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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 269 Members. Sequence cutoff: 30% Cluster size: 127 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 4 B 50S ribosomal protein L3P 272569  
2 1VQO 5 B 50S ribosomal protein L3P 2238  
3 1VQ8 5 B 50S ribosomal protein L3P 2238  
4 1S72 4 B 50S ribosomal protein L3P 2238  
5 1JJ2 4 B RIBOSOMAL PROTEIN L3 2238  
6 1YHQ 4 B 50S ribosomal protein L3P 2238  
7 1VQP 5 B 50S ribosomal protein L3P 2238  
8 1VQM 5 B 50S ribosomal protein L3P 2238  
9 3CC2 2 B 50S ribosomal protein L3P 2238  
10 1VQL 5 B 50S ribosomal protein L3P 2238  
11 1VQK 5 B 50S ribosomal protein L3P 2238  
12 1VQN 6 B 50S ribosomal protein L3P 2238  
13 1YIJ 4 B 50S ribosomal protein L3P 2238  
14 1YI2 4 B 50S ribosomal protein L3P 2238  
15 1VQ9 5 B 50S ribosomal protein L3P 2238  
16 1VQ7 5 B 50S ribosomal protein L3P 2238  
17 3CCM 2 B 50S ribosomal protein L3P 2238  
18 1VQ5 5 B 50S ribosomal protein L3P 2238  
19 3CCJ 2 B 50S ribosomal protein L3P 2238  
20 3CC7 2 B 50S ribosomal protein L3P 2238  
21 1YIT 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
22 3CCE 2 B 50S ribosomal protein L3P 2238  
23 3G6E 3 B 50S ribosomal protein L3P 2238  
24 3CPW 4 B 50S ribosomal protein L3P 2238  
25 3CCU 2 B 50S ribosomal protein L3P 2238  
26 1VQ6 6 B 50S ribosomal protein L3P 2238  
27 1M90 5 D RIBOSOMAL PROTEIN L3 2238  
28 3CCL 2 B 50S ribosomal protein L3P 2238  
29 1YJW 8 B 50S RIBOSOMAL PROTEIN L3P 2238  
30 1YJ9 4 B 50S ribosomal protein L3P 2238  
31 3CD6 2 B 50S ribosomal protein L3P 2238  
32 3CCV 2 B 50S ribosomal protein L3P 2238  
33 3CC4 2 B 50S ribosomal protein L3P 2238  
34 2OTL 4 B 50S ribosomal protein L3P 2238  
35 3G71 3 B 50S ribosomal protein L3P 2238  
36 1FFK 4 B RIBOSOMAL PROTEIN L3 2238  
37 1VQ4 5 B 50S ribosomal protein L3P 2238  
38 1YJN 4 B 50S ribosomal protein L3P 2238  
39 3CMA 2 B 50S ribosomal protein L3P 2238  
40 3CCS 2 B 50S ribosomal protein L3P 2238  
41 3CCQ 2 B 50S ribosomal protein L3P 2238  
42 3I56 2 B 50S ribosomal protein L3P 2238  
43 3CCR 2 B 50S ribosomal protein L3P 2238  
44 2OTJ 4 B 50S ribosomal protein L3P 2238  
45 4V88 40 BB, DB 60S ribosomal protein L3 559292  
46 1KQS 6 B RIBOSOMAL PROTEIN L3 2238  
47 3OW2 4 B 50S ribosomal protein L3P 2238  
48 4U4R 40 L3, l3 60S ribosomal protein L3 559292  
49 3CXC 5 B RIBOSOMAL PROTEIN L3 2238  
50 1QVG 5 B 50S ribosomal protein L3P 2238  
51 3CME 2 B 50S ribosomal protein L3P 2238  
52 2QEX 4 B 50S ribosomal protein L3P 2238  
53 4U3U 40 L3, l3 60S ribosomal protein L3 559292  
54 1KC8 4 D RIBOSOMAL PROTEIN L3 2238  
55 4U3M 40 L3, l3 60S ribosomal protein L3 559292  
56 1N8R 4 D 50S ribosomal protein L3P 2238  
57 4U3N 40 L3, l3 60S ribosomal protein L3 559292  
58 1Q81 5 D 50S ribosomal protein L3P 2238  
59 1Q82 5 D 50S ribosomal protein L3P 2238  
60 1QVF 5 B 50S ribosomal protein L3P 2238  
61 4U52 40 L3, l3 60S ribosomal protein L3 559292  
62 4U4Q 40 L3, l3 60S ribosomal protein L3 559292  
63 1NJI 4 D 50S ribosomal protein L3P 2238  
64 4U6F 40 L3, l3 60S ribosomal protein L3 559292  
65 4U4U 40 L3, l3 60S ribosomal protein L3 559292  
