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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 267 Members. Sequence cutoff: 40% Cluster size: 121 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 7 E 50S ribosomal protein L6P 272569  
2 1VQO 8 E 50S ribosomal protein L6P 2238  
3 1VQ8 8 E 50S ribosomal protein L6P 2238  
4 1S72 7 E 50S ribosomal protein L6P 2238  
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238  
6 1YHQ 7 E 50S ribosomal protein L6P 2238  
7 1VQP 8 E 50S ribosomal protein L6P 2238  
8 1VQM 8 E 50S ribosomal protein L6P 2238  
9 3CC2 5 E 50S ribosomal protein L6P 2238  
10 1VQL 8 E 50S ribosomal protein L6P 2238  
11 1VQK 8 E 50S ribosomal protein L6P 2238  
12 1VQN 9 E 50S ribosomal protein L6P 2238  
13 1YIJ 7 E 50S ribosomal protein L6P 2238  
14 1YI2 7 E 50S ribosomal protein L6P 2238  
15 1VQ9 8 E 50S ribosomal protein L6P 2238  
16 1VQ7 8 E 50S ribosomal protein L6P 2238  
17 3CCM 5 E 50S ribosomal protein L6P 2238  
18 1VQ5 8 E 50S ribosomal protein L6P 2238  
19 3CCJ 5 E 50S ribosomal protein L6P 2238  
20 3CC7 5 E 50S ribosomal protein L6P 2238  
21 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
22 3CCE 5 E 50S ribosomal protein L6P 2238  
23 3G6E 6 E 50S ribosomal protein L6P 2238  
24 3CPW 7 E 50S ribosomal protein L6P 2238  
25 3CCU 5 E 50S ribosomal protein L6P 2238  
26 1VQ6 9 E 50S ribosomal protein L6P 2238  
27 1M90 8 G RIBOSOMAL PROTEIN L6 2238  
28 3CCL 5 E 50S ribosomal protein L6P 2238  
29 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238  
30 1YJ9 7 E 50S ribosomal protein L6P 2238  
31 3CD6 5 E 50S ribosomal protein L6P 2238  
32 3CCV 5 E 50S ribosomal protein L6P 2238  
33 3CC4 5 E 50S ribosomal protein L6P 2238  
34 2OTL 7 E 50S ribosomal protein L6P 2238  
35 3G71 6 E 50S ribosomal protein L6P 2238  
36 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238  
37 1VQ4 8 E 50S ribosomal protein L6P 2238  
38 1YJN 7 E 50S ribosomal protein L6P 2238  
39 3CMA 5 E 50S ribosomal protein L6P 2238  
40 3CCS 5 E 50S ribosomal protein L6P 2238  
41 3CCQ 5 E 50S ribosomal protein L6P 2238  
42 3I56 5 E 50S ribosomal protein L6P 2238  
43 3CCR 5 E 50S ribosomal protein L6P 2238  
44 2OTJ 7 E 50S ribosomal protein L6P 2238  
45 4V88 46 BH, DH 60S ribosomal protein L9-A 559292  
46 1KQS 9 E RIBOSOMAL PROTEIN L6 2238  
47 3OW2 7 E 50S ribosomal protein L6P 2238  
48 4U4R 46 L9, l9 60S ribosomal protein L9-A 559292  
49 3CXC 8 E RIBOSOMAL PROTEIN L6 2238  
50 1QVG 8 E 50S ribosomal protein L6P 2238  
51 3CME 5 E 50S ribosomal protein L6P 2238  
52 2QEX 7 E 50S ribosomal protein L6P 2238  
53 4U3U 46 L9, l9 60S ribosomal protein L9-A 559292  
54 1KC8 7 G RIBOSOMAL PROTEIN L6 2238  
55 4U3M 46 L9, l9 60S ribosomal protein L9-A 559292  
56 1N8R 7 G 50S ribosomal protein L6P 2238  
57 4U3N 46 L9, l9 60S ribosomal protein L9-A 559292  
58 1Q81 8 G 50S ribosomal protein L6P 2238  
59 1Q82 8 G 50S ribosomal protein L6P 2238  
60 1QVF 8 E 50S ribosomal protein L6P 2238  
61 4U52 46 L9, l9 60S ribosomal protein L9-A 559292  
62 4U4Q 46 L9, l9 60S ribosomal protein L9-A 559292  
63 1NJI 7 G 50S ribosomal protein L6P 2238  
64 4U6F 46 L9, l9 60S ribosomal protein L9-A 559292  
65 4U4U 46 L9, l9 60S ribosomal protein L9-A 559292  
66 1K73 7 G RIBOSOMAL PROTEIN L6 2238  
67 4U4Z 46 L9, l9 60S ribosomal protein L9-A 559292  
68 4U4Y 46 L9, l9 60S ribosomal protein L9-A 559292  
69 4U4N 46 L9, l9 60S ribosomal protein L9-A 559292  
70 4U55 46 L9, l9 60S ribosomal protein L9-A 559292  
71 1K9M 7 G RIBOSOMAL PROTEIN L6 2238  
72 1KD1 7 G RIBOSOMAL PROTEIN L6 2238  
73 3I55 6 E 50S ribosomal protein L6P 2238  
74 4U51 46 L9, l9 60S ribosomal protein L9-A 559292  
75 1K8A 7 G RIBOSOMAL PROTEIN L6 2238  
76 4U53 46 L9, l9 60S ribosomal protein L9-A 559292  
77 1Q86 8 G 50S ribosomal protein L6P 2238  
78 4U50 46 L9, l9 60S ribosomal protein L9-A 559292  
79 1M1K 7 G RIBOSOMAL PROTEIN L6 2238  
80 3G4S 6 E 50S ribosomal protein L6P 2238  
81 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238  
82 4U56 46 L9, l9 60S ribosomal protein L9-A 559292  
83 2QA4 7 E 50S ribosomal protein L6P 2238  
84 1Q7Y 8 G 50S ribosomal protein L6P 2238  
85 4U4O 46 L9, l9 60S ribosomal protein L9-A 559292  
86 4V8P 26 BE, CE, EE, GE 60S RIBOSOMAL PROTEIN L9 5911  
87 4V7R 40 BI, DI 60S ribosomal protein L9-A 4932  
88 5AJ0 10 AH 60S ribosomal protein L9 9606  
89 3J92 8 H uL6 9986  
90 4D67 8 H 60S RIBOSOMAL PROTEIN L9 9986  
91 4D5Y 8 H 60S RIBOSOMAL PROTEIN UL6 9986  
92 4V3P 39 LF 60S ribosomal protein L9 4565  
