Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 754
95 % 36 68 537
90 % 36 68 564
70 % 36 68 615
50 % 36 145 219
40 % 36 145 247
30 % 44 439 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55066
95 % 1 1 38429
90 % 1 1 36618
70 % 36 68 609
50 % 36 140 231
40 % 36 140 259
30 % 36 140 269
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 74 631
40 % 36 74 674
30 % 43 428 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 76 609
40 % 36 76 652
30 % 36 78 637
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 538
90 % 36 68 566
70 % 36 68 617
50 % 36 70 678
40 % 36 70 721
30 % 36 70 727
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1967
95 % 36 68 536
90 % 36 68 563
70 % 36 68 614
50 % 36 68 706
40 % 36 70 719
30 % 36 71 710
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 539
90 % 36 68 568
70 % 36 68 619
50 % 36 70 680
40 % 36 70 723
30 % 36 71 713
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 371
95 % 36 68 534
90 % 36 68 561
70 % 36 68 612
50 % 36 68 703
40 % 36 68 740
30 % 36 144 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 476
90 % 36 74 505
70 % 36 74 551
50 % 36 76 611
40 % 36 78 628
30 % 43 366 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 474
90 % 36 74 503
70 % 36 74 549
50 % 36 149 215
40 % 36 149 240
30 % 36 149 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 345
95 % 34 70 514
90 % 34 70 540
70 % 34 70 590
50 % 34 70 681
40 % 34 70 724
30 % 34 70 728
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 477
90 % 36 74 506
70 % 36 74 552
50 % 36 74 637
40 % 36 74 679
30 % 36 74 677
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 535
90 % 36 68 562
70 % 36 68 613
50 % 36 68 704
40 % 36 70 718
30 % 36 71 709
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 621
50 % 36 68 708
40 % 36 68 744
30 % 36 68 747
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58262
95 % 3 5 12992
90 % 3 5 12753
70 % 3 5 12001
50 % 3 5 10746
40 % 3 5 9787
30 % 3 5 8520
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64321
95 % 1 1 44627
90 % 1 1 42509
70 % 3 21 2614
50 % 7 30 1756
40 % 7 98 361
30 % 26 121 312
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 365
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 69 694
40 % 36 69 735
30 % 36 69 741
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65673
95 % 36 68 544
90 % 36 68 572
70 % 36 68 623
50 % 36 142 226
40 % 36 142 256
30 % 36 142 263
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 540
90 % 36 68 569
70 % 36 68 620
50 % 36 68 707
40 % 36 68 743
30 % 36 139 271
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 533
90 % 36 68 560
70 % 36 68 611
50 % 36 68 702
40 % 36 144 248
30 % 44 434 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 36 68 531
90 % 36 68 558
70 % 36 68 608
50 % 36 140 230
40 % 36 142 255
30 % 36 142 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48689
95 % 36 74 461
90 % 36 74 490
70 % 36 74 536
50 % 36 74 622
40 % 36 149 235
30 % 36 149 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9065
95 % 36 74 464
90 % 36 74 493
70 % 36 74 539
50 % 36 74 625
40 % 36 76 651
30 % 36 77 643
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 74 629
40 % 37 150 233
30 % 37 150 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1976
95 % 3 21 2571
90 % 36 68 565
70 % 36 68 616
50 % 51 97 347
40 % 58 111 309
30 % 58 113 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57223
95 % 1 1 39634
90 % 1 7 9235
70 % 3 27 1917
50 % 36 74 630
40 % 36 79 615
30 % 36 79 625
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 472
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 37 77 640
30 % 37 78 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CCJ 5 E 50S ribosomal protein L6P 2238
20 3CC7 5 E 50S ribosomal protein L6P 2238
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
22 3CCE 5 E 50S ribosomal protein L6P 2238
23 3G6E 6 E 50S ribosomal protein L6P 2238
24 3CPW 7 E 50S ribosomal protein L6P 2238
25 3CCU 5 E 50S ribosomal protein L6P 2238
26 1VQ6 9 E 50S ribosomal protein L6P 2238
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238
28 3CCL 5 E 50S ribosomal protein L6P 2238
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
30 1YJ9 7 E 50S ribosomal protein L6P 2238
31 3CD6 5 E 50S ribosomal protein L6P 2238
32 3CCV 5 E 50S ribosomal protein L6P 2238
33 3CC4 5 E 50S ribosomal protein L6P 2238
34 2OTL 7 E 50S ribosomal protein L6P 2238
35 3G71 6 E 50S ribosomal protein L6P 2238
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
37 1VQ4 8 E 50S ribosomal protein L6P 2238
38 1YJN 7 E 50S ribosomal protein L6P 2238
39 3CMA 5 E 50S ribosomal protein L6P 2238
40 3CCS 5 E 50S ribosomal protein L6P 2238
41 3CCQ 5 E 50S ribosomal protein L6P 2238
42 3I56 5 E 50S ribosomal protein L6P 2238
