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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 252 Members. Sequence cutoff: 40% Cluster size: 125 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 4 B 50S ribosomal protein L3P 272569  
2 1VQO 5 B 50S ribosomal protein L3P 2238  
3 1VQ8 5 B 50S ribosomal protein L3P 2238  
4 1S72 4 B 50S ribosomal protein L3P 2238  
5 1JJ2 4 B RIBOSOMAL PROTEIN L3 2238  
6 1YHQ 4 B 50S ribosomal protein L3P 2238  
7 1VQP 5 B 50S ribosomal protein L3P 2238  
8 1VQM 5 B 50S ribosomal protein L3P 2238  
9 3CC2 2 B 50S ribosomal protein L3P 2238  
10 1VQL 5 B 50S ribosomal protein L3P 2238  
11 1VQK 5 B 50S ribosomal protein L3P 2238  
12 1VQN 6 B 50S ribosomal protein L3P 2238  
13 1YIJ 4 B 50S ribosomal protein L3P 2238  
14 1YI2 4 B 50S ribosomal protein L3P 2238  
15 1VQ9 5 B 50S ribosomal protein L3P 2238  
16 1VQ7 5 B 50S ribosomal protein L3P 2238  
17 3CCM 2 B 50S ribosomal protein L3P 272569  
18 1VQ5 5 B 50S ribosomal protein L3P 2238  
19 3CCJ 2 B 50S ribosomal protein L3P 272569  
20 3CC7 2 B 50S ribosomal protein L3P 2238  
21 1YIT 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
22 3CCE 2 B 50S ribosomal protein L3P 272569  
23 3G6E 3 B 50S ribosomal protein L3P 2238  
24 3CPW 4 B 50S ribosomal protein L3P 2238  
25 3CCU 2 B 50S ribosomal protein L3P 272569  
26 1VQ6 6 B 50S ribosomal protein L3P 2238  
27 1M90 5 D RIBOSOMAL PROTEIN L3 2238  
28 3CCL 2 B 50S ribosomal protein L3P 272569  
29 1YJW 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
30 1YJ9 4 B 50S ribosomal protein L3P 2238  
31 3CD6 2 B 50S ribosomal protein L3P 272569  
32 3CCV 2 B 50S ribosomal protein L3P 272569  
33 3CC4 2 B 50S ribosomal protein L3P 272569  
34 2OTL 4 B 50S ribosomal protein L3P 2238  
35 3G71 3 B 50S ribosomal protein L3P 2238  
36 1FFK 4 B RIBOSOMAL PROTEIN L3 2238  
37 1VQ4 5 B 50S ribosomal protein L3P 2238  
38 1YJN 4 B 50S ribosomal protein L3P 2238  
39 3CMA 2 B 50S ribosomal protein L3P 2238  
40 3CCS 2 B 50S ribosomal protein L3P 272569  
41 3CCQ 2 B 50S ribosomal protein L3P 272569  
42 3I56 2 B 50S ribosomal protein L3P 2238  
43 3CCR 2 B 50S ribosomal protein L3P 272569  
44 2OTJ 4 B 50S ribosomal protein L3P 2238  
45 4V88 40 BB, DB 60S ribosomal protein L3 559292  
46 1KQS 6 B RIBOSOMAL PROTEIN L3 2238  
47 3OW2 4 B 50S ribosomal protein L3P 2238  
48 4U4R 40 L3, l3 60S ribosomal protein L3 559292  
49 3CXC 5 B RIBOSOMAL PROTEIN L3 2238  
50 1QVG 5 B 50S ribosomal protein L3P 2238  
51 3CME 2 B 50S ribosomal protein L3P 2238  
52 2QEX 4 B 50S ribosomal protein L3P 2238  
53 4U3U 40 L3, l3 60S ribosomal protein L3 559292  
54 1KC8 4 D RIBOSOMAL PROTEIN L3 2238  
55 4U3M 40 L3, l3 60S ribosomal protein L3 559292  
56 1N8R 4 D 50S ribosomal protein L3P 2238  
57 4U3N 40 L3, l3 60S ribosomal protein L3 559292  
58 1Q81 5 D 50S ribosomal protein L3P 2238  
59 1Q82 5 D 50S ribosomal protein L3P 2238  
60 1QVF 5 B 50S ribosomal protein L3P 2238  
61 4U52 40 L3, l3 60S ribosomal protein L3 559292  
62 4U4Q 40 L3, l3 60S ribosomal protein L3 559292  
