Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 714
95 % 36 68 509
90 % 36 68 538
70 % 36 68 588
50 % 36 137 223
40 % 36 137 250
30 % 42 407 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52834
95 % 1 1 36927
90 % 1 1 35202
70 % 36 68 580
50 % 36 132 237
40 % 36 132 263
30 % 36 132 278
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 301
95 % 36 74 443
90 % 36 74 466
70 % 36 74 509
50 % 36 74 589
40 % 36 74 633
30 % 41 396 45
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 299
95 % 36 74 440
90 % 36 74 464
70 % 36 74 506
50 % 36 76 564
40 % 36 76 608
30 % 36 78 581
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 346
95 % 36 68 511
90 % 36 68 541
70 % 36 68 591
50 % 36 70 648
40 % 36 70 688
30 % 36 70 690
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1848
95 % 36 68 507
90 % 36 68 536
70 % 36 68 586
50 % 36 68 684
40 % 36 70 685
30 % 36 71 671
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 347
95 % 36 68 512
90 % 36 68 542
70 % 36 68 592
50 % 36 70 649
40 % 36 70 690
30 % 36 71 674
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 356
95 % 36 68 505
90 % 36 68 534
70 % 36 68 584
50 % 36 68 681
40 % 36 68 714
30 % 36 136 267
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 448
90 % 36 74 471
70 % 36 74 517
50 % 36 76 568
40 % 36 78 583
30 % 41 342 53
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 304
95 % 36 74 446
90 % 36 74 469
70 % 36 74 514
50 % 36 141 219
40 % 36 141 248
30 % 36 141 260
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 331
95 % 34 70 487
90 % 34 70 514
70 % 34 70 563
50 % 34 70 651
40 % 34 70 691
30 % 34 70 691
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 449
90 % 36 74 472
70 % 36 74 518
50 % 36 74 596
40 % 36 74 640
30 % 36 74 635
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 344
95 % 36 68 506
90 % 36 68 535
70 % 36 68 585
50 % 36 68 682
40 % 36 70 684
30 % 36 71 670
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 349
95 % 36 68 514
90 % 36 68 544
70 % 36 68 594
50 % 36 68 688
40 % 36 68 718
30 % 36 68 719
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55929
95 % 3 5 12400
90 % 3 5 12166
70 % 3 5 11473
50 % 3 5 10284
40 % 3 5 9380
30 % 3 5 8184
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61819
95 % 1 1 42933
90 % 1 1 40943
70 % 3 21 2498
50 % 7 30 1686
40 % 7 90 384
30 % 26 113 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 516
90 % 36 68 546
70 % 36 68 596
50 % 36 69 670
40 % 36 69 705
30 % 36 69 706
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 36 68 517
90 % 36 68 547
70 % 36 68 597
50 % 36 134 230
40 % 36 134 258
30 % 36 134 274
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 348
95 % 36 68 513
90 % 36 68 543
70 % 36 68 593
50 % 36 68 687
40 % 36 68 717
30 % 36 132 281
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 343
95 % 36 68 504
90 % 36 68 533
70 % 36 68 583
50 % 36 68 680
40 % 36 136 253
30 % 42 402 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1825
95 % 36 68 501
90 % 36 68 530
70 % 36 68 579
50 % 36 132 236
40 % 36 134 256
30 % 36 134 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46681
95 % 36 74 432
90 % 36 74 457
70 % 36 74 502
50 % 36 74 580
40 % 36 141 244
30 % 36 141 257
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8647
95 % 36 74 436
90 % 36 74 461
70 % 36 74 505
50 % 36 74 583
40 % 36 76 605
30 % 36 77 592
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 300
95 % 36 74 442
90 % 36 74 465
70 % 36 74 507
50 % 36 74 587
40 % 37 141 247
30 % 37 141 259
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1861
95 % 3 21 2439
90 % 36 68 540
70 % 36 68 590
50 % 51 95 340
40 % 58 107 308
30 % 58 109 317
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54920
95 % 1 1 38086
90 % 1 7 8809
70 % 3 27 1833
50 % 36 74 588
40 % 36 79 570
30 % 36 79 573
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 302
95 % 36 74 444
90 % 36 74 467
70 % 36 74 512
50 % 36 74 592
40 % 37 77 595
30 % 37 78 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CCJ 5 E 50S ribosomal protein L6P 2238
20 3CC7 5 E 50S ribosomal protein L6P 2238
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
22 3CCE 5 E 50S ribosomal protein L6P 2238
23 3G6E 6 E 50S ribosomal protein L6P 2238
24 3CPW 7 E 50S ribosomal protein L6P 2238
25 3CCU 5 E 50S ribosomal protein L6P 2238
26 1VQ6 9 E 50S ribosomal protein L6P 2238
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238
28 3CCL 5 E 50S ribosomal protein L6P 2238
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
