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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 454 Members. Sequence cutoff: 95% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 7 E 50S ribosomal protein L6P 272569  
2 1VQO 8 E 50S ribosomal protein L6P 2238  
3 1VQ8 8 E 50S ribosomal protein L6P 2238  
4 1S72 7 E 50S ribosomal protein L6P 2238  
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238  
6 1YHQ 7 E 50S ribosomal protein L6P 2238  
7 1VQP 8 E 50S ribosomal protein L6P 2238  
8 1VQM 8 E 50S ribosomal protein L6P 2238  
9 3CC2 5 E 50S ribosomal protein L6P 2238  
10 1VQL 8 E 50S ribosomal protein L6P 2238  
11 1VQK 8 E 50S ribosomal protein L6P 2238  
12 1VQN 9 E 50S ribosomal protein L6P 2238  
13 1YIJ 7 E 50S ribosomal protein L6P 2238  
14 1YI2 7 E 50S ribosomal protein L6P 2238  
15 1VQ9 8 E 50S ribosomal protein L6P 2238  
16 1VQ7 8 E 50S ribosomal protein L6P 2238  
17 3CCM 5 E 50S ribosomal protein L6P 272569  
18 1VQ5 8 E 50S ribosomal protein L6P 2238  
19 3CCJ 5 E 50S ribosomal protein L6P 272569  
20 3CC7 5 E 50S ribosomal protein L6P 2238  
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
22 3CCE 5 E 50S ribosomal protein L6P 272569  
23 3G6E 6 E 50S ribosomal protein L6P 2238  
24 3CPW 7 E 50S ribosomal protein L6P 272569  
25 3CCU 5 E 50S ribosomal protein L6P 272569  
26 1VQ6 9 E 50S ribosomal protein L6P 2238  
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238  
28 3CCL 5 E 50S ribosomal protein L6P 272569  
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
30 1YJ9 7 E 50S ribosomal protein L6P 2238  
31 3CD6 5 E 50S ribosomal protein L6P 272569  
32 3CCV 5 E 50S ribosomal protein L6P 272569  
33 3CC4 5 E 50S ribosomal protein L6P 272569  
34 2OTL 7 E 50S ribosomal protein L6P 2238  
35 3G71 6 E 50S ribosomal protein L6P 2238  
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238  
37 1VQ4 8 E 50S ribosomal protein L6P 2238  
38 1YJN 7 E 50S ribosomal protein L6P 2238  
39 3CMA 5 E 50S ribosomal protein L6P 2238  
40 3CCS 5 E 50S ribosomal protein L6P 272569  
41 3CCQ 5 E 50S ribosomal protein L6P 272569  
42 3I56 5 E 50S ribosomal protein L6P 2238  
43 3CCR 5 E 50S ribosomal protein L6P 272569  
44 2OTJ 7 E 50S ribosomal protein L6P 2238  
45 1KQS 9 E RIBOSOMAL PROTEIN L6 2238  
46 3OW2 7 E 50S ribosomal protein L6P 2238  
47 3CXC 8 E RIBOSOMAL PROTEIN L6 2238  
48 1QVG 8 E 50S ribosomal protein L6P 2238  
49 3CME 5 E 50S ribosomal protein L6P 2238  
50 2QEX 7 E 50S ribosomal protein L6P 2238  
51 1KC8 7 G RIBOSOMAL PROTEIN L6 2238  
52 1N8R 7 G 50S ribosomal protein L6P 2238  
53 1Q81 8 G 50S ribosomal protein L6P 2238  
54 1Q82 8 G 50S ribosomal protein L6P 2238  
55 1QVF 8 E 50S ribosomal protein L6P 2238  
56 1NJI 7 G 50S ribosomal protein L6P 2238  
57 1K73 7 G RIBOSOMAL PROTEIN L6 2238  
58 1K9M 7 G RIBOSOMAL PROTEIN L6 2238  
59 1KD1 7 G RIBOSOMAL PROTEIN L6 2238  
60 3I55 6 E 50S ribosomal protein L6P 2238  
61 1K8A 7 G RIBOSOMAL PROTEIN L6 2238  
62 1Q86 8 G 50S ribosomal protein L6P 2238  
63 1M1K 7 G RIBOSOMAL PROTEIN L6 2238  
64 3G4S 6 E 50S ribosomal protein L6P 2238  
65 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238  
66 2QA4 7 E 50S ribosomal protein L6P 2238  
67 1Q7Y 8 G 50S ribosomal protein L6P 2238  
68 4ADX 15 E RPL6 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 623
95% 36 68 459
90% 36 68 483
70% 36 68 518
50% 36 117 235
40% 36 117 265
