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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 248 Members. Sequence cutoff: 40% Cluster size: 132 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 4 B 50S ribosomal protein L3P 272569  
2 1VQO 5 B 50S ribosomal protein L3P 2238  
3 1VQ8 5 B 50S ribosomal protein L3P 2238  
4 1S72 4 B 50S ribosomal protein L3P 2238  
5 1JJ2 4 B RIBOSOMAL PROTEIN L3 2238  
6 1YHQ 4 B 50S ribosomal protein L3P 2238  
7 1VQP 5 B 50S ribosomal protein L3P 2238  
8 1VQM 5 B 50S ribosomal protein L3P 2238  
9 3CC2 2 B 50S ribosomal protein L3P 2238  
10 1VQL 5 B 50S ribosomal protein L3P 2238  
11 1VQK 5 B 50S ribosomal protein L3P 2238  
12 1VQN 6 B 50S ribosomal protein L3P 2238  
13 1YIJ 4 B 50S ribosomal protein L3P 2238  
14 1YI2 4 B 50S ribosomal protein L3P 2238  
15 1VQ9 5 B 50S ribosomal protein L3P 2238  
16 1VQ7 5 B 50S ribosomal protein L3P 2238  
17 3CCM 2 B 50S ribosomal protein L3P 2238  
18 1VQ5 5 B 50S ribosomal protein L3P 2238  
19 3CCJ 2 B 50S ribosomal protein L3P 2238  
20 3CC7 2 B 50S ribosomal protein L3P 2238  
21 1YIT 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
22 3CCE 2 B 50S ribosomal protein L3P 2238  
23 3G6E 3 B 50S ribosomal protein L3P 2238  
24 3CPW 4 B 50S ribosomal protein L3P 2238  
25 3CCU 2 B 50S ribosomal protein L3P 2238  
26 1VQ6 6 B 50S ribosomal protein L3P 2238  
27 1M90 5 D RIBOSOMAL PROTEIN L3 2238  
28 3CCL 2 B 50S ribosomal protein L3P 2238  
29 1YJW 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
30 1YJ9 4 B 50S ribosomal protein L3P 2238  
31 3CD6 2 B 50S ribosomal protein L3P 2238  
32 3CCV 2 B 50S ribosomal protein L3P 2238  
33 3CC4 2 B 50S ribosomal protein L3P 2238  
34 2OTL 4 B 50S ribosomal protein L3P 2238  
35 3G71 3 B 50S ribosomal protein L3P 2238  
36 1FFK 4 B RIBOSOMAL PROTEIN L3 2238  
37 1VQ4 5 B 50S ribosomal protein L3P 2238  
38 1YJN 4 B 50S ribosomal protein L3P 2238  
39 3CMA 2 B 50S ribosomal protein L3P 2238  
40 3CCS 2 B 50S ribosomal protein L3P 2238  
41 3CCQ 2 B 50S ribosomal protein L3P 2238  
42 3I56 2 B 50S ribosomal protein L3P 2238  
43 3CCR 2 B 50S ribosomal protein L3P 2238  
44 2OTJ 4 B 50S ribosomal protein L3P 2238  
45 4V88 40 BB, DB 60S ribosomal protein L3 559292  
46 1KQS 6 B RIBOSOMAL PROTEIN L3 2238  
47 3OW2 4 B 50S ribosomal protein L3P 2238  
48 4U4R 40 L3, l3 60S ribosomal protein L3 559292  
49 3CXC 5 B RIBOSOMAL PROTEIN L3 2238  
50 1QVG 5 B 50S ribosomal protein L3P 2238  
51 3CME 2 B 50S ribosomal protein L3P 2238  
52 2QEX 4 B 50S ribosomal protein L3P 2238  
53 4U3U 40 L3, l3 60S ribosomal protein L3 559292  
54 1KC8 4 D RIBOSOMAL PROTEIN L3 2238  
55 4U3M 40 L3, l3 60S ribosomal protein L3 559292  
56 1N8R 4 D 50S ribosomal protein L3P 2238  
57 4U3N 40 L3, l3 60S ribosomal protein L3 559292  
58 1Q81 5 D 50S ribosomal protein L3P 2238  
59 1Q82 5 D 50S ribosomal protein L3P 2238  
60 1QVF 5 B 50S ribosomal protein L3P 2238  
61 4U52 40 L3, l3 60S ribosomal protein L3 559292  
62 4U4Q 40 L3, l3 60S ribosomal protein L3 559292  
63 1NJI 4 D 50S ribosomal protein L3P 2238  
64 4U6F 40 L3, l3 60S ribosomal protein L3 559292  
65 4U4U 40 L3, l3 60S ribosomal protein L3 559292  
66 1K73 4 D RIBOSOMAL PROTEIN L3 2238  
67 4U4Z 40 L3, l3 60S ribosomal protein L3 559292  
68 4U4Y 40 L3, l3 60S ribosomal protein L3 559292  
