Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 865
95 % 35 68 698
90 % 35 68 728
70 % 35 68 780
50 % 35 180 201
40 % 43 539 20
30 % 43 539 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61028
95 % 1 1 42582
90 % 1 1 40466
70 % 35 68 771
50 % 35 176 205
40 % 35 176 228
30 % 35 176 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 447
95 % 35 74 619
90 % 35 74 647
70 % 35 74 690
50 % 35 74 743
40 % 35 74 778
30 % 42 519 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 445
95 % 35 74 617
90 % 35 74 645
70 % 35 74 687
50 % 35 76 718
40 % 35 76 753
30 % 35 79 717
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 513
95 % 35 68 700
90 % 35 68 731
70 % 35 68 783
50 % 35 70 793
40 % 35 70 830
30 % 35 70 817
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2259
95 % 35 68 697
90 % 35 68 727
70 % 35 68 778
50 % 35 68 822
40 % 35 72 805
30 % 35 72 796
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 514
95 % 35 68 702
90 % 35 68 733
70 % 35 68 785
50 % 35 70 794
40 % 35 70 831
30 % 35 71 807
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 523
95 % 35 68 695
90 % 35 68 725
70 % 35 68 775
50 % 35 68 819
40 % 35 68 856
30 % 35 179 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 452
95 % 35 74 623
90 % 35 74 651
70 % 35 74 697
50 % 35 76 723
40 % 35 78 734
30 % 42 422 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 451
95 % 35 74 622
90 % 35 74 650
70 % 35 74 695
50 % 35 183 199
40 % 35 184 217
30 % 35 184 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 483
95 % 33 70 668
90 % 33 70 694
70 % 33 70 746
50 % 33 70 795
40 % 33 70 832
30 % 33 70 819
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 453
95 % 35 74 624
90 % 35 74 652
70 % 35 74 698
50 % 35 74 748
40 % 42 384 58
30 % 42 410 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 510
95 % 35 68 696
90 % 35 68 726
70 % 35 68 776
50 % 35 68 820
40 % 35 70 828
30 % 35 71 805
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 516
95 % 35 68 704
90 % 35 68 735
70 % 35 68 787
50 % 35 68 827
40 % 35 68 860
30 % 35 68 844
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64470
95 % 3 5 14502
90 % 3 5 14231
70 % 3 5 13370
50 % 3 5 11887
40 % 3 5 10785
30 % 3 5 9353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70904
95 % 1 1 49189
90 % 1 1 46695
70 % 3 21 2958
50 % 7 30 1979
40 % 7 134 287
30 % 26 157 261
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 517
95 % 35 68 705
90 % 35 68 736
70 % 35 68 788
50 % 35 69 809
40 % 35 69 844
30 % 35 69 833
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72343
95 % 35 68 706
90 % 35 68 737
70 % 35 68 789
50 % 35 177 203
40 % 35 177 225
30 % 35 177 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 515
95 % 35 68 703
90 % 35 68 734
70 % 35 68 786
50 % 35 68 826
40 % 35 68 859
30 % 35 173 244
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 509
95 % 35 68 694
90 % 35 68 723
70 % 35 68 773
50 % 35 68 818
40 % 35 178 222
30 % 43 530 35
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2242
95 % 35 68 692
90 % 35 68 721
70 % 35 68 770
50 % 35 175 204
40 % 35 177 224
30 % 35 177 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54106
95 % 35 74 609
90 % 35 74 639
70 % 35 74 683
50 % 35 74 736
40 % 35 184 215
30 % 35 184 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10234
95 % 35 74 613
90 % 35 74 643
70 % 35 74 685
50 % 35 74 738
40 % 35 76 751
30 % 36 78 727
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 446
95 % 35 74 618
90 % 35 74 646
70 % 35 74 688
50 % 35 74 741
40 % 36 184 216
30 % 36 184 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2272
95 % 3 21 2920
90 % 35 68 730
70 % 35 68 782
