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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 318 Members. Sequence cutoff: 40% Cluster size: 109 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 4 B 50S ribosomal protein L3P 272569  
2 1VQO 5 B 50S ribosomal protein L3P 2238  
3 1VQ8 5 B 50S ribosomal protein L3P 2238  
4 1S72 4 B 50S ribosomal protein L3P 2238  
5 1JJ2 4 B RIBOSOMAL PROTEIN L3 2238  
6 1YHQ 4 B 50S ribosomal protein L3P 2238  
7 1VQP 5 B 50S ribosomal protein L3P 2238  
8 1VQM 5 B 50S ribosomal protein L3P 2238  
9 3CC2 2 B 50S ribosomal protein L3P 2238  
10 1VQL 5 B 50S ribosomal protein L3P 2238  
11 1VQK 5 B 50S ribosomal protein L3P 2238  
12 1VQN 6 B 50S ribosomal protein L3P 2238  
13 1YIJ 4 B 50S ribosomal protein L3P 2238  
14 1YI2 4 B 50S ribosomal protein L3P 2238  
15 1VQ9 5 B 50S ribosomal protein L3P 2238  
16 1VQ7 5 B 50S ribosomal protein L3P 2238  
17 3CCM 2 B 50S ribosomal protein L3P 2238  
18 1VQ5 5 B 50S ribosomal protein L3P 2238  
19 3CCJ 2 B 50S ribosomal protein L3P 2238  
20 3CC7 2 B 50S ribosomal protein L3P 2238  
21 1YIT 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
22 3CCE 2 B 50S ribosomal protein L3P 2238  
23 3G6E 3 B 50S ribosomal protein L3P 2238  
24 3CPW 4 B 50S ribosomal protein L3P 2238  
25 3CCU 2 B 50S ribosomal protein L3P 2238  
26 1VQ6 6 B 50S ribosomal protein L3P 2238  
27 1M90 5 D RIBOSOMAL PROTEIN L3 2238  
28 3CCL 2 B 50S ribosomal protein L3P 2238  
29 1YJW 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
30 1YJ9 4 B 50S ribosomal protein L3P 2238  
31 3CD6 2 B 50S ribosomal protein L3P 2238  
32 3CCV 2 B 50S ribosomal protein L3P 2238  
33 3CC4 2 B 50S ribosomal protein L3P 2238  
34 2OTL 4 B 50S ribosomal protein L3P 2238  
35 3G71 3 B 50S ribosomal protein L3P 2238  
36 1FFK 4 B RIBOSOMAL PROTEIN L3 2238  
37 1VQ4 5 B 50S ribosomal protein L3P 2238  
38 1YJN 4 B 50S ribosomal protein L3P 2238  
39 3CMA 2 B 50S ribosomal protein L3P 2238  
40 3CCS 2 B 50S ribosomal protein L3P 2238  
41 3CCQ 2 B 50S ribosomal protein L3P 2238  
42 3I56 2 B 50S ribosomal protein L3P 2238  
43 3CCR 2 B 50S ribosomal protein L3P 2238  
44 2OTJ 4 B 50S ribosomal protein L3P 2238  
45 3U5E 2 B 60S ribosomal protein L3 559292  
46 3U5I 2 B 60S ribosomal protein L3 559292  
47 1KQS 6 B RIBOSOMAL PROTEIN L3 2238  
48 3OW2 4 B 50S ribosomal protein L3P 2238  
49 3CXC 5 B RIBOSOMAL PROTEIN L3 2238  
50 1QVG 5 B 50S ribosomal protein L3P 2238  
51 3CME 2 B 50S ribosomal protein L3P 2238  
52 2QEX 4 B 50S ribosomal protein L3P 2238  
53 1KC8 4 D RIBOSOMAL PROTEIN L3 2238  
54 1N8R 4 D 50S ribosomal protein L3P 2238  
55 1Q81 5 D 50S ribosomal protein L3P 2238  
56 1Q82 5 D 50S ribosomal protein L3P 2238  
57 1QVF 5 B 50S ribosomal protein L3P 2238  
58 1NJI 4 D 50S ribosomal protein L3P 2238  
59 1K73 4 D RIBOSOMAL PROTEIN L3 2238  
60 1K9M 4 D RIBOSOMAL PROTEIN L3 2238  
61 1KD1 4 D RIBOSOMAL PROTEIN L3 2238  