69 4U4N 40 L3, l3 60S ribosomal protein L3 559292  
70 4U55 40 L3, l3 60S ribosomal protein L3 559292  
71 1K9M 4 D RIBOSOMAL PROTEIN L3 2238  
72 1KD1 4 D RIBOSOMAL PROTEIN L3 2238  
73 3I55 3 B 50S ribosomal protein L3P 2238  
74 4U51 40 L3, l3 60S ribosomal protein L3 559292  
75 1K8A 4 D RIBOSOMAL PROTEIN L3 2238  
76 4U53 40 L3, l3 60S ribosomal protein L3 559292  
77 1Q86 5 D 50S ribosomal protein L3P 2238  
78 4U50 40 L3, l3 60S ribosomal protein L3 559292  
79 1M1K 4 D RIBOSOMAL PROTEIN L3 2238  
80 3G4S 3 B 50S ribosomal protein L3P 2238  
81 1W2B 7 B 50S RIBOSOMAL PROTEIN L3P 2238  
82 4U56 40 L3, l3 60S ribosomal protein L3 559292  
83 2QA4 4 B 50S ribosomal protein L3P 2238  
84 1Q7Y 5 D 50S ribosomal protein L3P 2238  
85 4U4O 40 L3, l3 60S ribosomal protein L3 559292  
86 4V8P 23 BB, CB, EB, GB RIBOSOMAL PROTEIN L3 5911  
87 4V7R 34 BC, DC 60S ribosomal protein L3 4932  
88 4V4P 5 AE 50S ribosomal protein L3 300852  
89 4V4R 29 BE 50S ribosomal protein L3 274  
90 4V4S 29 BE 50S ribosomal protein L3 274  
91 4V4T 28 BE 50S ribosomal protein L3 274  
92 3JAN 35 B Ribosomal protein uL3 SEE REMARK 999 9986  
93 3JAJ 35 B Ribosomal protein uL3 SEE REMARK 999 9986  
94 3JAG 2 B uL3 9986  
95 3JAH 2 B uL3 9986  
96 3JAI 2 B uL3 9986  
97 4UG0 5 LB 60S RIBOSOMAL PROTEIN L3 9606  
98 5AJ0 4 AB 60S ribosomal protein L3 9606  
99 3J92 2 B uL3 9986  
100 4D67 2 B 60S RIBOSOMAL PROTEIN L3 9986  
101 4D5Y 2 B 60S RIBOSOMAL PROTEIN UL3 9986  
102 4V3P 80 LC Ribosomal protein L3 4565  
103 3J7O 5 B Ribosomal protein uL3 9823  
104 3J7P 5 B Ribosomal protein uL3 9823  
105 3J7Q 5 B Ribosomal protein uL3 9823  
106 3J7R 5 B Ribosomal protein uL3 9823  
107 4UJC 8 BB 60S RIBOSOMAL PROTEIN L3 9986  
108 4UJD 5 AB 60S RIBOSOMAL PROTEIN L3 9986  
109 3J79 5 E 60S ribosomal protein uL3 36329  
110 3J77 3 L3 60S ribosomal protein L3 4932  
111 3J78 3 L3 60S ribosomal protein L3 4932  
112 3J6X 6 L3 60S ribosomal protein L3 580240  
113 3J6Y 6 L3 60S ribosomal protein L3 580240  
114 4UJE 39 CB 60S RIBOSOMAL PROTEIN L3 9986  
115 4V91 5 B UL3 RIBOSOMAL PROTEIN UL3 28985  
116 4V7F 6 C 60S ribosomal protein L3 4932  
117 4V7E 71 CB 60S ribosomal protein L3 4565  
118 4V8Y 36 BB 60S RIBOSOMAL PROTEIN L3 4932  
119 4V8Z 36 BB 60S RIBOSOMAL PROTEIN L3 4932  
120 4V4N 45 AC 50S ribosomal protein L3P SEE REMARK 999 2190  
121 4V6W 63 CB 60S ribosomal protein L3 7227  
122 4V6X 63 CB 60S ribosomal protein L3 9606  
123 4V8M 65 Bf RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE 185431  
124 4V6U 33 BC 50S ribosomal protein L3P 186497  
125 4V8T 2 B 60S RIBOSOMAL PROTEIN L3 559292  
126 4ADX 12 B RPL3 187420  
127 4V6I 32 BC 60S ribosomal protein rpL3 (L3p) 4932  
128 4V7H 27 BC 60S ribosomal protein L3 5541  
129 4V5Z 54 Bb 60S Ribosomal protein L3 9615  
130 4V4B 22 BC 60S ribosomal protein L3 4932  
131 1ML5 29 e 50S RIBOSOMAL PROTEIN L3 562  
132 4V42 29 BE 50S RIBOSOMAL PROTEIN L3 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 686
95% 36 68 489
90% 36 68 512
70% 36 68 562
50% 36 128 228
40% 36 128 257
30% 41 366 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50864
95% 1 1 35618
90% 1 1 34004
70% 36 68 555
50% 36 126 236
40% 36 126 264
30% 36 126 279
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 426
90% 36 74 452
70% 36 74 488
50% 36 74 557
