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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 270 Members. Sequence cutoff: 40% Cluster size: 117 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 7 E 50S ribosomal protein L6P 272569  
2 1VQO 8 E 50S ribosomal protein L6P 2238  
3 1VQ8 8 E 50S ribosomal protein L6P 2238  
4 1S72 7 E 50S ribosomal protein L6P 2238  
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238  
6 1YHQ 7 E 50S ribosomal protein L6P 2238  
7 1VQP 8 E 50S ribosomal protein L6P 2238  
8 1VQM 8 E 50S ribosomal protein L6P 2238  
9 3CC2 5 E 50S ribosomal protein L6P 2238  
10 1VQL 8 E 50S ribosomal protein L6P 2238  
11 1VQK 8 E 50S ribosomal protein L6P 2238  
12 1VQN 9 E 50S ribosomal protein L6P 2238  
13 1YIJ 7 E 50S ribosomal protein L6P 2238  
14 1YI2 7 E 50S ribosomal protein L6P 2238  
15 1VQ9 8 E 50S ribosomal protein L6P 2238  
16 1VQ7 8 E 50S ribosomal protein L6P 2238  
17 3CCM 5 E 50S ribosomal protein L6P 272569  
18 1VQ5 8 E 50S ribosomal protein L6P 2238  
19 3CCJ 5 E 50S ribosomal protein L6P 272569  
20 3CC7 5 E 50S ribosomal protein L6P 2238  
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
22 3CCE 5 E 50S ribosomal protein L6P 272569  
23 3G6E 6 E 50S ribosomal protein L6P 2238  
24 3CPW 7 E 50S ribosomal protein L6P 272569  
25 3CCU 5 E 50S ribosomal protein L6P 272569  
26 1VQ6 9 E 50S ribosomal protein L6P 2238  
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238  
28 3CCL 5 E 50S ribosomal protein L6P 272569  
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
30 1YJ9 7 E 50S ribosomal protein L6P 2238  
31 3CD6 5 E 50S ribosomal protein L6P 272569  
32 3CCV 5 E 50S ribosomal protein L6P 272569  
33 3CC4 5 E 50S ribosomal protein L6P 272569  
34 2OTL 7 E 50S ribosomal protein L6P 2238  
35 3G71 6 E 50S ribosomal protein L6P 2238  
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238  
37 1VQ4 8 E 50S ribosomal protein L6P 2238  
38 1YJN 7 E 50S ribosomal protein L6P 2238  
39 3CMA 5 E 50S ribosomal protein L6P 2238  
40 3CCS 5 E 50S ribosomal protein L6P 272569  
41 3CCQ 5 E 50S ribosomal protein L6P 272569  
42 3I56 5 E 50S ribosomal protein L6P 2238  
43 3CCR 5 E 50S ribosomal protein L6P 272569  
44 2OTJ 7 E 50S ribosomal protein L6P 2238  
45 4V88 46 BH, DH 60S ribosomal protein L9-A 559292  
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238  
47 3OW2 7 E 50S ribosomal protein L6P 2238  
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 559292  
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238  
50 1QVG 8 E 50S ribosomal protein L6P 2238  
51 3CME 5 E 50S ribosomal protein L6P 2238  
52 2QEX 7 E 50S ribosomal protein L6P 2238  
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 559292  
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238  
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 559292  
56 1N8R 7 G 50S ribosomal protein L6P 2238  
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 559292  
58 1Q81 8 G 50S ribosomal protein L6P 2238  
59 1Q82 8 G 50S ribosomal protein L6P 2238  
60 1QVF 8 E 50S ribosomal protein L6P 2238  
61 4U52 46 L9, l9 60S ribosomal protein L9-A 559292  
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 559292  
63 1NJI 7 G 50S ribosomal protein L6P 2238  
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 559292  
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 559292  
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238  
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 559292  
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 559292  
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 559292  
70 4U55 46 L9, l9 60S ribosomal protein L9-A 559292  
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238  
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238  
73 3I55 6 E 50S ribosomal protein L6P 2238  
74 4U51 46 L9, l9 60S ribosomal protein L9-A 559292  
75 1K8A 7 G RIBOSOMAL PROTEIN L6 2238  
76 4U53 46 L9, l9 60S ribosomal protein L9-A 559292  
77 1Q86 8 G 50S ribosomal protein L6P 2238  
78 4U50 46 L9, l9 60S ribosomal protein L9-A 559292  
79 1M1K 7 G RIBOSOMAL PROTEIN L6 2238  
80 3G4S 6 E 50S ribosomal protein L6P 2238  
81 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238  
82 4U56 46 L9, l9 60S ribosomal protein L9-A 559292  
83 2QA4 7 E 50S ribosomal protein L6P 2238  
84 1Q7Y 8 G 50S ribosomal protein L6P 2238  
85 4U4O 46 L9, l9 60S ribosomal protein L9-A 559292  
86 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911  
87 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932  
88 3J92 8 H uL6 9986  
89 3J7O 11 H Ribosomal protein uL6 9823  
90 3J7P 11 H Ribosomal protein uL6 9823  
91 3J7Q 11 H Ribosomal protein uL6 9823  
92 3J7R 11 H Ribosomal protein uL6 9823  
93 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986  
