Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 916
95 % 35 68 735 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 764
70 % 35 68 817
50 % 35 197 201
40 % 45 583 20
30 % 45 583 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63992
95 % 1 1 44588
90 % 1 1 42287
70 % 35 68 808
50 % 35 196 203
40 % 35 196 216
30 % 35 196 227
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 470
95 % 35 74 649 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 725
50 % 35 74 778
40 % 35 74 817
30 % 44 558 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 647 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 673
70 % 35 74 721
50 % 35 76 755
40 % 35 76 792
30 % 35 79 748
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 542
95 % 35 68 737 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 767
70 % 35 68 820
50 % 35 70 828
40 % 35 70 868
30 % 35 70 853
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2413
95 % 35 68 734 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 763
70 % 35 68 816
50 % 35 68 859
40 % 35 72 838
30 % 35 72 831
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 544
95 % 35 68 739 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 769
70 % 35 68 822
50 % 35 70 829
40 % 35 70 869
30 % 35 71 843
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 556
95 % 35 68 732 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 761
70 % 35 68 813
50 % 35 68 856
40 % 35 68 895
30 % 35 199 223
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 475
95 % 35 74 653 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 680
70 % 35 74 728
50 % 35 77 749
40 % 35 79 753
30 % 44 449 65
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 474
95 % 35 74 652 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 679
70 % 35 74 727
50 % 35 203 195
40 % 35 204 208
30 % 35 204 218
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 510
95 % 33 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 730
70 % 33 70 779
50 % 33 70 831
40 % 33 70 871
30 % 33 70 856
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 476
95 % 35 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 681
70 % 35 74 729
50 % 35 74 782
40 % 44 409 52
30 % 44 435 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 540
95 % 35 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 814
50 % 35 68 857
40 % 35 70 867
30 % 35 71 840
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 546
95 % 35 68 741 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 771
70 % 35 68 824
50 % 35 68 864
40 % 35 68 898
30 % 35 68 880
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67562
95 % 3 5 15257 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14973
70 % 3 5 14036
50 % 3 5 12446
40 % 3 5 11273
30 % 3 5 9788
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74179
95 % 1 1 51364
90 % 1 1 48669
70 % 3 21 3113
50 % 7 30 2092
40 % 7 146 272
30 % 26 169 249
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 547
95 % 35 68 742 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 825
50 % 35 69 843
40 % 35 69 883
30 % 35 69 867
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75659
95 % 35 68 743 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 773
70 % 35 68 826
50 % 35 189 204
40 % 35 189 222
30 % 35 189 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 545
95 % 35 68 740 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 770
70 % 35 68 823
50 % 35 68 863
40 % 35 68 897
30 % 35 184 237
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 539
95 % 35 68 731 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 811
50 % 35 68 855
40 % 35 194 218
30 % 45 573 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2395
95 % 35 68 728 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 805
50 % 35 187 206
40 % 44 560 22
30 % 44 560 39
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56719