40% 36 74 598
30% 40 358 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 423
90% 36 74 450
70% 36 74 485
50% 36 76 534
40% 36 76 576
30% 36 78 553
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 491
90% 36 68 515
70% 36 68 565
50% 36 70 613
40% 36 70 650
30% 36 70 646
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1777
95% 36 68 487
90% 36 68 510
70% 36 68 560
50% 36 68 644
40% 36 70 647
30% 36 71 628
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 492
90% 36 68 516
70% 36 68 566
50% 36 70 615
40% 36 70 652
30% 36 71 630
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 343
95% 36 68 485
90% 36 68 508
70% 36 68 558
50% 36 68 641
40% 36 68 674
30% 36 129 268
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 431
90% 36 74 457
70% 36 74 494
50% 36 76 538
40% 36 78 551
30% 40 310 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 429
90% 36 74 455
70% 36 74 492
50% 36 135 218
40% 36 135 242
30% 36 135 257
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 320
95% 34 70 467
90% 34 70 490
70% 34 70 539
50% 34 70 616
40% 34 70 653
30% 34 70 648
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 301
95% 36 74 432
90% 36 74 458
70% 36 74 495
50% 36 74 564
40% 36 74 603
30% 36 74 598
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 486
90% 36 68 509
70% 36 68 559
50% 36 68 642
40% 36 70 646
30% 36 71 627
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 494
90% 36 68 518
70% 36 68 568
50% 36 68 648
40% 36 68 678
30% 36 68 677
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53905
95% 3 5 11947
90% 3 5 11733
70% 3 5 11070
50% 3 5 9935
40% 3 5 9080
30% 3 5 7930
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59685
95% 1 1 41537
90% 1 1 39665
70% 3 21 2390
50% 7 30 1617
40% 7 84 400
30% 26 107 328
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 336
95% 36 68 496
90% 36 68 520
70% 36 68 570
50% 36 69 633
40% 36 69 669
30% 36 69 666
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60994
95% 36 68 497
90% 36 68 521
70% 36 68 571
50% 36 128 229
40% 36 128 258
30% 36 128 271
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 493
90% 36 68 517
70% 36 68 567
50% 36 68 647
40% 36 68 677
30% 36 127 275
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 484
90% 36 68 507
70% 36 68 557
50% 36 68 640
40% 36 127 261
30% 41 361 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1756
95% 36 68 481
90% 36 68 504
70% 36 68 554
50% 36 126 235
40% 36 128 255
30% 36 128 270
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44924
95% 36 74 416
90% 36 74 443
70% 36 74 481
50% 36 74 550
40% 36 132 248
30% 36 132 262
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8295
95% 36 74 420
90% 36 74 447
70% 36 74 484
50% 36 74 552
40% 36 76 572
30% 36 77 561
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 425
90% 36 74 451
70% 36 74 486
50% 36 74 555
40% 37 134 244
30% 37 134 259
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1788
95% 3 21 2334
90% 36 68 514
70% 36 68 564
50% 51 95 328
40% 58 105 302
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52908
95% 1 1 36757
90% 1 7 8478
70% 3 27 1758
50% 36 74 556
40% 36 79 538
30% 36 79 544
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 427
90% 36 74 453
70% 36 74 491
50% 36 74 560
40% 37 77 562
30% 37 78 556
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.