63 1NJI 4 D 50S ribosomal protein L3P 2238  
64 4U6F 40 L3, l3 60S ribosomal protein L3 559292  
65 4U4U 40 L3, l3 60S ribosomal protein L3 559292  
66 1K73 4 D RIBOSOMAL PROTEIN L3 2238  
67 4U4Z 40 L3, l3 60S ribosomal protein L3 559292  
68 4U4Y 40 L3, l3 60S ribosomal protein L3 559292  
69 4U4N 40 L3, l3 60S ribosomal protein L3 559292  
70 4U55 40 L3, l3 60S ribosomal protein L3 559292  
71 1K9M 4 D RIBOSOMAL PROTEIN L3 2238  
72 1KD1 4 D RIBOSOMAL PROTEIN L3 2238  
73 3I55 3 B 50S ribosomal protein L3P 2238  
74 4U51 40 L3, l3 60S ribosomal protein L3 559292  
75 1K8A 4 D RIBOSOMAL PROTEIN L3 2238  
76 4U53 40 L3, l3 60S ribosomal protein L3 559292  
77 1Q86 5 D 50S ribosomal protein L3P 2238  
78 4U50 40 L3, l3 60S ribosomal protein L3 559292  
79 1M1K 4 D RIBOSOMAL PROTEIN L3 2238  
80 3G4S 3 B 50S ribosomal protein L3P 2238  
81 1W2B 7 B 50S RIBOSOMAL PROTEIN L3P 2238  
82 4U56 40 L3, l3 60S ribosomal protein L3 559292  
83 2QA4 4 B 50S ribosomal protein L3P 2238  
84 1Q7Y 5 D 50S ribosomal protein L3P 2238  
85 4U4O 40 L3, l3 60S ribosomal protein L3 559292  
86 4V8P 23 BB, CB, EB, GB RIBOSOMAL PROTEIN L3 5911  
87 4V7R 34 BC, DC 60S ribosomal protein L3 4932  
88 4V4P 5 AE 50S ribosomal protein L3 300852  
89 4V4R 29 BE 50S ribosomal protein L3 274  
90 4V4S 29 BE 50S ribosomal protein L3 274  
91 4V4T 28 BE 50S ribosomal protein L3 274  
92 3J92 2 B uL3 9986  
93 4D67 2 B 60S RIBOSOMAL PROTEIN L3 9986  
94 4D5Y 2 B 60S RIBOSOMAL PROTEIN UL3 9986  
95 4V3P 80 LC Ribosomal protein L3 4565  
96 3J7O 5 B Ribosomal protein uL3 9823  
97 3J7P 5 B Ribosomal protein uL3 9823  
98 3J7Q 5 B Ribosomal protein uL3 9823  
99 3J7R 5 B Ribosomal protein uL3 9823  
100 4UJC 8 BB 60S RIBOSOMAL PROTEIN L3 9986  
101 4UJD 5 AB 60S RIBOSOMAL PROTEIN L3 9986  
102 3J79 5 E 60S ribosomal protein uL3 36329  
103 3J77 3 L3 60S ribosomal protein L3 4932  
104 3J78 3 L3 60S ribosomal protein L3 4932  
105 3J6X 6 L3 60S ribosomal protein L3 580240  
106 3J6Y 6 L3 60S ribosomal protein L3 580240  
107 4UJE 39 CB 60S RIBOSOMAL PROTEIN L3 9986  
108 4V91 5 B UL3 RIBOSOMAL PROTEIN UL3 28985  
109 4V7F 6 C 60S ribosomal protein L3 4932  
110 4V7E 71 CB 60S ribosomal protein L3 4565  
111 4V8Y 36 BB 60S RIBOSOMAL PROTEIN L3 4932  
112 4V8Z 36 BB 60S RIBOSOMAL PROTEIN L3 4932  
113 4V4N 45 AC 50S ribosomal protein L3P SEE REMARK 999 2190  
114 4V6W 63 CB 60S ribosomal protein L3 7227  
115 4V6X 63 CB 60S ribosomal protein L3 9606  
116 4V8M 65 Bf RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE 185431  
117 4V6U 33 BC 50S ribosomal protein L3P 186497  
118 4V8T 2 B 60S RIBOSOMAL PROTEIN L3 559292  
119 4ADX 12 B RPL3 187420  
120 4V6I 32 BC 60S ribosomal protein rpL3 (L3p) 4932  
121 4V7H 27 BC 60S ribosomal protein L3 5541  
122 4V5Z 54 Bb 60S Ribosomal protein L3 9615  
123 4V4B 22 BC 60S ribosomal protein L3 4932  
124 1ML5 29 e 50S RIBOSOMAL PROTEIN L3 562  
125 4V42 29 BE 50S RIBOSOMAL PROTEIN L3 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 663
95% 36 68 473
90% 36 68 495
70% 36 68 535
50% 36 121 239
40% 36 121 265
