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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 250 Members. Sequence cutoff: 40% Cluster size: 143 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 4 B 50S ribosomal protein L3P 272569  
2 1VQO 5 B 50S ribosomal protein L3P 2238  
3 1VQ8 5 B 50S ribosomal protein L3P 2238  
4 1S72 4 B 50S ribosomal protein L3P 2238  
5 1JJ2 4 B RIBOSOMAL PROTEIN L3 2238  
6 1YHQ 4 B 50S ribosomal protein L3P 2238  
7 1VQP 5 B 50S ribosomal protein L3P 2238  
8 1VQM 5 B 50S ribosomal protein L3P 2238  
9 3CC2 2 B 50S ribosomal protein L3P 2238  
10 1VQL 5 B 50S ribosomal protein L3P 2238  
11 1VQK 5 B 50S ribosomal protein L3P 2238  
12 1VQN 6 B 50S ribosomal protein L3P 2238  
13 1YIJ 4 B 50S ribosomal protein L3P 2238  
14 1YI2 4 B 50S ribosomal protein L3P 2238  
15 1VQ9 5 B 50S ribosomal protein L3P 2238  
16 1VQ7 5 B 50S ribosomal protein L3P 2238  
17 3CCM 2 B 50S ribosomal protein L3P 2238  
18 1VQ5 5 B 50S ribosomal protein L3P 2238  
19 3CCJ 2 B 50S ribosomal protein L3P 2238  
20 3CC7 2 B 50S ribosomal protein L3P 2238  
21 1YIT 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
22 3CCE 2 B 50S ribosomal protein L3P 2238  
23 3G6E 3 B 50S ribosomal protein L3P 2238  
24 3CPW 4 B 50S ribosomal protein L3P 2238  
25 3CCU 2 B 50S ribosomal protein L3P 2238  
26 1VQ6 6 B 50S ribosomal protein L3P 2238  
27 1M90 5 D RIBOSOMAL PROTEIN L3 2238  
28 3CCL 2 B 50S ribosomal protein L3P 2238  
29 1YJW 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
30 1YJ9 4 B 50S ribosomal protein L3P 2238  
31 3CD6 2 B 50S ribosomal protein L3P 2238  
32 3CCV 2 B 50S ribosomal protein L3P 2238  
33 3CC4 2 B 50S ribosomal protein L3P 2238  
34 2OTL 4 B 50S ribosomal protein L3P 2238  
35 3G71 3 B 50S ribosomal protein L3P 2238  
36 1FFK 4 B RIBOSOMAL PROTEIN L3 2238  
37 1VQ4 5 B 50S ribosomal protein L3P 2238  
38 1YJN 4 B 50S ribosomal protein L3P 2238  
39 3CMA 2 B 50S ribosomal protein L3P 2238  
40 3CCS 2 B 50S ribosomal protein L3P 2238  
41 3CCQ 2 B 50S ribosomal protein L3P 2238  
42 3I56 2 B 50S ribosomal protein L3P 2238  
43 3CCR 2 B 50S ribosomal protein L3P 2238  
44 2OTJ 4 B 50S ribosomal protein L3P 2238  
45 3U5E 2 B 60S ribosomal protein L3 559292  
46 3U5I 2 B 60S ribosomal protein L3 559292  
47 1KQS 6 B RIBOSOMAL PROTEIN L3 2238  
48 3OW2 4 B 50S ribosomal protein L3P 2238  
49 4UJQ 5 E 60S RIBOSOMAL PROTEIN L3 559292  
50 4UJS 13 M 60S RIBOSOMAL PROTEIN L3 559292  
51 3CXC 5 B RIBOSOMAL PROTEIN L3 2238  
52 1QVG 5 B 50S ribosomal protein L3P 2238  
53 3CME 2 B 50S ribosomal protein L3P 2238  
54 2QEX 4 B 50S ribosomal protein L3P 2238  
55 4UKA 5 E 60S RIBOSOMAL PROTEIN L3 559292  
56 4UKC 13 M 60S RIBOSOMAL PROTEIN L3 559292  
57 1KC8 4 D RIBOSOMAL PROTEIN L3 2238  
58 4UK0 5 E 60S RIBOSOMAL PROTEIN L3 559292  
59 4UK2 13 M 60S RIBOSOMAL PROTEIN L3 559292  
60 1N8R 4 D 50S ribosomal protein L3P 2238  
61 4UK5 5 E 60S RIBOSOMAL PROTEIN L3 559292  
62 4UK7 13 M 60S RIBOSOMAL PROTEIN L3 559292  
63 1Q81 5 D 50S ribosomal protein L3P 2238  
64 1Q82 5 D 50S ribosomal protein L3P 2238  
65 1QVF 5 B 50S ribosomal protein L3P 2238  
66 4ULA 5 E 60S RIBOSOMAL PROTEIN L3 559292  
67 4ULC 13 M 60S RIBOSOMAL PROTEIN L3 559292  
68 4UL5 5 E 60S RIBOSOMAL PROTEIN L3 559292  
69 4UL7 13 M 60S RIBOSOMAL PROTEIN L3 559292  
70 1NJI 4 D 50S ribosomal protein L3P 2238  
71 4UJV 5 E 60S RIBOSOMAL PROTEIN L3 559292  
