Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CCJ 5 E 50S ribosomal protein L6P 2238
20 3CC7 5 E 50S ribosomal protein L6P 2238
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
22 3CCE 5 E 50S ribosomal protein L6P 2238
23 3G6E 6 E 50S ribosomal protein L6P 2238
24 3CPW 7 E 50S ribosomal protein L6P 2238
25 3CCU 5 E 50S ribosomal protein L6P 2238
26 1VQ6 9 E 50S ribosomal protein L6P 2238
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238
28 3CCL 5 E 50S ribosomal protein L6P 2238
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
30 1YJ9 7 E 50S ribosomal protein L6P 2238
31 3CD6 5 E 50S ribosomal protein L6P 2238
32 3CCV 5 E 50S ribosomal protein L6P 2238
33 3CC4 5 E 50S ribosomal protein L6P 2238
34 2OTL 7 E 50S ribosomal protein L6P 2238
35 3G71 6 E 50S ribosomal protein L6P 2238
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
37 1VQ4 8 E 50S ribosomal protein L6P 2238
38 1YJN 7 E 50S ribosomal protein L6P 2238
39 3CMA 5 E 50S ribosomal protein L6P 2238
40 3CCS 5 E 50S ribosomal protein L6P 2238
41 3CCQ 5 E 50S ribosomal protein L6P 2238
42 3I56 5 E 50S ribosomal protein L6P 2238
43 3CCR 5 E 50S ribosomal protein L6P 2238
44 2OTJ 7 E 50S ribosomal protein L6P 2238
45 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
47 3OW2 7 E 50S ribosomal protein L6P 2238
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
50 1QVG 8 E 50S ribosomal protein L6P 2238
51 3CME 5 E 50S ribosomal protein L6P 2238
52 2QEX 7 E 50S ribosomal protein L6P 2238
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
56 1N8R 7 G 50S ribosomal protein L6P 2238
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
58 1Q81 8 G 50S ribosomal protein L6P 2238
59 1Q82 8 G 50S ribosomal protein L6P 2238
60 1QVF 8 E 50S ribosomal protein L6P 2238
61 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
63 1NJI 7 G 50S ribosomal protein L6P 2238
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
70 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
73 5DAT 46 L9, l9 60S ribosomal protein L9-A 4932
74 3I55 6 E 50S ribosomal protein L6P 2238
75 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
76 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
77 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
78 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
79 1Q86 8 G 50S ribosomal protein L6P 2238
80 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
81 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
82 3G4S 6 E 50S ribosomal protein L6P 2238
83 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
84 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
85 2QA4 7 E 50S ribosomal protein L6P 2238
86 1Q7Y 8 G 50S ribosomal protein L6P 2238
87 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
88 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
89 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
90 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
91 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
92 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
93 5IT7 11 HH KLLA0F04499p 28985
94 3JCT 8 H 60S ribosomal protein L9-A 4932
95 3JCS 13 E ribosomal protein L6 5661
96 5GAK 29 L 60S ribosomal protein L9-A 4932
97 5FL8 8 H Rpl9ap 4932
98 5APN 11 H 60S ribosomal protein L9-A 4932
99 5APO 11 H 60S ribosomal protein L9-A 4932
100 3JBN 74 AH 60S ribosomal protein uL6 5833
101 3JBO 74 AH 60S ribosomal protein uL6 5833
102 3JBP 74 AH 60S ribosomal protein uL6 5833
103 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
104 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
105 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
106 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
107 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
108 3JAG 8 H uL6 9986
109 3JAH 8 H uL6 9986
110 3JAI 8 H uL6 9986
111 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
112 5AJ0 10 AH 60S ribosomal protein L9 9606
113 3J92 8 H uL6 9986
114 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
115 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
116 4V3P 39 LF 60S ribosomal protein L9 4565
117 3J7O 11 H Ribosomal protein uL6 9823
118 3J7P 11 H Ribosomal protein uL6 9823
119 3J7Q 11 H Ribosomal protein uL6 9823
120 3J7R 11 H Ribosomal protein uL6 9823
121 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
122 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
123 3J79 8 H 60S ribosomal protein uL6 5833
124 3J77 9 L9 60S ribosomal protein L9 4932
125 3J78 9 L9 60S ribosomal protein L9 4932
126 3J6X 12 L9 60S ribosomal protein L9 4932
127 3J6Y 12 L9 60S ribosomal protein L9 4932
128 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
129 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
130 4V7F 9 F 60S ribosomal protein L9 4932
131 4V7E 43 CH 60S ribosomal protein L6 4565
132 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
133 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
134 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
135 4V6W 80 CH 60S ribosomal protein L9 7227
136 4V6X 80 CH 60S ribosomal protein L9 9606
137 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
138 4V6U 54 BF 50S ribosomal protein L6P 2261
139 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
140 4ADX 15 E RPL6 145262
141 3J16 6 F 60S ribosomal protein L6 4932
142 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
143 4V7H 32 BH 60S ribosomal protein L9(A) 5541
144 4V5Z 57 Be 60S Ribosomal protein L9 9612
145 4V4B 27 BH 60S ribosomal protein L9-A 4932