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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 549 Members. Sequence cutoff: 70% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 31 3 50S ribosomal protein L44e 272569  
2 1VQO 31 3 50S ribosomal protein L44E 2238  
3 1VQ8 31 3 50S ribosomal protein L44E 2238  
4 1S72 31 3 50S ribosomal protein L44E 2238  
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238  
6 1YHQ 31 3 50S ribosomal protein L44E 2238  
7 1VQP 31 3 50S ribosomal protein L44E 2238  
8 1VQM 31 3 50S ribosomal protein L44E 2238  
9 3CC2 29 3 50S ribosomal protein L44E 2238  
10 1VQL 31 3 50S ribosomal protein L44E 2238  
11 1VQK 31 3 50S ribosomal protein L44E 2238  
12 1VQN 32 3 50S ribosomal protein L44E 2238  
13 1YIJ 31 3 50S ribosomal protein L44E 2238  
14 1YI2 31 3 50S ribosomal protein L44E 2238  
15 1VQ9 31 3 50S ribosomal protein L44E 2238  
16 1VQ7 31 3 50S ribosomal protein L44E 2238  
17 3CCM 29 3 50S ribosomal protein L44E 2238  
18 1VQ5 31 3 50S ribosomal protein L44E 2238  
19 3CCJ 29 3 50S ribosomal protein L44E 2238  
20 3CC7 29 3 50S ribosomal protein L44E 2238  
21 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238  
22 3CCE 29 3 50S ribosomal protein L44E 2238  
23 3G6E 30 3 50S ribosomal protein L44E 2238  
24 3CPW 30 2 50S ribosomal protein L44E 2238  
25 3CCU 29 3 50S ribosomal protein L44E 2238  
26 1VQ6 32 3 50S ribosomal protein L44E 2238  
27 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238  
28 3CCL 29 3 50S ribosomal protein L44E 2238  
29 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238  
30 1YJ9 31 3 50S ribosomal protein L44E 2238  
31 3CD6 29 3 50S ribosomal protein L44E 2238  
32 3CCV 29 3 50S ribosomal protein L44E 2238  
33 3CC4 29 3 50S ribosomal protein L44E 2238  
34 2OTL 30 3 50S ribosomal protein L44E 2238  
35 3G71 30 3 50S ribosomal protein L44E 2238  
36 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238  
37 1VQ4 31 3 50S ribosomal protein L44E 2238  
38 1YJN 31 3 50S ribosomal protein L44E 2238  
39 3CMA 29 3 50S ribosomal protein L44E 2238  
40 3CCS 29 3 50S ribosomal protein L44E 2238  
41 3CCQ 29 3 50S ribosomal protein L44E 2238  
42 3I56 29 3 50S ribosomal protein L44E 2238  
43 3CCR 29 3 50S ribosomal protein L44E 2238  
44 2OTJ 30 3 50S ribosomal protein L44E 2238  
45 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238  
46 3OW2 30 2 50S ribosomal protein L44E 2238  
47 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238  
48 1QVG 31 2 50S ribosomal protein L44E 2238  
49 3CME 29 3 50S ribosomal protein L44E 2238  
50 2QEX 30 3 50S ribosomal protein L44e 2238  
51 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238  
52 1N8R 30 4 50S ribosomal protein L44E 2238  
53 1Q81 31 4 50S ribosomal protein L44E 2238  
54 1Q82 31 4 50S ribosomal protein L44E 2238  
55 1QVF 31 2 50S ribosomal protein L44E 2238  
56 1NJI 30 4 50S ribosomal protein L44E 2238  
57 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238  
58 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238  
59 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238  
60 3I55 30 3 50S ribosomal protein L44E 2238  
61 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238  
62 1Q86 31 4 50S ribosomal protein L44E 2238  
63 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238  
64 3G4S 30 3 50S ribosomal protein L44E 2238  
65 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238  
66 2QA4 31 3 50S ribosomal protein L44E 2238  
67 1Q7Y 31 4 50S ribosomal protein L44E 2238  
68 4ADX 4 3 RPL44E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 673
95% 36 68 480
90% 36 68 504
70% 36 68 543
50% 36 123 238
40% 36 123 266
30% 41 360 44
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50112
95% 1 1 35113
90% 1 1 33548
70% 36 68 536
50% 36 121 245
40% 36 121 271
30% 36 121 288
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 444
70% 36 74 478
50% 36 74 531
40% 36 74 570
30% 40 352 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 442
70% 36 74 475
50% 36 76 502
40% 36 76 545
30% 36 78 530
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 482
90% 36 68 507
70% 36 68 546
50% 36 70 589
40% 36 70 626
30% 36 70 628
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1744
95% 36 68 478
90% 36 68 502
70% 36 68 541
50% 36 68 624
40% 36 70 625
30% 36 71 608
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 483
90% 36 68 508
70% 36 68 548
50% 36 70 592
40% 36 70 630
30% 36 71 610
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 476
90% 36 68 500
70% 36 68 539
50% 36 68 621
40% 36 68 653
30% 36 124 276
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 296
95% 36 74 422
90% 36 74 448
70% 36 74 483
50% 36 76 507
40% 36 78 525
30% 40 309 60
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 446
70% 36 74 481
50% 36 130 223
40% 36 130 247
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 317
95% 34 70 462
90% 34 70 484
70% 34 70 519
50% 34 70 594
40% 34 70 632
30% 34 70 631
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 298
95% 36 74 423
90% 36 74 449
70% 36 74 484
50% 36 74 536
40% 36 74 575
30% 36 74 570
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 501
70% 36 68 540
50% 36 68 622
40% 36 70 624
30% 36 71 607
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 485
90% 36 68 510
70% 36 68 550
50% 36 68 627
40% 36 68 658
30% 36 68 656
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53128
95% 3 5 11710
90% 3 5 11520
70% 3 5 10887
50% 3 5 9776
40% 3 5 8924
30% 3 5 7802
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58866
95% 1 1 40994
90% 1 1 39168
70% 3 21 2354
50% 7 30 1594
40% 7 79 410
30% 26 102 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 487
90% 36 68 512
70% 36 68 552
50% 36 69 613
40% 36 69 647
30% 36 69 645
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60169
95% 36 68 488
90% 36 68 513
70% 36 68 553
50% 36 123 239
40% 36 123 267
30% 36 123 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 484
90% 36 68 509
70% 36 68 549
50% 36 68 626
40% 36 68 657
30% 36 122 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 499
70% 36 68 538
50% 36 68 620
40% 36 122 269
30% 41 355 49
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1725
95% 36 68 473
90% 36 68 497
70% 36 68 535
50% 36 121 244
40% 36 123 265
30% 36 123 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44231
95% 36 74 409
90% 36 74 435
70% 36 74 470
50% 36 74 522
40% 36 127 254
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8154
95% 36 74 413
90% 36 74 439
70% 36 74 474
50% 36 74 524
40% 36 76 541
30% 36 77 535
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 443
70% 36 74 476
50% 36 74 529
40% 36 128 250
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1755
95% 3 21 2301
90% 36 68 506
70% 36 68 545
50% 51 95 316
40% 58 105 296
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52139
95% 1 1 36242
90% 1 7 8333
70% 3 27 1729
50% 36 74 530
40% 36 79 512
30% 36 79 522
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 419
90% 36 74 445
70% 36 74 480
50% 36 74 533
40% 37 77 533
30% 37 78 531
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.