30 1YJ9 7 E 50S ribosomal protein L6P 2238
31 3CD6 5 E 50S ribosomal protein L6P 2238
32 3CCV 5 E 50S ribosomal protein L6P 2238
33 3CC4 5 E 50S ribosomal protein L6P 2238
34 2OTL 7 E 50S ribosomal protein L6P 2238
35 3G71 6 E 50S ribosomal protein L6P 2238
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
37 1VQ4 8 E 50S ribosomal protein L6P 2238
38 1YJN 7 E 50S ribosomal protein L6P 2238
39 3CMA 5 E 50S ribosomal protein L6P 2238
40 3CCS 5 E 50S ribosomal protein L6P 2238
41 3CCQ 5 E 50S ribosomal protein L6P 2238
42 3I56 5 E 50S ribosomal protein L6P 2238
43 3CCR 5 E 50S ribosomal protein L6P 2238
44 2OTJ 7 E 50S ribosomal protein L6P 2238
45 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
47 3OW2 7 E 50S ribosomal protein L6P 2238
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
50 1QVG 8 E 50S ribosomal protein L6P 2238
51 3CME 5 E 50S ribosomal protein L6P 2238
52 2QEX 7 E 50S ribosomal protein L6P 2238
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
56 1N8R 7 G 50S ribosomal protein L6P 2238
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
58 1Q81 8 G 50S ribosomal protein L6P 2238
59 1Q82 8 G 50S ribosomal protein L6P 2238
60 1QVF 8 E 50S ribosomal protein L6P 2238
61 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
63 1NJI 7 G 50S ribosomal protein L6P 2238
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
70 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
73 3I55 6 E 50S ribosomal protein L6P 2238
74 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
75 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
76 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
77 1Q86 8 G 50S ribosomal protein L6P 2238
78 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
79 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
80 3G4S 6 E 50S ribosomal protein L6P 2238
81 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
82 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
83 2QA4 7 E 50S ribosomal protein L6P 2238
84 1Q7Y 8 G 50S ribosomal protein L6P 2238
85 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
86 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
87 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
88 5FL8 8 H Rpl9ap 4932
89 5APN 11 H 60S ribosomal protein L9-A 4932
90 5APO 11 H 60S ribosomal protein L9-A 4932
91 3JBN 74 AH 60S ribosomal protein uL6 5833
92 3JBO 74 AH 60S ribosomal protein uL6 5833
93 3JBP 74 AH 60S ribosomal protein uL6 5833
94 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
95 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
96 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
97 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
98 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
99 3JAG 8 H uL6 9986
100 3JAH 8 H uL6 9986
101 3JAI 8 H uL6 9986
102 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
103 5AJ0 10 AH 60S ribosomal protein L9 9606
104 3J92 8 H uL6 9986
105 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
106 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
107 4V3P 39 LF 60S ribosomal protein L9 4565
108 3J7O 11 H Ribosomal protein uL6 9823
109 3J7P 11 H Ribosomal protein uL6 9823
110 3J7Q 11 H Ribosomal protein uL6 9823
111 3J7R 11 H Ribosomal protein uL6 9823
112 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
113 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
114 3J79 8 H 60S ribosomal protein uL6 5833
115 3J77 9 L9 60S ribosomal protein L9 4932
116 3J78 9 L9 60S ribosomal protein L9 4932
117 3J6X 12 L9 60S ribosomal protein L9 4932
118 3J6Y 12 L9 60S ribosomal protein L9 4932
119 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
120 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
121 4V7F 9 F 60S ribosomal protein L9 4932
122 4V7E 43 CH 60S ribosomal protein L6 4565
123 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
124 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
125 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
126 4V6W 80 CH 60S ribosomal protein L9 7227
127 4V6X 80 CH 60S ribosomal protein L9 9606
128 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
129 4V6U 54 BF 50S ribosomal protein L6P 2261
130 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
131 4ADX 15 E RPL6 145262
132 3J16 6 F 60S ribosomal protein L6 4932
133 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
134 4V7H 32 BH 60S ribosomal protein L9(A) 5541
135 4V5Z 57 Be 60S Ribosomal protein L9 9612
136 4V4B 27 BH 60S ribosomal protein L9-A 4932