Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 755
95 % 36 68 537
90 % 36 68 565
70 % 36 68 616
50 % 36 145 221
40 % 36 145 247
30 % 44 442 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55176
95 % 1 1 38507
90 % 1 1 36690
70 % 36 68 610
50 % 36 140 232
40 % 36 140 260
30 % 36 140 270
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 74 631
40 % 36 74 676
30 % 43 431 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 468
90 % 36 74 496
70 % 36 74 540
50 % 36 76 609
40 % 36 76 652
30 % 36 78 637
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 567
70 % 36 68 618
50 % 36 70 679
40 % 36 70 724
30 % 36 70 729
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1967
95 % 36 68 536
90 % 36 68 564
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 711
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 540
90 % 36 68 570
70 % 36 68 621
50 % 36 70 681
40 % 36 70 726
30 % 36 71 715
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 372
95 % 36 68 534
90 % 36 68 562
70 % 36 68 613
50 % 36 68 703
40 % 36 68 743
30 % 36 144 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 476
90 % 36 74 505
70 % 36 74 551
50 % 36 76 611
40 % 36 78 628
30 % 43 369 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 474
90 % 36 74 503
70 % 36 74 549
50 % 36 149 215
40 % 36 149 240
30 % 36 149 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 346
95 % 34 70 515
90 % 34 70 542
70 % 34 70 591
50 % 34 70 682
40 % 34 70 727
30 % 34 70 730
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 477
90 % 36 74 506
70 % 36 74 552
50 % 36 74 637
40 % 36 74 681
30 % 36 74 679
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 535
90 % 36 68 563
70 % 36 68 614
50 % 36 68 704
40 % 36 70 720
30 % 36 71 710
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 365
95 % 36 68 542
90 % 36 68 572
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 68 751
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58375
95 % 3 5 13020
90 % 3 5 12780
70 % 3 5 12026
50 % 3 5 10766
40 % 3 5 9805
30 % 3 5 8536
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64443
95 % 1 1 44713
90 % 1 1 42589
70 % 3 21 2619
50 % 7 30 1757
40 % 7 98 363
30 % 26 121 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 624
50 % 36 69 694
40 % 36 69 737
30 % 36 69 743
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65795
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 142 226
40 % 36 142 256
30 % 36 142 263
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 571
70 % 36 68 622
50 % 36 68 708
40 % 36 68 747
30 % 36 139 272
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 533
90 % 36 68 561
70 % 36 68 612
50 % 36 68 702
40 % 36 144 248
30 % 44 437 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1945
95 % 36 68 531
90 % 36 68 559
70 % 36 68 609
50 % 36 140 231
40 % 36 142 255
30 % 36 142 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48790
95 % 36 74 461
90 % 36 74 490
70 % 36 74 536
50 % 36 74 622
40 % 36 149 235
30 % 36 149 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9103
95 % 36 74 464
90 % 36 74 493
70 % 36 74 539
50 % 36 74 625
40 % 36 76 651
30 % 36 77 644
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 470
90 % 36 74 498
70 % 36 74 542
50 % 36 74 629
40 % 37 150 233
30 % 37 150 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1976
95 % 3 21 2573
90 % 36 68 566
70 % 36 68 617
50 % 51 98 342
40 % 58 112 311
30 % 58 114 321
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57335