50 % 50 105 351
40 % 57 124 285
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63338
95 % 1 1 43875
90 % 1 7 10352
70 % 3 27 2210
50 % 35 74 742
40 % 35 79 723
30 % 35 79 719
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 449
95 % 35 74 620
90 % 35 74 648
70 % 35 74 693
50 % 35 74 747
40 % 36 77 745
30 % 36 78 731

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CC7 5 E 50S ribosomal protein L6P 2238
20 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
21 3CCE 5 E 50S ribosomal protein L6P 2238
22 3G6E 6 E 50S ribosomal protein L6P 2238
23 3CPW 7 E 50S ribosomal protein L6P 2238
24 3CCU 5 E 50S ribosomal protein L6P 2238
25 1VQ6 9 E 50S ribosomal protein L6P 2238
26 1M90 8 G RIBOSOMAL PROTEIN L6 2238
27 3CCL 5 E 50S ribosomal protein L6P 2238
28 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
29 1YJ9 7 E 50S ribosomal protein L6P 2238
30 3CD6 5 E 50S ribosomal protein L6P 2238
31 3CCV 5 E 50S ribosomal protein L6P 2238
32 3CC4 5 E 50S ribosomal protein L6P 2238
33 2OTL 7 E 50S ribosomal protein L6P 2238
34 3G71 6 E 50S ribosomal protein L6P 2238
35 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
36 1VQ4 8 E 50S ribosomal protein L6P 2238
37 1YJN 7 E 50S ribosomal protein L6P 2238
38 3CMA 5 E 50S ribosomal protein L6P 2238
39 3CCS 5 E 50S ribosomal protein L6P 2238
40 3CCQ 5 E 50S ribosomal protein L6P 2238
41 3I56 5 E 50S ribosomal protein L6P 2238
42 3CCR 5 E 50S ribosomal protein L6P 2238
43 2OTJ 7 E 50S ribosomal protein L6P 2238
44 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
45 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
46 3OW2 7 E 50S ribosomal protein L6P 2238
47 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
48 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
49 1QVG 8 E 50S ribosomal protein L6P 2238
50 3CME 5 E 50S ribosomal protein L6P 2238
51 2QEX 7 E 50S ribosomal protein L6P 2238
52 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
53 5TBW 11 CK, q 60S ribosomal protein L9-A 4932
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
56 1N8R 7 G 50S ribosomal protein L6P 2238
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
58 1Q81 8 G 50S ribosomal protein L6P 2238
59 1Q82 8 G 50S ribosomal protein L6P 2238
60 1QVF 8 E 50S ribosomal protein L6P 2238
61 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
63 1NJI 7 G 50S ribosomal protein L6P 2238
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
70 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
73 5DAT 46 L9, l9 60S ribosomal protein L9-A 4932
74 3I55 6 E 50S ribosomal protein L6P 2238
75 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
76 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
77 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
78 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
79 1Q86 8 G 50S ribosomal protein L6P 2238
80 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
81 5LYB 46 L9, l9 60S ribosomal protein L9-A 4932
82 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
83 3G4S 6 E 50S ribosomal protein L6P 2238
84 3CCJ 5 E 50S ribosomal protein L6P 2238
85 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
86 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
87 2QA4 7 E 50S ribosomal protein L6P 2238
88 5TGA 46 L9, l9 60S ribosomal protein L9-A 4932
89 5MEI 11 CK, q 60S ribosomal protein L9-A 4932
90 1Q7Y 8 G 50S ribosomal protein L6P 2238
91 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
92 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
93 5DGV 46 L9, l9 60S ribosomal protein L9-A 4932
94 5DGE 46 L9, l9 60S ribosomal protein L9-A 4932
95 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
