Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 231
40 % 36 138 258
30 % 43 417 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53956
95 % 1 1 37687
90 % 1 1 35923
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 457
90 % 36 74 483
70 % 36 74 526
50 % 36 74 603
40 % 36 74 652
30 % 42 406 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 455
90 % 36 74 481
70 % 36 74 523
50 % 36 76 579
40 % 36 76 624
30 % 36 78 599
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 706
30 % 36 70 707
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1903
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 703
30 % 36 71 687
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 708
30 % 36 71 690
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 725
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 76 581
40 % 36 78 597
30 % 42 351 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 460
90 % 36 74 486
70 % 36 74 531
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 709
30 % 34 70 709
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 463
90 % 36 74 489
70 % 36 74 534
50 % 36 74 610
40 % 36 74 659
30 % 36 74 650
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 702
30 % 36 71 686
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 728
30 % 36 68 729
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57082
95 % 3 5 12676
90 % 3 5 12439
70 % 3 5 11713
50 % 3 5 10502
40 % 3 5 9582
30 % 3 5 8353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63043
95 % 1 1 43760
90 % 1 1 41723
70 % 3 21 2551
50 % 7 30 1716
40 % 7 91 390
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 720
30 % 36 69 723
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64384
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 727
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 412 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1881
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47698
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8845
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 622
30 % 36 77 610
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1915
95 % 3 21 2493
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56064
95 % 1 1 38858
90 % 1 7 9001
70 % 3 27 1871
50 % 36 74 602
40 % 36 79 583
30 % 36 79 589
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 458
90 % 36 74 484
70 % 36 74 529
50 % 36 74 607
40 % 37 77 609
30 % 37 78 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 4 B 50S ribosomal protein L3P 2238
2 1VQO 5 B 50S ribosomal protein L3P 2238
3 1VQ8 5 B 50S ribosomal protein L3P 2238
4 1S72 4 B 50S ribosomal protein L3P 2238
5 1JJ2 4 B RIBOSOMAL PROTEIN L3 2238
6 1YHQ 4 B 50S ribosomal protein L3P 2238
7 1VQP 5 B 50S ribosomal protein L3P 2238
8 1VQM 5 B 50S ribosomal protein L3P 2238
9 3CC2 2 B 50S ribosomal protein L3P 2238
10 1VQL 5 B 50S ribosomal protein L3P 2238
