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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 269 Members. Sequence cutoff: 40% Cluster size: 116 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 7 E 50S ribosomal protein L6P 272569  
2 1VQO 8 E 50S ribosomal protein L6P 2238  
3 1VQ8 8 E 50S ribosomal protein L6P 2238  
4 1S72 7 E 50S ribosomal protein L6P 2238  
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238  
6 1YHQ 7 E 50S ribosomal protein L6P 2238  
7 1VQP 8 E 50S ribosomal protein L6P 2238  
8 1VQM 8 E 50S ribosomal protein L6P 2238  
9 3CC2 5 E 50S ribosomal protein L6P 2238  
10 1VQL 8 E 50S ribosomal protein L6P 2238  
11 1VQK 8 E 50S ribosomal protein L6P 2238  
12 1VQN 9 E 50S ribosomal protein L6P 2238  
13 1YIJ 7 E 50S ribosomal protein L6P 2238  
14 1YI2 7 E 50S ribosomal protein L6P 2238  
15 1VQ9 8 E 50S ribosomal protein L6P 2238  
16 1VQ7 8 E 50S ribosomal protein L6P 2238  
17 3CCM 5 E 50S ribosomal protein L6P 272569  
18 1VQ5 8 E 50S ribosomal protein L6P 2238  
19 3CCJ 5 E 50S ribosomal protein L6P 272569  
20 3CC7 5 E 50S ribosomal protein L6P 2238  
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
22 3CCE 5 E 50S ribosomal protein L6P 272569  
23 3G6E 6 E 50S ribosomal protein L6P 2238  
24 3CPW 7 E 50S ribosomal protein L6P 272569  
25 3CCU 5 E 50S ribosomal protein L6P 272569  
26 1VQ6 9 E 50S ribosomal protein L6P 2238  
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238  
28 3CCL 5 E 50S ribosomal protein L6P 272569  
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
30 1YJ9 7 E 50S ribosomal protein L6P 2238  
31 3CD6 5 E 50S ribosomal protein L6P 272569  
32 3CCV 5 E 50S ribosomal protein L6P 272569  
33 3CC4 5 E 50S ribosomal protein L6P 272569  
34 2OTL 7 E 50S ribosomal protein L6P 2238  
35 3G71 6 E 50S ribosomal protein L6P 2238  
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238  
37 1VQ4 8 E 50S ribosomal protein L6P 2238  
38 1YJN 7 E 50S ribosomal protein L6P 2238  
39 3CMA 5 E 50S ribosomal protein L6P 2238  
40 3CCS 5 E 50S ribosomal protein L6P 272569  
41 3CCQ 5 E 50S ribosomal protein L6P 272569  
42 3I56 5 E 50S ribosomal protein L6P 2238  
43 3CCR 5 E 50S ribosomal protein L6P 272569  
44 2OTJ 7 E 50S ribosomal protein L6P 2238  
45 4V88 46 BH, DH 60S ribosomal protein L9-A 559292  
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238  
47 3OW2 7 E 50S ribosomal protein L6P 2238  
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 559292  
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238  
50 1QVG 8 E 50S ribosomal protein L6P 2238  
51 3CME 5 E 50S ribosomal protein L6P 2238  
52 2QEX 7 E 50S ribosomal protein L6P 2238  
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 559292  
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238  
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 559292  
56 1N8R 7 G 50S ribosomal protein L6P 2238  
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 559292  
58 1Q81 8 G 50S ribosomal protein L6P 2238  
59 1Q82 8 G 50S ribosomal protein L6P 2238  
60 1QVF 8 E 50S ribosomal protein L6P 2238  
61 4U52 46 L9, l9 60S ribosomal protein L9-A 559292  
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 559292  
63 1NJI 7 G 50S ribosomal protein L6P 2238  
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 559292  
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 559292  
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238  
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 559292  
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 559292  
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 559292  
70 4U55 46 L9, l9 60S ribosomal protein L9-A 559292  
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238  
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238  
73 3I55 6 E 50S ribosomal protein L6P 2238  
74 4U51 46 L9, l9 60S ribosomal protein L9-A 559292  
75 1K8A 7 G RIBOSOMAL PROTEIN L6 2238  
76 4U53 46 L9, l9 60S ribosomal protein L9-A 559292  
77 1Q86 8 G 50S ribosomal protein L6P 2238  
78 4U50 46 L9, l9 60S ribosomal protein L9-A 559292  
79 1M1K 7 G RIBOSOMAL PROTEIN L6 2238  
80 3G4S 6 E 50S ribosomal protein L6P 2238  
81 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238  
82 4U56 46 L9, l9 60S ribosomal protein L9-A 559292  
83 2QA4 7 E 50S ribosomal protein L6P 2238  
84 1Q7Y 8 G 50S ribosomal protein L6P 2238  
85 4U4O 46 L9, l9 60S ribosomal protein L9-A 559292  
86 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911  
87 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932  
88 3J7O 11 H Ribosomal protein uL6 9823  
89 3J7P 11 H Ribosomal protein uL6 9823  
90 3J7Q 11 H Ribosomal protein uL6 9823  
91 3J7R 11 H Ribosomal protein uL6 9823  
92 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986  
