Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 894
95 % 35 68 717 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 749
70 % 35 68 797
50 % 35 189 197
40 % 43 556 20
30 % 43 556 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62574
95 % 1 1 43638
90 % 1 1 41425
70 % 35 68 788
50 % 35 186 202
40 % 35 186 222
30 % 35 186 230
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 461
95 % 35 74 638 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 664
70 % 35 74 709
50 % 35 74 761
40 % 35 74 796
30 % 42 533 39
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 459
95 % 35 74 636 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 662
70 % 35 74 706
50 % 35 76 737
40 % 35 76 771
30 % 35 79 731
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 528
95 % 35 68 719 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 800
50 % 35 70 809
40 % 35 70 848
30 % 35 70 833
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2351
95 % 35 68 715 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 748
70 % 35 68 796
50 % 35 68 841
40 % 35 72 821
30 % 35 72 809
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 721 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 754
70 % 35 68 802
50 % 35 70 810
40 % 35 70 849
30 % 35 71 820
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 541
95 % 35 68 713 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 746
70 % 35 68 793
50 % 35 68 838
40 % 35 68 875
30 % 35 189 225
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 466
95 % 35 74 643 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 668
70 % 35 74 714
50 % 35 76 742
40 % 35 78 749
30 % 42 430 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 465
95 % 35 74 641 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 667
70 % 35 74 713
50 % 35 193 196
40 % 35 194 210
30 % 35 194 220
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 498
95 % 33 70 691 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 719
70 % 33 70 763
50 % 33 70 811
40 % 33 70 850
30 % 33 70 835
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 467
95 % 35 74 644 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 669
70 % 35 74 715
50 % 35 74 765
40 % 42 391 54
30 % 42 417 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 526
95 % 35 68 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 747
70 % 35 68 794
50 % 35 68 839
40 % 35 70 847
30 % 35 71 818
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 531
95 % 35 68 723 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 804
50 % 35 68 846
40 % 35 68 878
30 % 35 68 862
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66086
95 % 3 5 14878 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14604
70 % 3 5 13713
50 % 3 5 12177
40 % 3 5 11037
30 % 3 5 9585
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72627
95 % 1 1 50345
90 % 1 1 47740
70 % 3 21 3042
50 % 7 30 2030
40 % 7 139 281
30 % 26 162 254
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 532
95 % 35 68 724 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 805
50 % 35 69 824
40 % 35 69 861
30 % 35 69 847
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74087
95 % 35 68 725 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 758
70 % 35 68 806
50 % 35 182 205
40 % 35 182 224
30 % 35 182 235
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 530
95 % 35 68 722 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 755
70 % 35 68 803
50 % 35 68 845
40 % 35 68 877
30 % 35 178 239
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 525
95 % 35 68 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 744
70 % 35 68 791
50 % 35 68 837
40 % 35 186 219
30 % 43 546 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2333
95 % 35 68 710 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 742
70 % 35 68 787
50 % 35 180 207
40 % 35 182 223
30 % 35 182 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55467
95 % 35 74 628 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 656
70 % 35 74 701
50 % 35 74 752
40 % 35 193 211
30 % 35 193 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10518
95 % 35 74 631 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 659
70 % 35 74 703
50 % 35 74 754
40 % 35 76 766
30 % 36 78 746
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 460
95 % 35 74 637 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 663
70 % 35 74 707
50 % 35 74 759
40 % 36 189 215
30 % 36 189 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2364
95 % 3 21 3012 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 751
70 % 35 68 799
50 % 50 105 380
40 % 57 126 289
30 % 57 128 292
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64924
95 % 1 1 44950
90 % 1 7 10599
70 % 3 27 2270
50 % 35 74 760
40 % 35 79 736
30 % 35 79 734
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 463
95 % 35 74 639
90 % 35 74 665
70 % 35 74 711
50 % 35 74 764
40 % 36 77 760
30 % 36 78 750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CC7 5 E 50S ribosomal protein L6P 2238
20 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
21 3CCE 5 E 50S ribosomal protein L6P 2238
22 3G6E 6 E 50S ribosomal protein L6P 2238
23 3CPW 7 E 50S ribosomal protein L6P 2238
24 3CCU 5 E 50S ribosomal protein L6P 2238
25 1VQ6 9 E 50S ribosomal protein L6P 2238
26 1M90 8 G RIBOSOMAL PROTEIN L6 2238
27 3CCL 5 E 50S ribosomal protein L6P 2238
28 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
29 1YJ9 7 E 50S ribosomal protein L6P 2238
30 3CD6 5 E 50S ribosomal protein L6P 2238
31 3CCV 5 E 50S ribosomal protein L6P 2238
32 3CC4 5 E 50S ribosomal protein L6P 2238
33 2OTL 7 E 50S ribosomal protein L6P 2238
34 3G71 6 E 50S ribosomal protein L6P 2238
35 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
36 1VQ4 8 E 50S ribosomal protein L6P 2238
37 1YJN 7 E 50S ribosomal protein L6P 2238
38 3CMA 5 E 50S ribosomal protein L6P 2238
39 3CCS 5 E 50S ribosomal protein L6P 2238
40 3CCQ 5 E 50S ribosomal protein L6P 2238
41 3I56 5 E 50S ribosomal protein L6P 2238
42 3CCR 5 E 50S ribosomal protein L6P 2238
43 2OTJ 7 E 50S ribosomal protein L6P 2238
44 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
45 3OW2 7 E 50S ribosomal protein L6P 2238
46 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
47 1QVG 8 E 50S ribosomal protein L6P 2238
48 3CME 5 E 50S ribosomal protein L6P 2238
49 2QEX 7 E 50S ribosomal protein L6P 2238
50 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
51 1N8R 7 G 50S ribosomal protein L6P 2238
52 1Q81 8 G 50S ribosomal protein L6P 2238
53 1Q82 8 G 50S ribosomal protein L6P 2238
54 1QVF 8 E 50S ribosomal protein L6P 2238
55 1NJI 7 G 50S ribosomal protein L6P 2238
56 1K73 7 G RIBOSOMAL PROTEIN L6 2238
57 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
58 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
59 3I55 6 E 50S ribosomal protein L6P 2238
60 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
61 1Q86 8 G 50S ribosomal protein L6P 2238
62 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
63 3G4S 6 E 50S ribosomal protein L6P 2238
64 3CCJ 5 E 50S ribosomal protein L6P 2238
65 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
66 2QA4 7 E 50S ribosomal protein L6P 2238
67 1Q7Y 8 G 50S ribosomal protein L6P 2238
68 4ADX 15 E RPL6 145262