Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 799
95 % 36 68 632
90 % 36 68 659
70 % 36 68 700
50 % 36 168 203
40 % 36 168 224
30 % 44 495 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57535
95 % 1 1 40079
90 % 1 1 38166
70 % 36 68 691
50 % 36 164 212
40 % 36 164 234
30 % 36 164 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 391
95 % 36 74 551
90 % 36 74 584
70 % 36 74 617
50 % 36 74 666
40 % 36 74 708
30 % 43 481 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 389
95 % 36 74 549
90 % 36 74 582
70 % 36 74 614
50 % 36 76 645
40 % 36 76 689
30 % 36 79 663
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 448
95 % 36 68 633
90 % 36 68 661
70 % 36 68 702
50 % 36 70 720
40 % 36 70 760
30 % 36 70 760
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2115
95 % 36 68 631
90 % 36 68 657
70 % 36 68 698
50 % 36 68 750
40 % 36 72 729
30 % 36 72 727
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 636
90 % 36 68 663
70 % 36 68 707
50 % 36 70 721
40 % 36 70 761
30 % 36 71 742
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 458
95 % 36 68 628
90 % 36 68 654
70 % 36 68 694
50 % 36 68 747
40 % 36 68 780
30 % 36 167 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 398
95 % 36 74 558
90 % 36 74 589
70 % 36 74 623
50 % 36 76 647
40 % 36 78 666
30 % 43 396 56
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 397
95 % 36 74 557
90 % 36 74 588
70 % 36 74 622
50 % 36 172 198
40 % 36 172 219
30 % 36 172 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 430
95 % 34 70 609
90 % 34 70 636
70 % 34 70 670
50 % 34 70 722
40 % 34 70 763
30 % 34 70 762
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 399
95 % 36 74 559
90 % 36 74 590
70 % 36 74 624
50 % 36 74 671
40 % 36 74 712
30 % 36 74 711
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 446
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 68 748
40 % 36 70 757
30 % 36 71 740
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 638
90 % 36 68 665
70 % 36 68 709
50 % 36 68 754
40 % 36 68 784
30 % 36 68 785
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60821
95 % 3 5 13606
90 % 3 5 13361
70 % 3 5 12538
50 % 3 5 11209
40 % 3 5 10174
30 % 3 5 8829
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67053
95 % 1 1 46457
90 % 1 1 44199
70 % 3 21 2783
50 % 7 30 1856
40 % 7 121 306
30 % 26 144 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 453
95 % 36 68 639
90 % 36 68 666
70 % 36 68 711
50 % 36 69 733
40 % 36 69 774
30 % 36 69 776
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68440
95 % 36 68 640
90 % 36 68 667
70 % 36 68 712
50 % 36 165 205
40 % 36 165 229
30 % 36 165 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 451
95 % 36 68 637
90 % 36 68 664
70 % 36 68 708
50 % 36 68 753
40 % 36 68 783
30 % 36 161 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 444
95 % 36 68 627
90 % 36 68 653
70 % 36 68 693
50 % 36 68 746
40 % 36 166 227
30 % 44 486 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2095
95 % 36 68 624
90 % 36 68 651
70 % 36 68 690
50 % 36 163 211
40 % 36 165 228
30 % 36 165 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50907
95 % 36 74 543
90 % 36 74 578
70 % 36 74 609
50 % 36 74 659
40 % 36 172 217
30 % 36 172 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9604
95 % 36 74 545
90 % 36 74 580
70 % 36 74 613
50 % 36 74 662
40 % 36 76 687
30 % 36 77 681
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 390
95 % 36 74 550
90 % 36 74 583
70 % 36 74 615
50 % 36 74 664
40 % 37 172 218
30 % 37 172 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2125
95 % 3 21 2752
90 % 36 68 660
70 % 36 68 701
50 % 51 105 307
40 % 58 120 278
30 % 58 122 277
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59753
95 % 1 1 41317
90 % 1 7 9702
70 % 3 27 2056
50 % 36 74 665
40 % 36 79 654
30 % 36 79 666
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 392
95 % 36 74 552
90 % 36 74 585
70 % 36 74 620
50 % 36 74 669
40 % 37 77 679
30 % 37 78 673

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CCJ 5 E 50S ribosomal protein L6P 2238
20 3CC7 5 E 50S ribosomal protein L6P 2238
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
22 3CCE 5 E 50S ribosomal protein L6P 2238
23 3G6E 6 E 50S ribosomal protein L6P 2238
24 3CPW 7 E 50S ribosomal protein L6P 2238
25 3CCU 5 E 50S ribosomal protein L6P 2238
26 1VQ6 9 E 50S ribosomal protein L6P 2238
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238
28 3CCL 5 E 50S ribosomal protein L6P 2238
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
30 1YJ9 7 E 50S ribosomal protein L6P 2238
31 3CD6 5 E 50S ribosomal protein L6P 2238
32 3CCV 5 E 50S ribosomal protein L6P 2238
33 3CC4 5 E 50S ribosomal protein L6P 2238
34 2OTL 7 E 50S ribosomal protein L6P 2238
35 3G71 6 E 50S ribosomal protein L6P 2238
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
37 1VQ4 8 E 50S ribosomal protein L6P 2238
38 1YJN 7 E 50S ribosomal protein L6P 2238
39 3CMA 5 E 50S ribosomal protein L6P 2238
40 3CCS 5 E 50S ribosomal protein L6P 2238
41 3CCQ 5 E 50S ribosomal protein L6P 2238
42 3I56 5 E 50S ribosomal protein L6P 2238
43 3CCR 5 E 50S ribosomal protein L6P 2238