72 4UJX 13 M 60S RIBOSOMAL PROTEIN L3 559292  
73 4UJL 5 E 60S RIBOSOMAL PROTEIN L3 559292  
74 4UJN 13 M 60S RIBOSOMAL PROTEIN L3 559292  
75 1K73 4 D RIBOSOMAL PROTEIN L3 2238  
76 4ULK 5 E 60S RIBOSOMAL PROTEIN L3 559292  
77 4ULN 13 M 60S RIBOSOMAL PROTEIN L3 559292  
78 4ULF 5 E 60S RIBOSOMAL PROTEIN L3 559292  
79 4ULH 13 M 60S RIBOSOMAL PROTEIN L3 559292  
80 4UKV 5 E 60S RIBOSOMAL PROTEIN L3 559292  
81 4UKX 13 M 60S RIBOSOMAL PROTEIN L3 559292  
82 4UKL 5 E 60S RIBOSOMAL PROTEIN L3 559292  
83 4UKN 13 M 60S RIBOSOMAL PROTEIN L3 559292  
84 1K9M 4 D RIBOSOMAL PROTEIN L3 2238  
85 1KD1 4 D RIBOSOMAL PROTEIN L3 2238  
86 3I55 3 B 50S ribosomal protein L3P 2238  
87 4UJG 5 E 60S RIBOSOMAL PROTEIN L3 559292  
88 4UJI 13 M 60S RIBOSOMAL PROTEIN L3 559292  
89 1K8A 4 D RIBOSOMAL PROTEIN L3 2238  
90 4UKQ 5 E 60S RIBOSOMAL PROTEIN L3 559292  
91 4UKS 13 M 60S RIBOSOMAL PROTEIN L3 559292  
92 4ULQ 5 E 60S RIBOSOMAL PROTEIN L3 559292  
93 4ULS 13 M 60S RIBOSOMAL PROTEIN L3 559292  
94 1Q86 5 D 50S ribosomal protein L3P 2238  
95 1M1K 4 D RIBOSOMAL PROTEIN L3 2238  
96 3G4S 3 B 50S ribosomal protein L3P 2238  
97 1W2B 7 B 50S RIBOSOMAL PROTEIN L3P 2238  
98 4UKG 5 E 60S RIBOSOMAL PROTEIN L3 559292  
99 4UKI 13 M 60S RIBOSOMAL PROTEIN L3 559292  
100 2QA4 4 B 50S ribosomal protein L3P 2238  
101 1Q7Y 5 D 50S ribosomal protein L3P 2238  
102 4UL0 5 E 60S RIBOSOMAL PROTEIN L3 559292  
103 4UL2 13 M 60S RIBOSOMAL PROTEIN L3 559292  
104 4A17 4 B RIBOSOMAL PROTEIN L3 5911  
105 4A1A 4 B RIBOSOMAL PROTEIN L3 5911  
106 4A1C 4 B RIBOSOMAL PROTEIN L3 5911  
107 4A1E 4 B RIBOSOMAL PROTEIN L3 5911  
108 3O58 6 C 60S ribosomal protein L3 4932  
109 3O5H 6 C 60S ribosomal protein L3 4932  
110 1YL3 5 E 50S ribosomal protein L3 300852  
111 2B66 4 E 50S ribosomal protein L3 274  
112 2B9N 4 E 50S ribosomal protein L3 274  
113 2B9P 4 E 50S ribosomal protein L3 274  
114 4W20 2 B Ribosomal protein uL3 9823  
115 4W22 2 B Ribosomal protein uL3 9823  
116 4W25 2 B Ribosomal protein uL3 9823  
117 4W27 2 B Ribosomal protein uL3 9823  
118 4UPX 2 B 60S RIBOSOMAL PROTEIN L3 9986  
119 4UQ1 2 B 60S RIBOSOMAL PROTEIN L3 9986  
120 1VX7 2 E 60S ribosomal protein uL3 36329  
121 1VXV 3 C 60S ribosomal protein L3 4932  
122 1VXY 3 C 60S ribosomal protein L3 4932  
123 1VW8 3 C 60S ribosomal protein L3 580240  
124 1VWU 3 C 60S ribosomal protein L3 580240  
125 4CXD 2 B 60S RIBOSOMAL PROTEIN L3 9986  
126 4CUW 2 B UL3 RIBOSOMAL PROTEIN UL3 28985  
127 3J65 3 C 60S ribosomal protein L3 4932  
128 3J61 35 B 60S ribosomal protein L3 4565  
129 4BYN 2 B 60S RIBOSOMAL PROTEIN L3 4932  
130 4BYU 2 B 60S RIBOSOMAL PROTEIN L3 4932  
131 3J44 8 C 50S ribosomal protein L3P SEE REMARK 999 2190  
132 3J39 26 B 60S ribosomal protein L3 7227  
133 3J3B 26 B 60S ribosomal protein L3 9606  
134 3ZF7 24 f RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE 185431  
135 3J21 3 C 50S ribosomal protein L3P 186497  
136 4B6A 2 B 60S RIBOSOMAL PROTEIN L3 559292  
137 4ADX 12 B RPL3 187420  
138 3IZS 3 C 60S ribosomal protein rpL3 (L3p) 4932  
139 3JYW 8 C 60S ribosomal protein L3 5541  
140 2ZKR 30 b 60S Ribosomal protein L3 9615  
141 1S1I 5 C 60S ribosomal protein L3 4932  
142 1ML5 29 e 50S RIBOSOMAL PROTEIN L3 562  
143 1GIY 5 E 50S RIBOSOMAL PROTEIN L3 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 617
95% 36 68 457
90% 36 68 481
70% 36 68 516
50% 36 139 233
40% 36 139 261
30% 39 453 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47408