66 1K73 4 D RIBOSOMAL PROTEIN L3 2238  
67 4U4Z 40 L3, l3 60S ribosomal protein L3 559292  
68 4U4Y 40 L3, l3 60S ribosomal protein L3 559292  
69 4U4N 40 L3, l3 60S ribosomal protein L3 559292  
70 4U55 40 L3, l3 60S ribosomal protein L3 559292  
71 1K9M 4 D RIBOSOMAL PROTEIN L3 2238  
72 1KD1 4 D RIBOSOMAL PROTEIN L3 2238  
73 3I55 3 B 50S ribosomal protein L3P 2238  
74 4U51 40 L3, l3 60S ribosomal protein L3 559292  
75 1K8A 4 D RIBOSOMAL PROTEIN L3 2238  
76 4U53 40 L3, l3 60S ribosomal protein L3 559292  
77 1Q86 5 D 50S ribosomal protein L3P 2238  
78 4U50 40 L3, l3 60S ribosomal protein L3 559292  
79 1M1K 4 D RIBOSOMAL PROTEIN L3 2238  
80 3G4S 3 B 50S ribosomal protein L3P 2238  
81 1W2B 7 B 50S RIBOSOMAL PROTEIN L3P 2238  
82 4U56 40 L3, l3 60S ribosomal protein L3 559292  
83 2QA4 4 B 50S ribosomal protein L3P 2238  
84 1Q7Y 5 D 50S ribosomal protein L3P 2238  
85 4U4O 40 L3, l3 60S ribosomal protein L3 559292  
86 4V8P 23 BB, CB, EB, GB RIBOSOMAL PROTEIN L3 5911  
87 4V7R 34 BC, DC 60S ribosomal protein L3 4932  
88 4V4P 5 AE 50S ribosomal protein L3 300852  
89 4V4R 29 BE 50S ribosomal protein L3 274  
90 4V4S 29 BE 50S ribosomal protein L3 274  
91 4V4T 28 BE 50S ribosomal protein L3 274  
92 4UG0 5 LB 60S RIBOSOMAL PROTEIN L3 9606  
93 5AJ0 4 AB 60S ribosomal protein L3 9606  
94 3J92 2 B uL3 9986  
95 4D67 2 B 60S RIBOSOMAL PROTEIN L3 9986  
96 4D5Y 2 B 60S RIBOSOMAL PROTEIN UL3 9986  
97 4V3P 80 LC Ribosomal protein L3 4565  
98 3J7O 5 B Ribosomal protein uL3 9823  
99 3J7P 5 B Ribosomal protein uL3 9823  
100 3J7Q 5 B Ribosomal protein uL3 9823  
101 3J7R 5 B Ribosomal protein uL3 9823  
102 4UJC 8 BB 60S RIBOSOMAL PROTEIN L3 9986  
103 4UJD 5 AB 60S RIBOSOMAL PROTEIN L3 9986  
104 3J79 5 E 60S ribosomal protein uL3 36329  
105 3J77 3 L3 60S ribosomal protein L3 4932  
106 3J78 3 L3 60S ribosomal protein L3 4932  
107 3J6X 6 L3 60S ribosomal protein L3 580240  
108 3J6Y 6 L3 60S ribosomal protein L3 580240  
109 4UJE 39 CB 60S RIBOSOMAL PROTEIN L3 9986  
110 4V91 5 B UL3 RIBOSOMAL PROTEIN UL3 28985  
111 4V7F 6 C 60S ribosomal protein L3 4932  
112 4V7E 71 CB 60S ribosomal protein L3 4565  
113 4V8Y 36 BB 60S RIBOSOMAL PROTEIN L3 4932  
114 4V8Z 36 BB 60S RIBOSOMAL PROTEIN L3 4932  
115 4V4N 45 AC 50S ribosomal protein L3P SEE REMARK 999 2190  
116 4V6W 63 CB 60S ribosomal protein L3 7227  
117 4V6X 63 CB 60S ribosomal protein L3 9606  
118 4V8M 65 Bf RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE 185431  
119 4V6U 33 BC 50S ribosomal protein L3P 186497  
120 4V8T 2 B 60S RIBOSOMAL PROTEIN L3 559292  
121 4ADX 12 B RPL3 187420  
122 4V6I 32 BC 60S ribosomal protein rpL3 (L3p) 4932  
123 4V7H 27 BC 60S ribosomal protein L3 5541  
124 4V5Z 54 Bb 60S Ribosomal protein L3 9615  
125 4V4B 22 BC 60S ribosomal protein L3 4932  
126 1ML5 29 e 50S RIBOSOMAL PROTEIN L3 562  
127 4V42 29 BE 50S RIBOSOMAL PROTEIN L3 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 680
95% 36 68 483
90% 36 68 506
70% 36 68 546
50% 36 123 238
40% 36 123 267
30% 41 360 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50394
95% 1 1 35302
90% 1 1 33721
70% 36 68 539
50% 36 121 245
40% 36 121 272