30% 38 317 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47847
95% 1 1 33588
90% 1 1 32114
70% 36 68 511
50% 36 115 239
40% 36 115 274
30% 36 115 295
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 430
70% 36 74 458
50% 36 74 502
40% 36 74 538
30% 37 309 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 404
90% 36 74 428
70% 36 74 456
50% 36 76 483
40% 36 76 517
30% 36 78 509
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 461
90% 36 68 486
70% 36 68 521
50% 36 70 545
40% 36 70 578
30% 36 70 579
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1650
95% 36 68 457
90% 36 68 481
70% 36 68 516
50% 36 68 574
40% 36 70 577
30% 36 71 560
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 523
50% 36 70 548
40% 36 70 582
30% 36 71 563
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 455
90% 36 68 479
70% 36 68 514
50% 36 68 571
40% 36 68 609
30% 36 118 281
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 409
90% 36 74 433
70% 36 74 462
50% 36 76 485
40% 36 78 500
30% 37 272 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 408
90% 36 74 432
70% 36 74 461
50% 36 124 220
40% 36 124 247
30% 36 124 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 308
95% 34 70 441
90% 34 70 462
70% 34 70 496
50% 34 70 549
40% 34 70 583
30% 34 70 581
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 410
90% 36 74 434
70% 36 74 463
50% 36 74 506
40% 36 74 541
30% 36 74 540
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 480
70% 36 68 515
50% 36 68 572
40% 36 70 576
30% 36 71 559
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 525
50% 36 68 579
40% 36 68 616
30% 36 68 609
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50791
95% 3 5 11231
90% 3 5 11051
70% 3 5 10446
50% 3 5 9396
40% 3 5 8566
30% 3 5 7518
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56374
95% 1 1 39340
90% 1 1 37623
70% 3 21 2237
50% 7 30 1518
40% 7 73 413
30% 26 96 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 467
90% 36 68 492
70% 36 68 527
50% 36 69 562
40% 36 69 601
30% 36 69 598
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57644
95% 36 68 468
90% 36 68 493
70% 36 68 528
50% 36 117 237
40% 36 117 267
30% 36 117 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 464
90% 36 68 489
70% 36 68 524
50% 36 68 578
40% 36 68 615
30% 36 116 291
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 478
70% 36 68 513
50% 36 68 569
40% 36 116 269
30% 38 312 53
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1633
95% 35 67 471
90% 35 67 496
70% 35 67 534
50% 35 114 243
40% 35 116 268
30% 35 116 290
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42171
95% 36 74 398
90% 36 74 423
70% 36 74 452
50% 36 74 496
40% 36 121 252
30% 36 121 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7702
95% 36 74 402
90% 36 74 426
70% 36 74 455
50% 36 74 499
40% 36 76 516
30% 36 77 515
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 405
90% 36 74 429
70% 36 74 457
50% 36 74 500
40% 36 121 253
30% 36 121 271
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1660
95% 3 21 2182
90% 36 68 485
70% 36 68 520
50% 51 95 300
40% 58 105 287
30% 58 107 304
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49816
95% 1 1 34691
90% 1 7 7982
70% 3 27 1652
50% 36 74 501
40% 36 78 497
30% 36 78 511
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 407
90% 36 74 431
70% 36 74 459
50% 36 74 503
40% 37 77 508
30% 37 78 512
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.