95 % 1 1 39714
90 % 1 7 9264
70 % 3 27 1918
50 % 36 74 630
40 % 36 79 616
30 % 36 79 626
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 472
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 37 77 640
30 % 37 78 640

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 31 3 50S ribosomal protein L44e 2238
2 1VQO 31 3 50S ribosomal protein L44E 2238
3 1VQ8 31 3 50S ribosomal protein L44E 2238
4 1S72 31 3 50S ribosomal protein L44E 2238
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238
6 1YHQ 31 3 50S ribosomal protein L44E 2238
7 1VQP 31 3 50S ribosomal protein L44E 2238
8 1VQM 31 3 50S ribosomal protein L44E 2238
9 3CC2 29 3 50S ribosomal protein L44E 2238
10 1VQL 31 3 50S ribosomal protein L44E 2238
11 1VQK 31 3 50S ribosomal protein L44E 2238
12 1VQN 32 3 50S ribosomal protein L44E 2238
13 1YIJ 31 3 50S ribosomal protein L44E 2238
14 1YI2 31 3 50S ribosomal protein L44E 2238
15 1VQ9 31 3 50S ribosomal protein L44E 2238
16 1VQ7 31 3 50S ribosomal protein L44E 2238
17 3CCM 29 3 50S ribosomal protein L44E 2238
18 1VQ5 31 3 50S ribosomal protein L44E 2238
19 3CCJ 29 3 50S ribosomal protein L44E 2238
20 3CC7 29 3 50S ribosomal protein L44E 2238
21 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238
22 3CCE 29 3 50S ribosomal protein L44E 2238
23 3G6E 30 3 50S ribosomal protein L44E 2238
24 3CPW 30 2 50S ribosomal protein L44E 2238
25 3CCU 29 3 50S ribosomal protein L44E 2238
26 1VQ6 32 3 50S ribosomal protein L44E 2238
27 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238
28 3CCL 29 3 50S ribosomal protein L44E 2238
29 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238
30 1YJ9 31 3 50S ribosomal protein L44E 2238
31 3CD6 29 3 50S ribosomal protein L44E 2238
32 3CCV 29 3 50S ribosomal protein L44E 2238
33 3CC4 29 3 50S ribosomal protein L44E 2238
34 2OTL 30 3 50S ribosomal protein L44E 2238
35 3G71 30 3 50S ribosomal protein L44E 2238
36 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238
37 1VQ4 31 3 50S ribosomal protein L44E 2238
38 1YJN 31 3 50S ribosomal protein L44E 2238
39 3CMA 29 3 50S ribosomal protein L44E 2238
40 3CCS 29 3 50S ribosomal protein L44E 2238
41 3CCQ 29 3 50S ribosomal protein L44E 2238
42 3I56 29 3 50S ribosomal protein L44E 2238
43 3CCR 29 3 50S ribosomal protein L44E 2238
44 2OTJ 30 3 50S ribosomal protein L44E 2238
45 4V88 78 Bo, Do 60S ribosomal protein L42-A 4932
46 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238
47 3OW2 30 2 50S ribosomal protein L44E 2238
48 4U4R 78 Q2, q2 60S ribosomal protein L42-A 4932
49 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238
50 1QVG 31 2 50S ribosomal protein L44E 2238
51 3CME 29 3 50S ribosomal protein L44E 2238
52 2QEX 30 3 50S ribosomal protein L44e 2238
53 4U3U 78 Q2, q2 60S ribosomal protein L42-A 4932
54 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238
55 4U3M 78 Q2, q2 60S ribosomal protein L42-A 4932
56 1N8R 30 4 50S ribosomal protein L44E 2238
57 4U3N 78 Q2, q2 60S ribosomal protein L42-A 4932
58 1Q81 31 4 50S ribosomal protein L44E 2238
59 1Q82 31 4 50S ribosomal protein L44E 2238
60 1QVF 31 2 50S ribosomal protein L44E 2238
61 4U52 78 Q2, q2 60S ribosomal protein L42-A 4932
62 4U4Q 78 Q2, q2 60S ribosomal protein L42-A 4932
63 1NJI 30 4 50S ribosomal protein L44E 2238
64 4U6F 78 Q2, q2 60S ribosomal protein L42-A 4932
65 4U4U 78 Q2, q2 60S ribosomal protein L42-A 4932
66 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238