95 % 35 74 638 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 667
70 % 35 74 716
50 % 35 74 771
40 % 35 202 210
30 % 35 202 219
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10837
95 % 35 74 641 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 670
70 % 35 74 718
50 % 35 74 773
40 % 35 76 788
30 % 36 78 762
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 469
95 % 35 74 648 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 674
70 % 35 74 722
50 % 35 74 775
40 % 36 196 215
30 % 36 196 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2425
95 % 3 21 3095 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 766
70 % 35 68 819
50 % 51 107 388
40 % 58 128 286
30 % 58 130 293
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66381
95 % 1 1 45916
90 % 1 7 10900
70 % 3 27 2342
50 % 35 74 776
40 % 35 79 752
30 % 35 79 750
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 472
95 % 35 74 650
90 % 35 74 676
70 % 35 74 726
50 % 35 74 781
40 % 36 77 780
30 % 36 78 768

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 7 E 50S ribosomal protein L6P 2238
2 1VQO 8 E 50S ribosomal protein L6P 2238
3 1VQ8 8 E 50S ribosomal protein L6P 2238
4 1S72 7 E 50S ribosomal protein L6P 2238
5 1JJ2 7 E RIBOSOMAL PROTEIN L6 2238
6 1YHQ 7 E 50S ribosomal protein L6P 2238
7 1VQP 8 E 50S ribosomal protein L6P 2238
8 1VQM 8 E 50S ribosomal protein L6P 2238
9 3CC2 5 E 50S ribosomal protein L6P 2238
10 1VQL 8 E 50S ribosomal protein L6P 2238
11 1VQK 8 E 50S ribosomal protein L6P 2238
12 1VQN 9 E 50S ribosomal protein L6P 2238
13 1YIJ 7 E 50S ribosomal protein L6P 2238
14 1YI2 7 E 50S ribosomal protein L6P 2238
15 1VQ9 8 E 50S ribosomal protein L6P 2238
16 1VQ7 8 E 50S ribosomal protein L6P 2238
17 3CCM 5 E 50S ribosomal protein L6P 2238
18 1VQ5 8 E 50S ribosomal protein L6P 2238
19 3CC7 5 E 50S ribosomal protein L6P 2238
20 1YIT 11 E 50S RIBOSOMAL PROTEIN L6P 2238
21 3CCE 5 E 50S ribosomal protein L6P 2238
22 3G6E 6 E 50S ribosomal protein L6P 2238
23 3CPW 7 E 50S ribosomal protein L6P 2238
24 3CCU 5 E 50S ribosomal protein L6P 2238
25 1VQ6 9 E 50S ribosomal protein L6P 2238
26 1M90 8 G RIBOSOMAL PROTEIN L6 2238
27 3CCL 5 E 50S ribosomal protein L6P 2238
28 1YJW 11 E 50S RIBOSOMAL PROTEIN L6P 2238
29 1YJ9 7 E 50S ribosomal protein L6P 2238
30 3CD6 5 E 50S ribosomal protein L6P 2238
31 3CCV 5 E 50S ribosomal protein L6P 2238
32 3CC4 5 E 50S ribosomal protein L6P 2238
33 2OTL 7 E 50S ribosomal protein L6P 2238
34 3G71 6 E 50S ribosomal protein L6P 2238
35 1FFK 29 1 RIBOSOMAL PROTEIN L6 2238
36 1VQ4 8 E 50S ribosomal protein L6P 2238
37 1YJN 7 E 50S ribosomal protein L6P 2238
38 3CMA 5 E 50S ribosomal protein L6P 2238
39 3CCS 5 E 50S ribosomal protein L6P 2238
40 3CCQ 5 E 50S ribosomal protein L6P 2238
41 3I56 5 E 50S ribosomal protein L6P 2238
42 3CCR 5 E 50S ribosomal protein L6P 2238
43 2OTJ 7 E 50S ribosomal protein L6P 2238
44 1KQS 9 E RIBOSOMAL PROTEIN L6 2238
45 3OW2 7 E 50S ribosomal protein L6P 2238
46 3CXC 8 E RIBOSOMAL PROTEIN L6 2238
47 1QVG 8 E 50S ribosomal protein L6P 2238
48 3CME 5 E 50S ribosomal protein L6P 2238
49 2QEX 7 E 50S ribosomal protein L6P 2238
50 1KC8 7 G RIBOSOMAL PROTEIN L6 2238
51 1N8R 7 G 50S ribosomal protein L6P 2238
52 1Q81 8 G 50S ribosomal protein L6P 2238
53 1Q82 8 G 50S ribosomal protein L6P 2238
54 1QVF 8 E 50S ribosomal protein L6P 2238
55 1NJI 7 G 50S ribosomal protein L6P 2238
56 1K73 7 G RIBOSOMAL PROTEIN L6 2238
57 1K9M 7 G RIBOSOMAL PROTEIN L6 2238
58 1KD1 7 G RIBOSOMAL PROTEIN L6 2238
59 3I55 6 E 50S ribosomal protein L6P 2238
60 1K8A 7 G RIBOSOMAL PROTEIN L6 2238
61 1Q86 8 G 50S ribosomal protein L6P 2238
62 1M1K 7 G RIBOSOMAL PROTEIN L6 2238
63 3G4S 6 E 50S ribosomal protein L6P 2238
64 3CCJ 5 E 50S ribosomal protein L6P 2238
65 1W2B 10 E 50S RIBOSOMAL PROTEIN L6P 2238
66 2QA4 7 E 50S ribosomal protein L6P 2238
67 1Q7Y 8 G 50S ribosomal protein L6P 2238
68 4ADX 15 E RPL6 145262