Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 829
95 % 35 68 665
90 % 35 68 692
70 % 35 68 744
50 % 35 176 200
40 % 35 176 221
30 % 43 513 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59262
95 % 1 1 41301
90 % 1 1 39301
70 % 35 68 736
50 % 35 172 209
40 % 35 172 233
30 % 35 172 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 418
95 % 35 74 588
90 % 35 74 619
70 % 35 74 651
50 % 35 74 696
40 % 35 74 735
30 % 42 495 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 416
95 % 35 74 586
90 % 35 74 617
70 % 35 74 648
50 % 35 76 666
40 % 35 76 709
30 % 35 79 678
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 475
95 % 35 68 666
90 % 35 68 694
70 % 35 68 746
50 % 35 70 763
40 % 35 70 799
30 % 35 70 788
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2182
95 % 35 68 664
90 % 35 68 690
70 % 35 68 742
50 % 35 68 793
40 % 35 72 764
30 % 35 72 755
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 476
95 % 35 68 668
90 % 35 68 696
70 % 35 68 749
50 % 35 70 765
40 % 35 70 801
30 % 35 71 772
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 489
95 % 35 68 662
90 % 35 68 688
70 % 35 68 739
50 % 35 68 790
40 % 35 68 825
30 % 35 175 232
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 423
95 % 35 74 592
90 % 35 74 623
70 % 35 74 657
50 % 35 76 670
40 % 35 78 692
30 % 42 402 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 422
95 % 35 74 591
90 % 35 74 622
70 % 35 74 656
50 % 35 180 199
40 % 35 180 217
30 % 35 180 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 454
95 % 33 70 638
90 % 33 70 663
70 % 33 70 717
50 % 33 70 766
40 % 33 70 804
30 % 33 70 792
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 424
95 % 35 74 593
90 % 35 74 624
70 % 35 74 658
50 % 35 74 701
40 % 35 74 738
30 % 35 74 730
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 473
95 % 35 68 663
90 % 35 68 689
70 % 35 68 740
50 % 35 68 791
40 % 35 70 796
30 % 35 71 769
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 478
95 % 35 68 670
90 % 35 68 698
70 % 35 68 751
50 % 35 68 796
40 % 35 68 829
30 % 35 68 814
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62617
95 % 3 5 14045
90 % 3 5 13782
70 % 3 5 12926
50 % 3 5 11528
40 % 3 5 10459
30 % 3 5 9060
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68921
95 % 1 1 47746
90 % 1 1 45380
70 % 3 21 2865
50 % 7 30 1917
40 % 7 129 302
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 480
95 % 35 68 673
90 % 35 68 701
70 % 35 68 755
50 % 35 69 778
40 % 35 69 815
30 % 35 69 804
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70331
95 % 35 68 674
90 % 35 68 702
70 % 35 68 756
50 % 35 173 205
40 % 35 173 228
30 % 35 173 235
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 477
95 % 35 68 669
90 % 35 68 697
70 % 35 68 750
50 % 35 68 795
40 % 35 68 828
30 % 35 169 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 472
95 % 35 68 661
90 % 35 68 687
70 % 35 68 738
50 % 35 68 789
40 % 35 174 226
30 % 43 504 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2166
95 % 35 68 658
90 % 35 68 684
70 % 35 68 734
50 % 35 171 208
40 % 35 173 227
30 % 35 173 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52492
95 % 35 74 577
90 % 35 74 609
70 % 35 74 643
50 % 35 74 689
40 % 35 180 215
30 % 35 180 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9908
95 % 35 74 582
90 % 35 74 615
70 % 35 74 646
50 % 35 74 691
40 % 35 76 707
30 % 36 78 686
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 417
95 % 35 74 587
90 % 35 74 618
70 % 35 74 649
50 % 35 74 694
40 % 36 180 216
30 % 36 180 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2194
95 % 3 21 2836
90 % 35 68 693
70 % 35 68 745
50 % 50 105 322
40 % 57 122 280
30 % 57 124 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61521
95 % 1 1 42557
90 % 1 7 10001
70 % 3 27 2134
50 % 35 74 695
40 % 35 79 679
30 % 35 79 680
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 419
95 % 35 74 589
90 % 35 74 620
70 % 35 74 654
50 % 35 74 700
40 % 36 77 702
30 % 36 78 689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CC7 5 E 50S ribosomal protein L6P 2238
20 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
21 3CCE 5 E 50S ribosomal protein L6P 2238
22 3G6E 6 E 50S ribosomal protein L6P 2238
23 3CPW 7 E 50S ribosomal protein L6P 2238
24 3CCU 5 E 50S ribosomal protein L6P 2238
25 1VQ6 9 E 50S ribosomal protein L6P 2238
26 1M90 8 G RIBOSOMAL PROTEIN L6 2238
27 3CCL 5 E 50S ribosomal protein L6P 2238
28 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
29 1YJ9 7 E 50S ribosomal protein L6P 2238
30 3CD6 5 E 50S ribosomal protein L6P 2238
31 3CCV 5 E 50S ribosomal protein L6P 2238
32 3CC4 5 E 50S ribosomal protein L6P 2238
33 2OTL 7 E 50S ribosomal protein L6P 2238
34 3G71 6 E 50S ribosomal protein L6P 2238
35 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
36 1VQ4 8 E 50S ribosomal protein L6P 2238
37 1YJN 7 E 50S ribosomal protein L6P 2238
38 3CMA 5 E 50S ribosomal protein L6P 2238
39 3CCS 5 E 50S ribosomal protein L6P 2238
40 3CCQ 5 E 50S ribosomal protein L6P 2238
41 3I56 5 E 50S ribosomal protein L6P 2238
42 3CCR 5 E 50S ribosomal protein L6P 2238
43 2OTJ 7 E 50S ribosomal protein L6P 2238
44 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
45 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
46 3OW2 7 E 50S ribosomal protein L6P 2238
47 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
48 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
49 1QVG 8 E 50S ribosomal protein L6P 2238
50 3CME 5 E 50S ribosomal protein L6P 2238
51 2QEX 7 E 50S ribosomal protein L6P 2238
52 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