30% 41 335 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49337
95% 1 1 34599
90% 1 1 33069
70% 36 68 527
50% 36 119 243
40% 36 119 271
30% 36 119 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 440
70% 36 74 469
50% 36 74 515
40% 36 74 557
30% 40 327 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 438
70% 36 74 467
50% 36 76 494
40% 36 76 533
30% 36 78 518
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 70 573
40% 36 70 607
30% 36 70 608
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1711
95% 36 68 471
90% 36 68 493
70% 36 68 533
50% 36 68 607
40% 36 70 605
30% 36 71 588
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 477
90% 36 68 500
70% 36 68 540
50% 36 70 577
40% 36 70 612
30% 36 71 591
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 604
40% 36 68 639
30% 36 122 278
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 443
70% 36 74 473
50% 36 76 495
40% 36 78 515
30% 40 286 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 442
70% 36 74 472
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 453
90% 34 70 474
70% 34 70 510
50% 34 70 578
40% 34 70 613
30% 34 70 611
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 444
70% 36 74 474
50% 36 74 520
40% 36 74 560
30% 36 74 555
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 605
40% 36 70 604
30% 36 71 587
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 611
40% 36 68 644
30% 36 68 638
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52323
95% 3 5 11533
90% 3 5 11347
70% 3 5 10735
50% 3 5 9643
40% 3 5 8804
30% 3 5 7701
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58016
95% 1 1 40444
90% 1 1 38653
70% 3 21 2307
50% 7 30 1571
40% 7 77 413
30% 26 100 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 69 595
40% 36 69 629
30% 36 69 626
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59310
95% 36 68 482
90% 36 68 505
70% 36 68 545
50% 36 121 240
40% 36 121 266
30% 36 121 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 610
40% 36 68 643
30% 36 120 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 468
90% 36 68 490
70% 36 68 530
50% 36 68 603
40% 36 120 268
30% 41 330 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1694
95% 36 68 465
90% 36 68 488
70% 36 68 526
50% 36 119 242
40% 36 121 264
30% 36 121 280
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43535
95% 36 74 407
90% 36 74 432
70% 36 74 463
50% 36 74 509
40% 36 125 252
30% 36 125 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7985
95% 36 74 411
90% 36 74 436
70% 36 74 466
50% 36 74 511
40% 36 76 531
30% 36 77 525
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 439
70% 36 74 468
50% 36 74 513
40% 36 126 251
30% 36 126 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 3 21 2256
90% 36 68 497
70% 36 68 537
50% 51 95 309
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51339
95% 1 1 35718
90% 1 7 8203
70% 3 27 1696
50% 36 74 514
40% 36 79 503
30% 36 79 511
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 441
70% 36 74 470
50% 36 74 519
40% 37 77 524
30% 37 78 520
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.