30% 36 121 289
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 420
90% 36 74 447
70% 36 74 480
50% 36 74 534
40% 36 74 576
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 418
90% 36 74 445
70% 36 74 477
50% 36 76 507
40% 36 76 552
30% 36 78 535
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 509
70% 36 68 549
50% 36 70 595
40% 36 70 632
30% 36 70 632
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1758
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 68 626
40% 36 70 631
30% 36 71 611
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 486
90% 36 68 510
70% 36 68 551
50% 36 70 597
40% 36 70 635
30% 36 71 612
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 623
40% 36 68 656
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 424
90% 36 74 451
70% 36 74 485
50% 36 76 510
40% 36 78 528
30% 40 309 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 422
90% 36 74 449
70% 36 74 483
50% 36 130 223
40% 36 130 248
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 317
95% 34 70 463
90% 34 70 485
70% 34 70 520
50% 34 70 598
40% 34 70 636
30% 34 70 634
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 300
95% 36 74 425
90% 36 74 452
70% 36 74 486
50% 36 74 541
40% 36 74 582
30% 36 74 577
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 68 624
40% 36 70 630
30% 36 71 610
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 488
90% 36 68 512
70% 36 68 553
50% 36 68 629
40% 36 68 660
30% 36 68 657
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53419
95% 3 5 11800
90% 3 5 11604
70% 3 5 10955
50% 3 5 9834
40% 3 5 8984
30% 3 5 7849
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59170
95% 1 1 41194
90% 1 1 39352
70% 3 21 2365
50% 7 30 1605
40% 7 79 410
30% 26 102 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 490
90% 36 68 514
70% 36 68 555
50% 36 69 615
40% 36 69 650
30% 36 69 647
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60478
95% 36 68 491
90% 36 68 515
70% 36 68 556
50% 36 123 239
40% 36 123 268
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 487
90% 36 68 511
70% 36 68 552
50% 36 68 628
40% 36 68 659
30% 36 122 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 622
40% 36 122 270
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1738
95% 36 68 475
90% 36 68 498
70% 36 68 536
50% 36 121 244
40% 36 123 266
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44491
95% 36 74 411
90% 36 74 438
70% 36 74 473
50% 36 74 525
40% 36 127 255
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8206
95% 36 74 415
90% 36 74 442
70% 36 74 476
50% 36 74 527
40% 36 76 547
30% 36 77 541
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 419
90% 36 74 446
70% 36 74 478
50% 36 74 531
40% 36 128 251
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1769
95% 3 21 2313
90% 36 68 508
70% 36 68 548
50% 51 95 319
40% 58 105 298
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52428
95% 1 1 36435
90% 1 7 8388
70% 3 27 1741
50% 36 74 532
40% 36 79 517
30% 36 79 527
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 421
90% 36 74 448
70% 36 74 482
50% 36 74 536
40% 37 77 538
30% 37 78 536
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.