67 4U4Z 78 Q2, q2 60S ribosomal protein L42-A 4932
68 4U4Y 78 Q2, q2 60S ribosomal protein L42-A 4932
69 4U4N 78 Q2, q2 60S ribosomal protein L42-A 4932
70 4U55 78 Q2, q2 60S ribosomal protein L42-A 4932
71 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238
72 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238
73 3I55 30 3 50S ribosomal protein L44E 2238
74 5I4L 78 Q2, q2 60S ribosomal protein L42-A 4932
75 4U51 78 Q2, q2 60S ribosomal protein L42-A 4932
76 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238
77 4U53 78 Q2, q2 60S ribosomal protein L42-A 4932
78 1Q86 31 4 50S ribosomal protein L44E 2238
79 4U50 78 Q2, q2 60S ribosomal protein L42-A 4932
80 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238
81 3G4S 30 3 50S ribosomal protein L44E 2238
82 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238
83 4U56 78 Q2, q2 60S ribosomal protein L42-A 4932
84 2QA4 31 3 50S ribosomal protein L44E 2238
85 1Q7Y 31 4 50S ribosomal protein L44E 2238
86 5FCJ 78 Q2, q2 60S ribosomal protein L42-A 4932
87 4U4O 78 Q2, q2 60S ribosomal protein L42-A 4932
88 4V8P 4 AC, DC, FC, HC 60S RIBOSOMAL PROTEIN L36A 5911
89 5FCI 78 Q2, q2 60S ribosomal protein L42-A 4932
90 5DC3 78 Q2, q2 60S ribosomal protein L42-A 4932
91 4V7R 61 Bf, Df 60S ribosomal protein L42 4932
92 5IT7 43 oo 60S ribosomal protein L44 28985
93 3JCS 48 n ribosomal protein L44e 5661
94 5GAK 11 C 60S ribosomal protein L42-A 4932
95 5APN 42 o 60S ribosomal protein L42-A 4932
96 5APO 42 o 60S ribosomal protein L42-A 4932
97 3JBN 53 Ai 60S ribosomal protein eL44 5833
98 3JBO 40 Ai 60S ribosomal protein eL44 5833
99 3JBP 53 Ai 60S ribosomal protein eL44 5833
100 3JAN 31 o Ribosomal protein eL42 SEE REMARK 999 9986
101 3JAJ 31 o Ribosomal protein eL42 SEE REMARK 999 9986
102 3JAG 40 o eL42 9986
103 3JAH 40 o eL42 9986
104 3JAI 40 o eL42 9986
105 4UG0 43 Lo 60S RIBOSOMAL PROTEIN L36A 9606
106 5AJ0 43 Ao 60S ribosomal protein L36a 9606
107 3J92 39 o eL42 9986
108 4D67 40 o 60S RIBOSOMAL PROTEIN L36A 9986
109 4D5Y 40 o 60S RIBOSOMAL PROTEIN EL44 9986
110 4V3P 60 Lr 60S ribosomal protein L44 4565
111 3J7O 43 o Ribosomal protein eL42 9823
112 3J7P 44 o Ribosomal protein eL42 9823
113 3J7Q 43 o Ribosomal protein eL42 9823
114 3J7R 43 o Ribosomal protein eL42 9823
115 4UJC 46 Bo 60S RIBOSOMAL PROTEIN L36A 9986
116 4UJD 43 Ao 60S RIBOSOMAL PROTEIN L36A 9986
117 3J79 45 i 60S ribosomal protein eL44 5833
118 3J77 42 92 60S ribosomal protein L42 4932
119 3J78 42 92 60S ribosomal protein L42 4932
120 3J6X 44 82 60S ribosomal protein L42 4932
121 3J6Y 44 82 60S ribosomal protein L42 4932
122 4UJE 77 Co 60S RIBOSOMAL PROTEIN L36A 9986
123 4V91 43 o EL42 RIBOSOMAL PROTEIN EL42 28985
124 4V7E 60 Co 60S ribosomal protein L44E 4565
125 4V8Y 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
126 4V8Z 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
127 4V4N 57 Aj 50S ribosomal protein L44E SEE REMARK 999 2190
128 4V6W 78 Co 60S ribosomal protein L36A 7227
129 4V6X 78 Co 60S ribosomal protein L36a 9606
130 4V8M 79 Bt 60S RIBOSOMAL PROTEIN L44 185431
131 4V6U 51 Bj 50S ribosomal protein L44E 2261
132 4V8T 41 o 60S RIBOSOMAL PROTEIN L42-A 4932
133 4ADX 4 3 RPL44E 145262
134 3J0O 24 F Ribosomal protein L36a 9986
135 3J0L 26 F Ribosomal protein L36a 9986
136 4V6I 69 Br 60S ribosomal protein rpL42 (L44e) 4932
137 4V7H 50 BZ 60S ribosomal protein L42 5541
138 4V5Z 84 B4 60S Ribosomal protein L44e 9612
139 4V4B 46 BZ 60S ribosomal protein L42 4932