Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 617
95 % 35 68 759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 786
70 % 35 68 838
50 % 35 202 205
40 % 45 614 23
30 % 45 614 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48958
95 % 1 1 40556
90 % 1 1 38614
70 % 35 68 839
50 % 35 201 207
40 % 35 201 224
30 % 35 201 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 545
95 % 35 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 709
70 % 35 74 754
50 % 35 74 810
40 % 35 199 227
30 % 35 199 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 538
95 % 35 74 675 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 699
70 % 35 74 745
50 % 35 76 783
40 % 35 76 816
30 % 35 79 780
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 632
95 % 35 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 805
70 % 35 68 858
50 % 35 70 862
40 % 35 70 892
30 % 35 70 880
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2892
95 % 35 68 780 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 807
70 % 35 68 859
50 % 35 68 907
40 % 35 72 858
30 % 35 72 863
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 618
95 % 35 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 787
70 % 35 68 840
50 % 35 70 871
40 % 35 70 901
30 % 35 71 874
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 644
95 % 35 68 769 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 796
70 % 35 68 848
50 % 35 68 896
40 % 35 68 920
30 % 35 199 245
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 549
95 % 35 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 712
70 % 35 74 759
50 % 35 77 769
40 % 44 475 45
30 % 44 475 64
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 703
70 % 35 74 749
50 % 35 208 198
40 % 35 209 216
30 % 35 209 234
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 590
95 % 33 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 760
70 % 33 70 805
50 % 33 70 863
40 % 33 70 886
30 % 33 70 882
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 543
95 % 35 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 704
70 % 35 74 750
50 % 35 74 805
40 % 44 435 52
30 % 44 461 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 626
95 % 35 68 770 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 797
70 % 35 68 849
50 % 35 68 897
40 % 35 70 891
30 % 35 71 873
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 625
95 % 35 68 767 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 794
70 % 35 68 846
50 % 35 68 893
40 % 35 68 918
30 % 35 70 884
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59293
95 % 3 5 15414 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15087
70 % 3 5 14100
50 % 3 5 12471
40 % 3 5 11173
30 % 3 5 9507
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2795
95 % 3 21 3127 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3176
70 % 3 21 3124
50 % 7 30 2140
40 % 7 151 289
30 % 9 155 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 633
95 % 35 68 761 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 788
70 % 35 68 841
50 % 35 69 873
40 % 35 69 904
30 % 35 69 891
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59292
95 % 35 68 772 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 799
70 % 35 68 852
50 % 35 194 210
40 % 35 194 232
30 % 35 194 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 615
95 % 35 68 757 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 784
70 % 35 68 836
50 % 35 68 889
40 % 35 189 240
30 % 35 189 254
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 630
95 % 35 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 802
70 % 35 68 834
50 % 35 68 902
40 % 35 199 228
30 % 45 603 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2251
95 % 35 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 803
70 % 35 68 856
50 % 35 192 213
40 % 35 192 234
30 % 35 192 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61659
95 % 35 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 708
70 % 35 74 753
50 % 35 74 809
40 % 35 207 217
30 % 35 207 235
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 880
95 % 35 74 674 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 698
70 % 35 74 744
50 % 35 74 800
40 % 35 76 815
30 % 36 78 793
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 544
95 % 35 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 707
70 % 35 74 752
50 % 35 74 808
40 % 36 201 223
30 % 36 201 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2812
95 % 3 21 3142 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 783
70 % 35 68 835
50 % 51 107 400
40 % 58 130 314
30 % 72 276 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61656
95 % 1 1 50243
90 % 1 7 11399
70 % 3 27 2445
50 % 35 74 803
40 % 35 79 774
30 % 35 79 786
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 695
70 % 35 74 740
50 % 35 74 802
40 % 36 78 797
30 % 36 78 795

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VQO 6 C 50S ribosomal protein L4E 2238
2 1VQ8 6 C 50S ribosomal protein L4E 2238
3 1S72 5 C 50S ribosomal protein L4E 2238
4 1JJ2 5 C RIBOSOMAL PROTEIN L4 2238
5 1YHQ 5 C 50S ribosomal protein L4E 2238
6 1VQP 6 C 50S ribosomal protein L4E 2238
7 1VQM 6 C 50S ribosomal protein L4E 2238
8 1VQL 6 C 50S ribosomal protein L4E 2238
9 1VQK 6 C 50S ribosomal protein L4E 2238
10 1VQN 7 C 50S ribosomal protein L4E 2238
11 1YIJ 5 C 50S ribosomal protein L4E 2238
12 1YI2 5 C 50S ribosomal protein L4E 2238
13 1VQ9 6 C 50S ribosomal protein L4E 2238
14 1VQ7 6 C 50S ribosomal protein L4E 2238
15 1VQ5 6 C 50S ribosomal protein L4E 2238
16 1YIT 9 C 50S RIBOSOMAL PROTEIN L4E 2238
17 1VQ6 7 C 50S ribosomal protein L4E 2238
18 1M90 6 E RIBOSOMAL PROTEIN L4 2238
19 1YJW 9 C 50S RIBOSOMAL PROTEIN L4E 2238
20 1YJ9 5 C 50S ribosomal protein L4E 2238
21 2OTL 5 C 50S ribosomal protein L4P 2238
22 1FFK 5 C RIBOSOMAL PROTEIN L4 2238
23 1VQ4 6 C 50S ribosomal protein L4E 2238
24 1YJN 5 C 50S ribosomal protein L4E 2238
25 2OTJ 5 C 50S ribosomal protein L4P 2238
26 1KQS 7 C RIBOSOMAL PROTEIN L4 2238
27 3OW2 5 C 50S ribosomal protein L4P 2238
28 3CXC 6 C RIBOSOMAL PROTEIN L4 2238
29 1QVG 6 C 50S ribosomal protein L4E 2238
30 2QEX 5 C 50S ribosomal protein L4P 2238
31 1KC8 5 E RIBOSOMAL PROTEIN L4 2238
32 1N8R 5 E 50S ribosomal protein L4E 2238
33 1Q81 6 E 50S ribosomal protein L4E 2238
34 1Q82 6 E 50S ribosomal protein L4E 2238
35 1QVF 6 C 50S ribosomal protein L4E 2238
36 1NJI 5 E 50S ribosomal protein L4E 2238
37 1K73 5 E RIBOSOMAL PROTEIN L4 2238
38 1K9M 5 E RIBOSOMAL PROTEIN L4 2238
39 1KD1 5 E RIBOSOMAL PROTEIN L4 2238
40 1K8A 5 E RIBOSOMAL PROTEIN L4 2238
41 1Q86 6 E 50S ribosomal protein L4E 2238
42 1M1K 5 E RIBOSOMAL PROTEIN L4 2238
43 1W2B 8 C 50S RIBOSOMAL PROTEIN L4P 2238
44 2QA4 5 C 50S ribosomal protein L4P 2238
45 1Q7Y 6 E 50S ribosomal protein L4E 2238
46 4V4P 6 AF 50S ribosomal protein L4 274
47 4V4R 30 BF 50S ribosomal protein L4 274
48 4V4S 30 BF 50S ribosomal protein L4 274
49 4V4T 29 BF 50S ribosomal protein L4 274
50 1ML5 30 f 50S RIBOSOMAL PROTEIN L4 562
51 4V42 30 BF 50S RIBOSOMAL PROTEIN L4 274