93 3J7O 11 H Ribosomal protein uL6 9823  
94 3J7P 11 H Ribosomal protein uL6 9823  
95 3J7Q 11 H Ribosomal protein uL6 9823  
96 3J7R 11 H Ribosomal protein uL6 9823  
97 4UJC 14 BH 60S RIBOSOMAL PROTEIN L9 9986  
98 4UJD 11 AH 60S RIBOSOMAL PROTEIN L9 9986  
99 3J79 8 H 60S ribosomal protein uL6 36329  
100 3J77 9 L9 60S ribosomal protein L9 4932  
101 3J78 9 L9 60S ribosomal protein L9 4932  
102 3J6X 12 L9 60S ribosomal protein L9 580240  
103 3J6Y 12 L9 60S ribosomal protein L9 580240  
104 4UJE 45 CH 60S RIBOSOMAL PROTEIN L9 9986  
105 4V91 11 H UL6 RIBOSOMAL PROTEIN UL6 28985  
106 4V7F 9 F 60S ribosomal protein L9 4932  
107 4V7E 43 CH 60S ribosomal protein L6 4565  
108 4V8Y 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932  
109 4V8Z 42 BH 60S RIBOSOMAL PROTEIN L9-A 4932  
110 4V4N 50 AF 50S ribosomal protein L6P SEE REMARK 999 2190  
111 4V6W 80 CH 60S ribosomal protein L9 7227  
112 4V6X 80 CH 60S ribosomal protein L9 9606  
113 4V8M 84 By 60S RIBOSOMAL PROTEIN L9, PUTATIVE 185431  
114 4V6U 54 BF 50S ribosomal protein L6P 186497  
115 4V8T 8 H 60S RIBOSOMAL PROTEIN L9-A 559292  
116 4ADX 15 E RPL6 187420  
117 3J16 6 F 60S ribosomal protein L6 4932  
118 4V6I 36 BF 60S ribosomal protein rpL9 (L6p) 4932  
119 4V7H 32 BH 60S ribosomal protein L9(A) 5541  
120 4V5Z 57 Be 60S Ribosomal protein L9 9615  
121 4V4B 27 BH 60S ribosomal protein L9-A 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 670
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 122 239
40% 36 122 263
30% 41 343 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49590
95% 1 1 34765
90% 1 1 33215
70% 36 68 531
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 74 523
40% 36 74 565
30% 40 335 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 76 499
40% 36 76 540
30% 36 78 524
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 501
70% 36 68 541
50% 36 70 581
40% 36 70 617
30% 36 70 618
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1720
95% 36 68 473
90% 36 68 496
70% 36 68 536
50% 36 68 616
40% 36 70 616
30% 36 71 595
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 503
70% 36 68 543
50% 36 70 584
40% 36 70 621
30% 36 71 598
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 471
90% 36 68 494
70% 36 68 534
50% 36 68 613
40% 36 68 648
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 76 500
40% 36 78 521
30% 40 293 68
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 419
90% 36 74 444
70% 36 74 476
50% 36 129 222
40% 36 129 248
30% 36 129 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 315
95% 34 70 456
90% 34 70 477
70% 34 70 513
50% 34 70 585
40% 34 70 622
30% 34 70 620
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 74 526
40% 36 74 567
30% 36 74 561
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 495
70% 36 68 535
50% 36 68 614
40% 36 70 615
30% 36 71 594
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 481
90% 36 68 505
70% 36 68 545
50% 36 68 620
40% 36 68 653
30% 36 68 648
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52588
95% 3 5 11595
90% 3 5 11406
70% 3 5 10789
50% 3 5 9686
40% 3 5 8843
30% 3 5 7734
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58302
95% 1 1 40634
90% 1 1 38822
70% 3 21 2323
50% 7 30 1581
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 483
90% 36 68 507
70% 36 68 547
50% 36 69 603
40% 36 69 640
30% 36 69 635
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59601
95% 36 68 484
90% 36 68 508
70% 36 68 549
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 480
90% 36 68 504
70% 36 68 544
50% 36 68 619
40% 36 68 652
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 470
90% 36 68 493
70% 36 68 533
50% 36 68 611
40% 36 121 267
30% 41 338 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1703
95% 36 68 468
90% 36 68 491
70% 36 68 530
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43763
95% 36 74 409
90% 36 74 434
70% 36 74 466
50% 36 74 516
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8042
95% 36 74 413
90% 36 74 438
70% 36 74 469
50% 36 74 518
40% 36 76 537
30% 36 77 531
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 521
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1731
95% 3 21 2270
90% 36 68 500
70% 36 68 540
50% 51 95 311
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51602
95% 1 1 35892
90% 1 7 8253
70% 3 27 1707
50% 36 74 522
40% 36 79 508
30% 36 79 516
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 525
40% 37 77 531
30% 37 78 526
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.