11 1VQK 5 B 50S ribosomal protein L3P 2238
12 1VQN 6 B 50S ribosomal protein L3P 2238
13 1YIJ 4 B 50S ribosomal protein L3P 2238
14 1YI2 4 B 50S ribosomal protein L3P 2238
15 1VQ9 5 B 50S ribosomal protein L3P 2238
16 1VQ7 5 B 50S ribosomal protein L3P 2238
17 3CCM 2 B 50S ribosomal protein L3P 2238
18 1VQ5 5 B 50S ribosomal protein L3P 2238
19 3CCJ 2 B 50S ribosomal protein L3P 2238
20 3CC7 2 B 50S ribosomal protein L3P 2238
21 1YIT 8 B 50S RIBOSOMAL PROTEIN L3P 2238
22 3CCE 2 B 50S ribosomal protein L3P 2238
23 3G6E 3 B 50S ribosomal protein L3P 2238
24 3CPW 4 B 50S ribosomal protein L3P 2238
25 3CCU 2 B 50S ribosomal protein L3P 2238
26 1VQ6 6 B 50S ribosomal protein L3P 2238
27 1M90 5 D RIBOSOMAL PROTEIN L3 2238
28 3CCL 2 B 50S ribosomal protein L3P 2238
29 1YJW 8 B 50S RIBOSOMAL PROTEIN L3P 2238
30 1YJ9 4 B 50S ribosomal protein L3P 2238
31 3CD6 2 B 50S ribosomal protein L3P 2238
32 3CCV 2 B 50S ribosomal protein L3P 2238
33 3CC4 2 B 50S ribosomal protein L3P 2238
34 2OTL 4 B 50S ribosomal protein L3P 2238
35 3G71 3 B 50S ribosomal protein L3P 2238
36 1FFK 4 B RIBOSOMAL PROTEIN L3 2238
37 1VQ4 5 B 50S ribosomal protein L3P 2238
38 1YJN 4 B 50S ribosomal protein L3P 2238
39 3CMA 2 B 50S ribosomal protein L3P 2238
40 3CCS 2 B 50S ribosomal protein L3P 2238
41 3CCQ 2 B 50S ribosomal protein L3P 2238
42 3I56 2 B 50S ribosomal protein L3P 2238
43 3CCR 2 B 50S ribosomal protein L3P 2238
44 2OTJ 4 B 50S ribosomal protein L3P 2238
45 4V88 40 BB, DB 60S ribosomal protein L3 4932
46 1KQS 6 B RIBOSOMAL PROTEIN L3 2238
47 3OW2 4 B 50S ribosomal protein L3P 2238
48 4U4R 40 L3, l3 60S ribosomal protein L3 4932
49 3CXC 5 B RIBOSOMAL PROTEIN L3 2238
50 1QVG 5 B 50S ribosomal protein L3P 2238
51 3CME 2 B 50S ribosomal protein L3P 2238
52 2QEX 4 B 50S ribosomal protein L3P 2238
53 4U3U 40 L3, l3 60S ribosomal protein L3 4932
54 1KC8 4 D RIBOSOMAL PROTEIN L3 2238
55 4U3M 40 L3, l3 60S ribosomal protein L3 4932
56 1N8R 4 D 50S ribosomal protein L3P 2238
57 4U3N 40 L3, l3 60S ribosomal protein L3 4932
58 1Q81 5 D 50S ribosomal protein L3P 2238
59 1Q82 5 D 50S ribosomal protein L3P 2238
60 1QVF 5 B 50S ribosomal protein L3P 2238
61 4U52 40 L3, l3 60S ribosomal protein L3 4932
62 4U4Q 40 L3, l3 60S ribosomal protein L3 4932
63 1NJI 4 D 50S ribosomal protein L3P 2238
64 4U6F 40 L3, l3 60S ribosomal protein L3 4932
65 4U4U 40 L3, l3 60S ribosomal protein L3 4932
66 1K73 4 D RIBOSOMAL PROTEIN L3 2238
67 4U4Z 40 L3, l3 60S ribosomal protein L3 4932
68 4U4Y 40 L3, l3 60S ribosomal protein L3 4932
69 4U4N 40 L3, l3 60S ribosomal protein L3 4932
70 4U55 40 L3, l3 60S ribosomal protein L3 4932
71 1K9M 4 D RIBOSOMAL PROTEIN L3 2238
72 1KD1 4 D RIBOSOMAL PROTEIN L3 2238
73 3I55 3 B 50S ribosomal protein L3P 2238
74 4U51 40 L3, l3 60S ribosomal protein L3 4932
75 1K8A 4 D RIBOSOMAL PROTEIN L3 2238
76 4U53 40 L3, l3 60S ribosomal protein L3 4932