96 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
97 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
98 5DGF 46 L9, l9 60S ribosomal protein L9-A 4932
99 5TGM 46 L9, l9 60S ribosomal protein L9-A 4932
100 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
101 5XY3 11 H Ribosomal protein L6, putative 5722
102 5XXB 11 H Ribosomal protein uL6 5811
103 5UMD 8 H 60S ribosomal protein L6, putative 5833
104 5MC6 44 AD 60S ribosomal protein L9-A 4932
105 5H4P 11 H 60S ribosomal protein L9-A 4932
106 5M1J 53 H5 60S ribosomal protein L9-A 4932
107 5LZS 8 H Uncharacterized protein 9986
108 5LZT 8 H uL6 9986
109 5LZU 8 H uL6 9986
110 5LZV 8 H uL6 9986
111 5LZW 8 H uL6 9986
112 5LZX 8 H uL6 9986
113 5LZY 8 H uL6 9986
114 5LZZ 8 H uL6 9986
115 5T62 12 K 60S ribosomal protein L9-A 4932
116 5T6R 11 K 60S ribosomal protein L9-A 4932
117 5T2A 49 w uL6 5661
118 5T2C 32 o 60S ribosomal protein L9 9606
119 5LKS 11 LH 60S ribosomal protein L9 9606
120 5JUO 13 M uL6 (yeast L9) 4932
121 5JUP 13 M uL6 (yeast L9) 4932
122 5JUS 13 M uL6 (yeast L9) 4932
123 5JUT 13 M uL6 (yeast L9) 4932
124 5JUU 13 M uL6 (yeast L9) 4932
125 5JCS 15 H 60S ribosomal protein L9-A 4932
126 5IT7 11 HH KLLA0F04499p 28985
127 3JCT 8 H 60S ribosomal protein L9-A 4932
128 3JCS 13 E ribosomal protein L6 5661
129 5GAK 29 L 60S ribosomal protein L9-A 4932
130 5FL8 8 H Rpl9ap 4932
131 5APN 11 H 60S ribosomal protein L9-A 4932
132 5APO 11 H 60S ribosomal protein L9-A 4932
133 3JBN 74 AH 60S ribosomal protein uL6 5833
134 3JBO 74 AH 60S ribosomal protein uL6 5833
135 3JBP 74 AH 60S ribosomal protein uL6 5833
136 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
137 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
138 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
139 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
140 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
141 3JAG 8 H uL6 9986
142 3JAH 8 H uL6 9986
143 3JAI 8 H uL6 9986
144 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
145 5AJ0 10 AH 60S ribosomal protein L9 9606
146 3J92 8 H uL6 9986
147 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
148 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
149 4V3P 39 LF 60S ribosomal protein L9 4565
150 3J7O 11 H Ribosomal protein uL6 9823
151 3J7P 11 H Ribosomal protein uL6 9823
152 3J7Q 11 H Ribosomal protein uL6 9823
153 3J7R 11 H Ribosomal protein uL6 9823
154 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
155 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
156 3J79 8 H 60S ribosomal protein uL6 5833
157 3J77 9 L9 60S ribosomal protein L9 4932
158 3J78 9 L9 60S ribosomal protein L9 4932
159 3J6X 12 L9 60S ribosomal protein L9 4932
160 3J6Y 12 L9 60S ribosomal protein L9 4932
161 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
162 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
163 4V7F 9 F 60S ribosomal protein L9 4932
164 4V7E 43 CH 60S ribosomal protein L6 4565
165 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
166 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
167 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
168 4V6W 80 CH 60S ribosomal protein L9 7227
169 4V6X 80 CH 60S ribosomal protein L9 9606
170 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
171 4V6U 54 BF 50S ribosomal protein L6P 2261
172 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
173 4ADX 15 E RPL6 145262
174 3J16 6 F 60S ribosomal protein L6 4932
175 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
176 4V7H 32 BH 60S ribosomal protein L9(A) 5541
177 4V5Z 57 Be 60S Ribosomal protein L9 9612
178 4V4B 27 BH 60S ribosomal protein L9-A 4932