95% 1 1 33295
90% 1 1 31841
70% 36 68 509
50% 36 137 237
40% 36 137 270
30% 36 137 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 401
90% 36 74 426
70% 36 74 453
50% 36 74 500
40% 36 74 535
30% 38 445 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 399
90% 36 74 424
70% 36 74 451
50% 36 76 482
40% 36 76 514
30% 36 78 506
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 459
90% 36 68 484
70% 36 68 519
50% 36 70 545
40% 36 70 578
30% 36 70 576
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1634
95% 36 68 455
90% 36 68 479
70% 36 68 514
50% 36 68 574
40% 36 70 577
30% 36 71 558
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 461
90% 36 68 486
70% 36 68 521
50% 36 70 547
40% 36 70 581
30% 36 71 561
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 332
95% 36 68 452
90% 36 68 477
70% 36 68 512
50% 36 68 571
40% 36 68 609
30% 36 140 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 404
90% 36 74 429
70% 36 74 457
50% 36 76 484
40% 36 78 496
30% 38 386 69
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 403
90% 36 74 428
70% 36 74 456
50% 36 146 215
40% 36 146 244
30% 36 146 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 307
95% 34 70 438
90% 34 70 460
70% 34 70 494
50% 34 70 549
40% 34 70 583
30% 34 70 578
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 405
90% 36 74 430
70% 36 74 458
50% 36 74 504
40% 36 74 538
30% 36 74 538
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 453
90% 36 68 478
70% 36 68 513
50% 36 68 572
40% 36 70 576
30% 36 71 557
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 523
50% 36 68 579
40% 36 68 616
30% 36 68 607
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50340
95% 3 5 11135
90% 3 5 10956
70% 3 5 10360
50% 3 5 9313
40% 3 5 8493
30% 3 5 7456
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55898
95% 1 1 39028
90% 1 1 37332
70% 3 21 2215
50% 7 30 1506
40% 7 92 409
30% 26 115 332
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 525
50% 36 69 562
40% 36 69 601
30% 36 69 596
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57165
95% 36 68 466
90% 36 68 491
70% 36 68 526
50% 36 139 235
40% 36 139 263
30% 36 139 278
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 462
90% 36 68 487
70% 36 68 522
50% 36 68 578
40% 36 68 615
30% 36 138 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 476
70% 36 68 511
50% 36 68 569
40% 36 138 266
30% 39 448 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1617
95% 35 67 469
90% 35 67 494
70% 35 67 532
50% 35 136 242
40% 35 138 265
30% 35 138 284
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41787
95% 36 74 394
90% 36 74 420
70% 36 74 448
50% 36 74 495
40% 36 143 250
30% 36 143 264
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7624
95% 36 74 397
90% 36 74 422
70% 36 74 450
50% 36 74 497
40% 36 76 513
30% 36 77 511
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 400
90% 36 74 425
70% 36 74 452
50% 36 74 498
40% 36 143 251
30% 36 143 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1644
95% 3 21 2158
90% 36 68 483
70% 36 68 518
50% 51 97 296
40% 57 106 285
30% 57 108 302
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49370
95% 1 1 34396
90% 1 7 7917
70% 3 27 1633
50% 36 74 499
40% 36 78 493
30% 36 78 508
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 402
90% 36 74 427
70% 36 74 454
50% 36 74 501
40% 37 77 504
30% 37 78 509
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.