77 1Q86 5 D 50S ribosomal protein L3P 2238
78 4U50 40 L3, l3 60S ribosomal protein L3 4932
79 1M1K 4 D RIBOSOMAL PROTEIN L3 2238
80 3G4S 3 B 50S ribosomal protein L3P 2238
81 1W2B 7 B 50S RIBOSOMAL PROTEIN L3P 2238
82 4U56 40 L3, l3 60S ribosomal protein L3 4932
83 2QA4 4 B 50S ribosomal protein L3P 2238
84 1Q7Y 5 D 50S ribosomal protein L3P 2238
85 4U4O 40 L3, l3 60S ribosomal protein L3 4932
86 4V8P 23 BB, CB, EB, GB RIBOSOMAL PROTEIN L3 5911
87 4V7R 34 BC, DC 60S ribosomal protein L3 4932
88 4V4P 5 AE 50S ribosomal protein L3 274
89 4V4R 29 BE 50S ribosomal protein L3 274
90 4V4S 29 BE 50S ribosomal protein L3 274
91 4V4T 28 BE 50S ribosomal protein L3 274
92 5GAK 17 F 60S ribosomal protein L3 4932
93 5FL8 2 B 60S ribosomal protein L3 4932
94 5APN 5 B 60S ribosomal protein L3 4932
95 5APO 5 B 60S ribosomal protein L3 4932
96 3JBN 70 AE 60S ribosomal protein uL3 5833
97 3JBO 70 AE 60S ribosomal protein uL3 5833
98 3JBP 70 AE 60S ribosomal protein uL3 5833
99 5AN9 1 A 60S RIBOSOMAL PROTEIN L3 44689
100 5ANB 1 A 60S RIBOSOMAL PROTEIN L3 44689
101 5ANC 1 A 60S RIBOSOMAL PROTEIN L3 44689
102 3JAN 35 B Ribosomal protein uL3 SEE REMARK 999 9986
103 3JAJ 35 B Ribosomal protein uL3 SEE REMARK 999 9986
104 3JAG 2 B uL3 9986
105 3JAH 2 B uL3 9986
106 3JAI 2 B uL3 9986
107 4UG0 5 LB 60S RIBOSOMAL PROTEIN L3 9606
108 5AJ0 4 AB 60S ribosomal protein L3 9606
109 3J92 2 B uL3 9986
110 4D67 2 B 60S RIBOSOMAL PROTEIN L3 9986
111 4D5Y 2 B 60S RIBOSOMAL PROTEIN UL3 9986
112 4V3P 80 LC Ribosomal protein L3 4565
113 3J7O 5 B Ribosomal protein uL3 9823
114 3J7P 5 B Ribosomal protein uL3 9823
115 3J7Q 5 B Ribosomal protein uL3 9823
116 3J7R 5 B Ribosomal protein uL3 9823
117 4UJC 8 BB 60S RIBOSOMAL PROTEIN L3 9986
118 4UJD 5 AB 60S RIBOSOMAL PROTEIN L3 9986
119 3J79 5 E 60S ribosomal protein uL3 5833
120 3J77 3 L3 60S ribosomal protein L3 4932
121 3J78 3 L3 60S ribosomal protein L3 4932
122 3J6X 6 L3 60S ribosomal protein L3 4932
123 3J6Y 6 L3 60S ribosomal protein L3 4932
124 4UJE 39 CB 60S RIBOSOMAL PROTEIN L3 9986
125 4V91 5 B UL3 RIBOSOMAL PROTEIN UL3 28985
126 4V7F 6 C 60S ribosomal protein L3 4932
127 4V7E 71 CB 60S ribosomal protein L3 4565
128 4V8Y 36 BB 60S RIBOSOMAL PROTEIN L3 4932
129 4V8Z 36 BB 60S RIBOSOMAL PROTEIN L3 4932
130 4V4N 45 AC 50S ribosomal protein L3P SEE REMARK 999 2190
131 4V6W 63 CB 60S ribosomal protein L3 7227
132 4V6X 63 CB 60S ribosomal protein L3 9606
133 4V8M 65 Bf RIBOSOMAL PROTEIN L3, MITOCHONDRIAL, PUTATIVE 185431
134 4V6U 33 BC 50S ribosomal protein L3P 2261
135 4V8T 2 B 60S RIBOSOMAL PROTEIN L3 4932
136 4ADX 12 B RPL3 145262
137 4V6I 32 BC 60S ribosomal protein rpL3 (L3p) 4932
138 4V7H 27 BC 60S ribosomal protein L3 5541
139 4V5Z 54 Bb 60S Ribosomal protein L3 9612
140 4V4B 22 BC 60S ribosomal protein L3 4932
141 1ML5 29 e 50S RIBOSOMAL PROTEIN L3 562
142 4V42 29 BE 50S RIBOSOMAL PROTEIN L3 274