93 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986  
94 3J79 8 H 60S ribosomal protein uL6 36329  
95 3J77 9 L9 60S ribosomal protein L9 4932  
96 3J78 9 L9 60S ribosomal protein L9 4932  
97 3J6X 12 L9 60S ribosomal protein L9 580240  
98 3J6Y 12 L9 60S ribosomal protein L9 580240  
99 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986  
100 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985  
101 4V7F 9 F 60S ribosomal protein L9 4932  
102 4V7E 43 CH 60S ribosomal protein L6 4565  
103 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932  
104 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932  
105 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190  
106 4V6W 80 CH 60S ribosomal protein L9 7227  
107 4V6X 80 CH 60S ribosomal protein L9 9606  
108 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431  
109 4V6U 54 BF 50S ribosomal protein L6P 186497  
110 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 559292  
111 4ADX 15 E RPL6 187420  
112 3J16 6 F 60S ribosomal protein L6 4932  
113 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932  
114 4V7H 32 BH 60S ribosomal protein L9(A) 5541  
115 4V5Z 57 Be 60S Ribosomal protein L9 9615  
116 4V4B 27 BH 60S ribosomal protein L9-A 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 623
95% 36 68 459
90% 36 68 483
70% 36 68 518
50% 36 117 235
40% 36 117 265
30% 38 317 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47847
95% 1 1 33588
90% 1 1 32114
70% 36 68 511
50% 36 115 239
40% 36 115 274
30% 36 115 295
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 430
70% 36 74 458
50% 36 74 502
40% 36 74 538
30% 37 309 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 404
90% 36 74 428
70% 36 74 456
50% 36 76 483
40% 36 76 517
30% 36 78 509
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 461
90% 36 68 486
70% 36 68 521
50% 36 70 545
40% 36 70 578
30% 36 70 579
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1650
95% 36 68 457
90% 36 68 481
70% 36 68 516
50% 36 68 574
40% 36 70 577
30% 36 71 560
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 523
50% 36 70 548
40% 36 70 582
30% 36 71 563
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 455
90% 36 68 479
70% 36 68 514
50% 36 68 571
40% 36 68 609
30% 36 118 281
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 409
90% 36 74 433
70% 36 74 462
50% 36 76 485
40% 36 78 500
30% 37 272 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 408
90% 36 74 432
70% 36 74 461
50% 36 124 220
40% 36 124 247
30% 36 124 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 308
95% 34 70 441
90% 34 70 462
70% 34 70 496
50% 34 70 549
40% 34 70 583
30% 34 70 581
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 410
90% 36 74 434
70% 36 74 463
50% 36 74 506
40% 36 74 541
30% 36 74 540
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 480
70% 36 68 515
50% 36 68 572
40% 36 70 576
30% 36 71 559
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 525
50% 36 68 579
40% 36 68 616
30% 36 68 609
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50791
95% 3 5 11231
90% 3 5 11051
70% 3 5 10446
50% 3 5 9396
40% 3 5 8566
30% 3 5 7518
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56374
95% 1 1 39340
90% 1 1 37623
70% 3 21 2237
50% 7 30 1518
40% 7 73 413
30% 26 96 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 467
90% 36 68 492
70% 36 68 527
50% 36 69 562
40% 36 69 601
30% 36 69 598
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57644
95% 36 68 468
90% 36 68 493
70% 36 68 528
50% 36 117 237
40% 36 117 267
30% 36 117 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 464
90% 36 68 489
70% 36 68 524
50% 36 68 578
40% 36 68 615
30% 36 116 291
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 478
70% 36 68 513
50% 36 68 569
40% 36 116 269
30% 38 312 53
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1633
95% 35 67 471
90% 35 67 496
70% 35 67 534
50% 35 114 243
40% 35 116 268
30% 35 116 290
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42171
95% 36 74 398
90% 36 74 423
70% 36 74 452
50% 36 74 496
40% 36 121 252
30% 36 121 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7702
95% 36 74 402
90% 36 74 426
70% 36 74 455
50% 36 74 499
40% 36 76 516
30% 36 77 515
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 405
90% 36 74 429
70% 36 74 457
50% 36 74 500
40% 36 121 253
30% 36 121 271
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1660
95% 3 21 2182
90% 36 68 485
70% 36 68 520
50% 51 95 300
40% 58 105 287
30% 58 107 304
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49816
95% 1 1 34691
90% 1 7 7982
70% 3 27 1652
50% 36 74 501
40% 36 78 497
30% 36 78 511
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 407
90% 36 74 431
70% 36 74 459
50% 36 74 503
40% 37 77 508
30% 37 78 512
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.