62 3I55 3 B 50S ribosomal protein L3P 2238  
63 1K8A 4 D RIBOSOMAL PROTEIN L3 2238  
64 1Q86 5 D 50S ribosomal protein L3P 2238  
65 1M1K 4 D RIBOSOMAL PROTEIN L3 2238  
66 3G4S 3 B 50S ribosomal protein L3P 2238  
67 1W2B 7 B 50S RIBOSOMAL PROTEIN L3P 2238  
68 2QA4 4 B 50S ribosomal protein L3P 2238  
69 1Q7Y 5 D 50S ribosomal protein L3P 2238  
70 4A17 4 B RIBOSOMAL PROTEIN L3 5911  
71 4A1A 4 B RIBOSOMAL PROTEIN L3 5911  
72 4A1C 4 B RIBOSOMAL PROTEIN L3 5911  
73 4A1E 4 B RIBOSOMAL PROTEIN L3 5911  
74 3O58 6 C 60S ribosomal protein L3 4932  
75 3O5H 6 C 60S ribosomal protein L3 4932  
76 1YL3 5 E 50S ribosomal protein L3 300852  
77 2B66 4 E 50S ribosomal protein L3 274  
78 2B9N 4 E 50S ribosomal protein L3 274  
79 2B9P 4 E 50S ribosomal protein L3 274  
80 4W20 2 B Ribosomal protein uL3 9823  
81 4W22 2 B Ribosomal protein uL3 9823  
82 4W25 2 B Ribosomal protein uL3 9823  
83 4W27 2 B Ribosomal protein uL3 9823  
84 4UPX 2 B 60S RIBOSOMAL PROTEIN L3 9986  
85 4UQ1 2 B 60S RIBOSOMAL PROTEIN L3 9986  
86 1VX7 2 E 60S ribosomal protein uL3 36329  
87 1VXV 3 C 60S ribosomal protein L3 4932  
88 1VXY 3 C 60S ribosomal protein L3 4932  
89 1VW8 3 C 60S ribosomal protein L3 580240  
90 1VWU 3 C 60S ribosomal protein L3 580240  
91 4CXD 2 B 60S RIBOSOMAL PROTEIN L3 9986  
92 4CUW 2 B UL3 RIBOSOMAL PROTEIN UL3 28985  
93 3J65 3 C 60S ribosomal protein L3 4932  
94 3J61 35 B 60S ribosomal protein L3 4565  
95 4BYN 2 B 60S RIBOSOMAL PROTEIN L3 4932  
96 4BYU 2 B 60S RIBOSOMAL PROTEIN L3 4932  
97 3J44 8 C 50S ribosomal protein L3P SEE REMARK 999 2190  
98 3J39 26 B 60S ribosomal protein L3 7227  
99 3J3B 26 B 60S ribosomal protein L3 9606  
100 3ZF7 24 f RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE 185431  
101 3J21 3 C 50S ribosomal protein L3P 186497  
102 4B6A 2 B 60S RIBOSOMAL PROTEIN L3 559292  
103 4ADX 12 B RPL3 187420  
104 3IZS 3 C 60S ribosomal protein rpL3 (L3p) 4932  
105 3JYW 8 C 60S ribosomal protein L3 5541  
106 2ZKR 30 b 60S Ribosomal protein L3 9615  
107 1S1I 5 C 60S ribosomal protein L3 4932  
108 1ML5 29 e 50S RIBOSOMAL PROTEIN L3 562  
109 1GIY 5 E 50S RIBOSOMAL PROTEIN L3 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 547
95% 36 68 449
90% 36 68 471
70% 36 68 502
50% 36 105 320
40% 36 105 344
30% 37 402 56
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46577
95% 1 1 32715
90% 1 1 31302
70% 36 68 495
50% 36 103 330
40% 36 103 353
30% 36 103 364
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 276
95% 36 74 395
90% 36 74 419
70% 36 74 444
50% 36 74 493
40% 36 74 523
30% 36 394 62
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 274
95% 36 74 393
90% 36 74 417
70% 36 74 442
50% 36 76 476
40% 36 76 504
30% 36 78 499
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 312
95% 36 68 451
90% 36 68 474
70% 36 68 505
50% 36 70 531
40% 36 70 557
30% 36 70 562
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1531
95% 36 68 447
90% 36 68 469
70% 36 68 500