44 2OTJ 7 E 50S ribosomal protein L6P 2238
45 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
47 3OW2 7 E 50S ribosomal protein L6P 2238
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
50 1QVG 8 E 50S ribosomal protein L6P 2238
51 3CME 5 E 50S ribosomal protein L6P 2238
52 2QEX 7 E 50S ribosomal protein L6P 2238
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
56 1N8R 7 G 50S ribosomal protein L6P 2238
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
58 1Q81 8 G 50S ribosomal protein L6P 2238
59 1Q82 8 G 50S ribosomal protein L6P 2238
60 1QVF 8 E 50S ribosomal protein L6P 2238
61 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
63 1NJI 7 G 50S ribosomal protein L6P 2238
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
70 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
73 5DAT 46 L9, l9 60S ribosomal protein L9-A 4932
74 3I55 6 E 50S ribosomal protein L6P 2238
75 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
76 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
77 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
78 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
79 1Q86 8 G 50S ribosomal protein L6P 2238
80 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
81 5LYB 46 L9, l9 60S ribosomal protein L9-A 4932
82 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
83 3G4S 6 E 50S ribosomal protein L6P 2238
84 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
85 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
86 2QA4 7 E 50S ribosomal protein L6P 2238
87 5TGA 46 L9, l9 60S ribosomal protein L9-A 4932
88 1Q7Y 8 G 50S ribosomal protein L6P 2238
89 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
90 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
91 5DGV 46 L9, l9 60S ribosomal protein L9-A 4932
92 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
93 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
94 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
95 5DGF 46 L9, l9 60S ribosomal protein L9-A 4932
96 5TGM 46 L9, l9 60S ribosomal protein L9-A 4932
97 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
98 5MC6 44 AD 60S ribosomal protein L9-A 4932
99 5M1J 53 H5 60S ribosomal protein L9-A 4932
100 5LZS 8 H Uncharacterized protein 9986
101 5LZT 8 H uL6 9986
102 5LZU 8 H uL6 9986
103 5LZV 8 H uL6 9986
104 5LZW 8 H uL6 9986
105 5LZX 8 H uL6 9986
106 5LZY 8 H uL6 9986
107 5LZZ 8 H uL6 9986
108 5JUO 13 M uL6 (yeast L9) 4932
109 5JUP 13 M uL6 (yeast L9) 4932
110 5JUS 13 M uL6 (yeast L9) 4932
111 5JUT 13 M uL6 (yeast L9) 4932
112 5JUU 13 M uL6 (yeast L9) 4932
113 5JCS 15 H 60S ribosomal protein L9-A 4932
114 5IT7 11 HH KLLA0F04499p 28985
115 3JCT 8 H 60S ribosomal protein L9-A 4932
116 3JCS 13 E ribosomal protein L6 5661
117 5GAK 29 L 60S ribosomal protein L9-A 4932
118 5FL8 8 H Rpl9ap 4932
119 5APN 11 H 60S ribosomal protein L9-A 4932
120 5APO 11 H 60S ribosomal protein L9-A 4932
121 3JBN 74 AH 60S ribosomal protein uL6 5833
122 3JBO 74 AH 60S ribosomal protein uL6 5833
123 3JBP 74 AH 60S ribosomal protein uL6 5833
124 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
125 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
126 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
127 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
128 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
129 3JAG 8 H uL6 9986
130 3JAH 8 H uL6 9986
131 3JAI 8 H uL6 9986
132 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
133 5AJ0 10 AH 60S ribosomal protein L9 9606
134 3J92 8 H uL6 9986
135 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
136 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
137 4V3P 39 LF 60S ribosomal protein L9 4565
138 3J7O 11 H Ribosomal protein uL6 9823
139 3J7P 11 H Ribosomal protein uL6 9823
140 3J7Q 11 H Ribosomal protein uL6 9823
141 3J7R 11 H Ribosomal protein uL6 9823
142 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
143 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
144 3J79 8 H 60S ribosomal protein uL6 5833
145 3J77 9 L9 60S ribosomal protein L9 4932
146 3J78 9 L9 60S ribosomal protein L9 4932
147 3J6X 12 L9 60S ribosomal protein L9 4932
148 3J6Y 12 L9 60S ribosomal protein L9 4932
149 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
150 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
151 4V7F 9 F 60S ribosomal protein L9 4932
152 4V7E 43 CH 60S ribosomal protein L6 4565
153 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
154 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
155 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
156 4V6W 80 CH 60S ribosomal protein L9 7227
157 4V6X 80 CH 60S ribosomal protein L9 9606
158 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
159 4V6U 54 BF 50S ribosomal protein L6P 2261
160 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
161 4ADX 15 E RPL6 145262
162 3J16 6 F 60S ribosomal protein L6 4932
163 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
164 4V7H 32 BH 60S ribosomal protein L9(A) 5541
165 4V5Z 57 Be 60S Ribosomal protein L9 9612
166 4V4B 27 BH 60S ribosomal protein L9-A 4932