosomal protein L4E 2238
31 3CD6 3 C 50S ribosomal protein L4P 2238
32 3CCV 3 C 50S ribosomal protein L4P 2238
33 3CC4 3 C 50S ribosomal protein L4P 2238
34 2OTL 5 C 50S ribosomal protein L4P 2238
35 3G71 4 C 50S ribosomal protein L4P 2238
36 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
37 1VQ4 6 C 50S ribosomal protein L4E 2238
38 1YJN 5 C 50S ribosomal protein L4E 2238
39 3CMA 3 C 50S ribosomal protein L4P 2238
40 3CCS 3 C 50S ribosomal protein L4P 2238
41 3CCQ 3 C 50S ribosomal protein L4P 2238
42 3I56 3 C 50S ribosomal protein L4P 2238
43 3CCR 3 C 50S ribosomal protein L4P 2238
44 2OTJ 5 C 50S ribosomal protein L4P 2238
45 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
46 3OW2 5 C 50S ribosomal protein L4P 2238
47 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
48 1QVG 6 C 50S ribosomal protein L4E 2238
49 3CME 3 C 50S ribosomal protein L4P 2238
50 2QEX 5 C 50S ribosomal protein L4P 2238
51 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
52 1N8R 5 E 50S ribosomal protein L4E 2238
53 1Q81 6 E 50S ribosomal protein L4E 2238
54 1Q82 6 E 50S ribosomal protein L4E 2238
55 1QVF 6 C 50S ribosomal protein L4E 2238
56 1NJI 5 E 50S ribosomal protein L4E 2238
57 1K73 5 E RIBOSOMAL PROTEIN L4 2238
58 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
59 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
60 3I55 4 C 50S ribosomal protein L4P 2238
61 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
62 1Q86 6 E 50S ribosomal protein L4E 2238
63 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
64 3G4S 4 C 50S ribosomal protein L4P 2238
65 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
66 2QA4 5 C 50S ribosomal protein L4P 2238
67 1Q7Y 6 E 50S ribosomal protein L4E 2238
68 4V4P 6 AF 50S ribosomal protein L4 274
69 4V4R 30 BF 50S ribosomal protein L4 274
70 4V4S 30 BF 50S ribosomal protein L4 274
71 4V4T 29 BF 50S ribosomal protein L4 274
72 4V4N 46 AD 50S ribosomal protein L4P SEE REMARK 999 2190
73 4V6U 53 BD 50S ribosomal protein L4P 2261
74 4ADX 13 C RPL4 145262
75 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
76 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274