43 3CCR 5 E 50S ribosomal protein L6P 2238
44 2OTJ 7 E 50S ribosomal protein L6P 2238
45 4V88 46 BH, DH 60S ribosomal protein L9-A 4932
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
47 3OW2 7 E 50S ribosomal protein L6P 2238
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 4932
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
50 1QVG 8 E 50S ribosomal protein L6P 2238
51 3CME 5 E 50S ribosomal protein L6P 2238
52 2QEX 7 E 50S ribosomal protein L6P 2238
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 4932
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 4932
56 1N8R 7 G 50S ribosomal protein L6P 2238
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 4932
58 1Q81 8 G 50S ribosomal protein L6P 2238
59 1Q82 8 G 50S ribosomal protein L6P 2238
60 1QVF 8 E 50S ribosomal protein L6P 2238
61 4U52 46 L9, l9 60S ribosomal protein L9-A 4932
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 4932
63 1NJI 7 G 50S ribosomal protein L6P 2238
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 4932
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 4932
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 4932
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 4932
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 4932
70 4U55 46 L9, l9 60S ribosomal protein L9-A 4932
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
73 3I55 6 E 50S ribosomal protein L6P 2238
74 5I4L 46 L9, l9 60S ribosomal protein L9-A 4932
75 4U51 46 L9, l9 60S ribosomal protein L9-A 4932
76 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
77 4U53 46 L9, l9 60S ribosomal protein L9-A 4932
78 1Q86 8 G 50S ribosomal protein L6P 2238
79 4U50 46 L9, l9 60S ribosomal protein L9-A 4932
80 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
81 3G4S 6 E 50S ribosomal protein L6P 2238
82 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
83 4U56 46 L9, l9 60S ribosomal protein L9-A 4932
84 2QA4 7 E 50S ribosomal protein L6P 2238
85 1Q7Y 8 G 50S ribosomal protein L6P 2238
86 5FCJ 46 L9, l9 60S ribosomal protein L9-A 4932
87 4U4O 46 L9, l9 60S ribosomal protein L9-A 4932
88 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911
89 5FCI 46 L9, l9 60S ribosomal protein L9-A 4932
90 5DC3 46 L9, l9 60S ribosomal protein L9-A 4932
91 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932
92 5IT7 11 HH KLLA0F04499p 28985
93 3JCT 8 H 60S ribosomal protein L9-A 4932
94 3JCS 13 E ribosomal protein L6 5661
95 5GAK 29 L 60S ribosomal protein L9-A 4932
96 5FL8 8 H Rpl9ap 4932
97 5APN 11 H 60S ribosomal protein L9-A 4932
98 5APO 11 H 60S ribosomal protein L9-A 4932
99 3JBN 74 AH 60S ribosomal protein uL6 5833
100 3JBO 74 AH 60S ribosomal protein uL6 5833
101 3JBP 74 AH 60S ribosomal protein uL6 5833
102 5AN9 2 B 60S RIBOSOMAL PROTEIN L9 44689
103 5ANB 2 B 60S RIBOSOMAL PROTEIN L9 44689
104 5ANC 2 B 60S RIBOSOMAL PROTEIN L9 44689
105 3JAN 4 H Ribosomal protein uL6 SEE REMARK 999 9986
106 3JAJ 4 H Ribosomal protein uL6 SEE REMARK 999 9986
107 3JAG 8 H uL6 9986
108 3JAH 8 H uL6 9986
109 3JAI 8 H uL6 9986
110 4UG0 11 LH 60S RIBOSOMAL PROTEIN L9 9606
111 5AJ0 10 AH 60S ribosomal protein L9 9606
112 3J92 8 H uL6 9986
113 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986
114 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986
115 4V3P 39 LF 60S ribosomal protein L9 4565
116 3J7O 11 H Ribosomal protein uL6 9823
117 3J7P 11 H Ribosomal protein uL6 9823
118 3J7Q 11 H Ribosomal protein uL6 9823
119 3J7R 11 H Ribosomal protein uL6 9823
120 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986
121 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986
122 3J79 8 H 60S ribosomal protein uL6 5833
123 3J77 9 L9 60S ribosomal protein L9 4932
124 3J78 9 L9 60S ribosomal protein L9 4932
125 3J6X 12 L9 60S ribosomal protein L9 4932
126 3J6Y 12 L9 60S ribosomal protein L9 4932
127 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986
128 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985
129 4V7F 9 F 60S ribosomal protein L9 4932
130 4V7E 43 CH 60S ribosomal protein L6 4565
131 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
132 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932
133 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190
134 4V6W 80 CH 60S ribosomal protein L9 7227
135 4V6X 80 CH 60S ribosomal protein L9 9606
136 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431
137 4V6U 54 BF 50S ribosomal protein L6P 2261
138 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 4932
139 4ADX 15 E RPL6 145262
140 3J16 6 F 60S ribosomal protein L6 4932
141 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932
142 4V7H 32 BH 60S ribosomal protein L9(A) 5541
143 4V5Z 57 Be 60S Ribosomal protein L9 9612
144 4V4B 27 BH 60S ribosomal protein L9-A 4932