Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CCJ 5 E 50S ribosomal protein L6P 2238
20 3CC7 5 E 50S ribosomal protein L6P 2238
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
22 3CCE 5 E 50S ribosomal protein L6P 2238
23 3G6E 6 E 50S ribosomal protein L6P 2238
24 3CPW 7 E 50S ribosomal protein L6P 2238
25 3CCU 5 E 50S ribosomal protein L6P 2238
26 1VQ6 9 E 50S ribosomal protein L6P 2238
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238
28 3CCL 5 E 50S ribosomal protein L6P 2238
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
30 1YJ9 7 E 50S ribosomal protein L6P 2238
31 3CD6 5 E 50S ribosomal protein L6P 2238
32 3CCV 5 E 50S ribosomal protein L6P 2238
33 3CC4 5 E 50S ribosomal protein L6P 2238
34 2OTL 7 E 50S ribosomal protein L6P 2238
35 3G71 6 E 50S ribosomal protein L6P 2238
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
37 1VQ4 8 E 50S ribosomal protein L6P 2238
38 1YJN 7 E 50S ribosomal protein L6P 2238
39 3CMA 5 E 50S ribosomal protein L6P 2238
40 3CCS 5 E 50S ribosomal protein L6P 2238
41 3CCQ 5 E 50S ribosomal protein L6P 2238
42 3I56 5 E 50S ribosomal protein L6P 2238
43 3CCR 5 E 50S ribosomal protein L6P 2238
44 2OTJ 7 E 50S ribosomal protein L6P 2238
45 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
46 3OW2 7 E 50S ribosomal protein L6P 2238
47 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
48 1QVG 8 E 50S ribosomal protein L6P 2238
49 3CME 5 E 50S ribosomal protein L6P 2238
50 2QEX 7 E 50S ribosomal protein L6P 2238
51 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
52 1N8R 7 G 50S ribosomal protein L6P 2238
53 1Q81 8 G 50S ribosomal protein L6P 2238
54 1Q82 8 G 50S ribosomal protein L6P 2238
55 1QVF 8 E 50S ribosomal protein L6P 2238
56 1NJI 7 G 50S ribosomal protein L6P 2238
57 1K73 7 G RIBOSOMAL PROTEIN L6 2238
58 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
59 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
60 3I55 6 E 50S ribosomal protein L6P 2238
61 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
62 1Q86 8 G 50S ribosomal protein L6P 2238
63 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
64 3G4S 6 E 50S ribosomal protein L6P 2238
65 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
66 2QA4 7 E 50S ribosomal protein L6P 2238
67 1Q7Y 8 G 50S ribosomal protein L6P 2238
68 4ADX 15 E RPL6 145262