50% 36 68 556
40% 36 70 556
30% 36 71 547
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 453
90% 36 68 476
70% 36 68 507
50% 36 70 533
40% 36 70 560
30% 36 71 549
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 326
95% 36 68 445
90% 36 68 467
70% 36 68 498
50% 36 68 553
40% 36 68 584
30% 36 106 349
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 422
70% 36 74 447
50% 36 76 477
40% 36 78 486
30% 36 369 73
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 421
70% 36 74 446
50% 36 112 286
40% 36 112 310
30% 36 112 327
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 302
95% 34 70 429
90% 34 70 449
70% 34 70 478
50% 34 70 534
40% 34 70 561
30% 34 70 563
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 399
90% 36 74 423
70% 36 74 448
50% 36 74 495
40% 36 74 525
30% 36 74 527
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 310
95% 36 68 446
90% 36 68 468
70% 36 68 499
50% 36 68 554
40% 36 70 555
30% 36 71 546
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 455
90% 36 68 478
70% 36 68 509
50% 36 68 560
40% 36 68 589
30% 36 68 585
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49468
95% 3 5 10959
90% 3 5 10788
70% 3 5 10213
50% 3 5 9173
40% 3 5 8374
30% 3 5 7360
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54982
95% 1 1 38385
90% 1 1 36737
70% 3 21 2125
50% 7 30 1448
40% 7 58 696
30% 26 81 477
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 457
90% 36 68 480
70% 36 68 511
50% 36 69 546
40% 36 69 576
30% 36 69 576
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56239
95% 36 68 458
90% 36 68 481
70% 36 68 512
50% 36 105 323
40% 36 105 346
30% 36 105 357
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 454
90% 36 68 477
70% 36 68 508
50% 36 68 559
40% 36 68 588
30% 36 104 361
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 309
95% 36 68 444
90% 36 68 466
70% 36 68 497
50% 36 68 552
40% 36 104 349
30% 37 397 61
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1516
95% 35 67 462
90% 35 67 485
70% 35 67 518
50% 35 102 332
40% 35 104 347
30% 35 104 358
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41062
95% 36 74 388
90% 36 74 413
70% 36 74 439
50% 36 74 488
40% 36 109 318
30% 36 109 332
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7493
95% 36 74 391
90% 36 74 415
70% 36 74 441
50% 36 74 490
40% 36 76 503
30% 36 77 505
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 275
95% 36 74 394
90% 36 74 418
70% 36 74 443
50% 36 74 491
40% 36 109 321
30% 36 109 335
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1542
95% 3 21 2053
90% 36 68 473
70% 36 68 504
50% 51 97 279
40% 57 106 271
30% 57 108 290
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48514
95% 1 1 33800
90% 1 7 7789
70% 3 27 1544
50% 36 74 492
40% 36 78 483
30% 36 78 501
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 396
90% 36 74 420
70% 36 74 445
50% 36 74 494
40% 37 77 495
30% 37 78 502
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.