94 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986  
95 3J79 8 H 60S ribosomal protein uL6 36329  
96 3J77 9 L9 60S ribosomal protein L9 4932  
97 3J78 9 L9 60S ribosomal protein L9 4932  
98 3J6X 12 L9 60S ribosomal protein L9 580240  
99 3J6Y 12 L9 60S ribosomal protein L9 580240  
100 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986  
101 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985  
102 4V7F 9 F 60S ribosomal protein L9 4932  
103 4V7E 43 CH 60S ribosomal protein L6 4565  
104 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932  
105 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932  
106 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190  
107 4V6W 80 CH 60S ribosomal protein L9 7227  
108 4V6X 80 CH 60S ribosomal protein L9 9606  
109 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431  
110 4V6U 54 BF 50S ribosomal protein L6P 186497  
111 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 559292  
112 4ADX 15 E RPL6 187420  
113 3J16 6 F 60S ribosomal protein L6 4932  
114 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932  
115 4V7H 32 BH 60S ribosomal protein L9(A) 5541  
116 4V5Z 57 Be 60S Ribosomal protein L9 9615  
117 4V4B 27 BH 60S ribosomal protein L9-A 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 648
95% 36 68 467
90% 36 68 488
70% 36 68 525
50% 36 118 239
40% 36 118 265
30% 38 325 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48534
95% 1 1 34010
90% 1 1 32518
70% 36 68 518
50% 36 116 246
40% 36 116 273
30% 36 116 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 410
90% 36 74 433
70% 36 74 463
50% 36 74 508
40% 36 74 547
30% 37 317 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 408
90% 36 74 431
70% 36 74 461
50% 36 76 488
40% 36 76 526
30% 36 78 512
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 528
50% 36 70 555
40% 36 70 591
30% 36 70 590
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1681
95% 36 68 465
90% 36 68 486
70% 36 68 523
50% 36 68 589
40% 36 70 590
30% 36 71 571
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 471
90% 36 68 493
70% 36 68 530
50% 36 70 558
40% 36 70 595
30% 36 71 573
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 334
95% 36 68 463
90% 36 68 484
70% 36 68 521
50% 36 68 586
40% 36 68 619
30% 36 119 283
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 413
90% 36 74 436
70% 36 74 467
50% 36 76 490
40% 36 78 507
30% 37 279 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 412
90% 36 74 435
70% 36 74 466
50% 36 125 225
40% 36 125 250
30% 36 125 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 311
95% 34 70 448
90% 34 70 468
70% 34 70 503
50% 34 70 559
40% 34 70 596
30% 34 70 592
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 414
90% 36 74 437
70% 36 74 468
50% 36 74 510
40% 36 74 550
30% 36 74 546
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 464
90% 36 68 485
70% 36 68 522
50% 36 68 587
40% 36 70 589
30% 36 71 568
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 473
90% 36 68 495
70% 36 68 532
50% 36 68 594
40% 36 68 625
30% 36 68 618
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51500
95% 3 5 11398
90% 3 5 11211
70% 3 5 10593
50% 3 5 9516
40% 3 5 8683
30% 3 5 7606
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57135
95% 1 1 39813
90% 1 1 38071
70% 3 21 2265
50% 7 30 1547
40% 7 74 418
30% 26 97 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 475
90% 36 68 497
70% 36 68 534
50% 36 69 576
40% 36 69 613
30% 36 69 608
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58417
95% 36 68 476
90% 36 68 498
70% 36 68 535
50% 36 118 240
40% 36 118 266
30% 36 118 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 494
70% 36 68 531
50% 36 68 593
40% 36 68 624
30% 36 117 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 462
90% 36 68 483
70% 36 68 520
50% 36 68 585
40% 36 117 270
30% 38 320 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1663
95% 35 67 479
90% 35 67 501
70% 35 67 541
50% 35 115 249
40% 35 117 268
30% 35 117 287
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42790
95% 36 74 403
90% 36 74 426
70% 36 74 457
50% 36 74 502
40% 36 122 257
30% 36 122 274
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7856
95% 36 74 406
90% 36 74 429
70% 36 74 460
50% 36 74 504
40% 36 76 523
30% 36 77 519
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 409
90% 36 74 432
70% 36 74 462
50% 36 74 506
40% 36 122 260
30% 36 122 276
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1693
95% 3 21 2212
90% 36 68 490
70% 36 68 527
50% 51 95 303
40% 58 105 290
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50518
95% 1 1 35121
90% 1 7 8086
70% 3 27 1669
50% 36 74 507
40% 36 78 503
30% 36 78 513
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 411
90% 36 74 434
70% 36 74 465
50% 36 74 509
40% 37 77 515
30% 37 78 515
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.