53 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
54 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
55 1N8R 7 G 50S ribosomal protein L6P 2238
56 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
57 1Q81 8 G 50S ribosomal protein L6P 2238
58 1Q82 8 G 50S ribosomal protein L6P 2238
59 1QVF 8 E 50S ribosomal protein L6P 2238
60 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
61 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
62 1NJI 7 G 50S ribosomal protein L6P 2238
63 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
64 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
65 1K73 7 G RIBOSOMAL PROTEIN L6 2238
66 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
67 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
70 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
71 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
72 5DAT 46 L9, l9 60S ribosomal protein L9-A 4932
73 3I55 6 E 50S ribosomal protein L6P 2238
74 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
75 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
76 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
77 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
78 1Q86 8 G 50S ribosomal protein L6P 2238
79 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
80 5LYB 46 L9, l9 60S ribosomal protein L9-A 4932
81 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
82 3G4S 6 E 50S ribosomal protein L6P 2238
83 3CCJ 5 E 50S ribosomal protein L6P 2238
84 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
85 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
86 2QA4 7 E 50S ribosomal protein L6P 2238
87 5TGA 46 L9, l9 60S ribosomal protein L9-A 4932
88 1Q7Y 8 G 50S ribosomal protein L6P 2238
89 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
90 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
91 5DGV 46 L9, l9 60S ribosomal protein L9-A 4932
92 5DGE 46 L9, l9 60S ribosomal protein L9-A 4932
93 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
94 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
95 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
96 5DGF 46 L9, l9 60S ribosomal protein L9-A 4932
97 5TGM 46 L9, l9 60S ribosomal protein L9-A 4932
98 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
99 5UMD 8 H 60S ribosomal protein L6, putative 5833
100 5MC6 44 AD 60S ribosomal protein L9-A 4932
101 5H4P 11 H 60S ribosomal protein L9-A 4932
102 5M1J 53 H5 60S ribosomal protein L9-A 4932
103 5LZS 8 H Uncharacterized protein 9986
104 5LZT 8 H uL6 9986
105 5LZU 8 H uL6 9986
106 5LZV 8 H uL6 9986
107 5LZW 8 H uL6 9986
108 5LZX 8 H uL6 9986
109 5LZY 8 H uL6 9986
110 5LZZ 8 H uL6 9986
111 5T62 12 K 60S ribosomal protein L9-A 4932
112 5T6R 11 K 60S ribosomal protein L9-A 4932
113 5T2A 49 w uL6 5661
114 5T2C 32 o 60S ribosomal protein L9 9606
115 5LKS 11 LH 60S ribosomal protein L9 9606
116 5JUO 13 M uL6 (yeast L9) 4932
117 5JUP 13 M uL6 (yeast L9) 4932
118 5JUS 13 M uL6 (yeast L9) 4932
119 5JUT 13 M uL6 (yeast L9) 4932
120 5JUU 13 M uL6 (yeast L9) 4932
121 5JCS 15 H 60S ribosomal protein L9-A 4932
122 5IT7 11 HH KLLA0F04499p 28985
123 3JCT 8 H 60S ribosomal protein L9-A 4932
124 3JCS 13 E ribosomal protein L6 5661
125 5GAK 29 L 60S ribosomal protein L9-A 4932
126 5FL8 8 H Rpl9ap 4932
127 5APN 11 H 60S ribosomal protein L9-A 4932
128 5APO 11 H 60S ribosomal protein L9-A 4932
129 3JBN 74 AH 60S ribosomal protein uL6 5833
130 3JBO 74 AH 60S ribosomal protein uL6 5833
131 3JBP 74 AH 60S ribosomal protein uL6 5833
132 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
133 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
134 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
135 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
136 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
137 3JAG 8 H uL6 9986
138 3JAH 8 H uL6 9986
139 3JAI 8 H uL6 9986
140 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
141 5AJ0 10 AH 60S ribosomal protein L9 9606
142 3J92 8 H uL6 9986
143 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
144 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
145 4V3P 39 LF 60S ribosomal protein L9 4565
146 3J7O 11 H Ribosomal protein uL6 9823
147 3J7P 11 H Ribosomal protein uL6 9823
148 3J7Q 11 H Ribosomal protein uL6 9823
149 3J7R 11 H Ribosomal protein uL6 9823
150 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
151 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
152 3J79 8 H 60S ribosomal protein uL6 5833
153 3J77 9 L9 60S ribosomal protein L9 4932
154 3J78 9 L9 60S ribosomal protein L9 4932
155 3J6X 12 L9 60S ribosomal protein L9 4932
156 3J6Y 12 L9 60S ribosomal protein L9 4932
157 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
158 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
159 4V7F 9 F 60S ribosomal protein L9 4932
160 4V7E 43 CH 60S ribosomal protein L6 4565
161 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
162 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
163 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
164 4V6W 80 CH 60S ribosomal protein L9 7227
165 4V6X 80 CH 60S ribosomal protein L9 9606
166 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
167 4V6U 54 BF 50S ribosomal protein L6P 2261
168 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
169 4ADX 15 E RPL6 145262
170 3J16 6 F 60S ribosomal protein L6 4932
171 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
172 4V7H 32 BH 60S ribosomal protein L9(A) 5541
173 4V5Z 57 Be 60S Ribosomal protein L9 9612
174 4V4B 27 BH 60S ribosomal protein L9-A 4932