Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 714
95 % 36 68 509
90 % 36 68 538
70 % 36 68 588
50 % 36 137 223
40 % 36 137 250
30 % 42 407 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52834
95 % 1 1 36927
90 % 1 1 35202
70 % 36 68 580
50 % 36 132 237
40 % 36 132 263
30 % 36 132 278
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 301
95 % 36 74 443
90 % 36 74 466
70 % 36 74 509
50 % 36 74 589
40 % 36 74 633
30 % 41 396 45
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 299
95 % 36 74 440
90 % 36 74 464
70 % 36 74 506
50 % 36 76 564
40 % 36 76 608
30 % 36 78 581
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 346
95 % 36 68 511
90 % 36 68 541
70 % 36 68 591
50 % 36 70 648
40 % 36 70 688
30 % 36 70 690
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1848
95 % 36 68 507
90 % 36 68 536
70 % 36 68 586
50 % 36 68 684
40 % 36 70 685
30 % 36 71 671
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 347
95 % 36 68 512
90 % 36 68 542
70 % 36 68 592
50 % 36 70 649
40 % 36 70 690
30 % 36 71 674
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 356
95 % 36 68 505
90 % 36 68 534
70 % 36 68 584
50 % 36 68 681
40 % 36 68 714
30 % 36 136 267
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 448
90 % 36 74 471
70 % 36 74 517
50 % 36 76 568
40 % 36 78 583
30 % 41 342 53
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 304
95 % 36 74 446
90 % 36 74 469
70 % 36 74 514
50 % 36 141 219
40 % 36 141 248
30 % 36 141 260
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 331
95 % 34 70 487
90 % 34 70 514
70 % 34 70 563
50 % 34 70 651
40 % 34 70 691
30 % 34 70 691
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 449
90 % 36 74 472
70 % 36 74 518
50 % 36 74 596
40 % 36 74 640
30 % 36 74 635
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 344
95 % 36 68 506
90 % 36 68 535
70 % 36 68 585
50 % 36 68 682
40 % 36 70 684
30 % 36 71 670
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 349
95 % 36 68 514
90 % 36 68 544
70 % 36 68 594
50 % 36 68 688
40 % 36 68 718
30 % 36 68 719
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55929
95 % 3 5 12400
90 % 3 5 12166
70 % 3 5 11473
50 % 3 5 10284
40 % 3 5 9380
30 % 3 5 8184
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61819
95 % 1 1 42933
90 % 1 1 40943
70 % 3 21 2498
50 % 7 30 1686
40 % 7 90 384
30 % 26 113 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 516
90 % 36 68 546
70 % 36 68 596
50 % 36 69 670
40 % 36 69 705
30 % 36 69 706
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 36 68 517
90 % 36 68 547
70 % 36 68 597
50 % 36 134 230
40 % 36 134 258
30 % 36 134 274
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 348
95 % 36 68 513
90 % 36 68 543
70 % 36 68 593
50 % 36 68 687
40 % 36 68 717
30 % 36 132 281
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 343
95 % 36 68 504
90 % 36 68 533
70 % 36 68 583
50 % 36 68 680
40 % 36 136 253
30 % 42 402 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1825
95 % 36 68 501
90 % 36 68 530
70 % 36 68 579
50 % 36 132 236
40 % 36 134 256
30 % 36 134 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46681
95 % 36 74 432
90 % 36 74 457
70 % 36 74 502
50 % 36 74 580
40 % 36 141 244
30 % 36 141 257
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8647
95 % 36 74 436
90 % 36 74 461
70 % 36 74 505
50 % 36 74 583
40 % 36 76 605
30 % 36 77 592
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 300
95 % 36 74 442
90 % 36 74 465
70 % 36 74 507
50 % 36 74 587
40 % 37 141 247
30 % 37 141 259
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1861
95 % 3 21 2439
90 % 36 68 540
70 % 36 68 590
50 % 51 95 340
40 % 58 107 308
30 % 58 109 317
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54920
95 % 1 1 38086
90 % 1 7 8809
70 % 3 27 1833
50 % 36 74 588
40 % 36 79 570
30 % 36 79 573
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 302
95 % 36 74 444
90 % 36 74 467
70 % 36 74 512
50 % 36 74 592
40 % 37 77 595
30 % 37 78 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 31 3 50S ribosomal protein L44e 2238
2 1VQO 31 3 50S ribosomal protein L44E 2238
3 1VQ8 31 3 50S ribosomal protein L44E 2238
4 1S72 31 3 50S ribosomal protein L44E 2238
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238
6 1YHQ 31 3 50S ribosomal protein L44E 2238
7 1VQP 31 3 50S ribosomal protein L44E 2238
8 1VQM 31 3 50S ribosomal protein L44E 2238
9 3CC2 29 3 50S ribosomal protein L44E 2238
10 1VQL 31 3 50S ribosomal protein L44E 2238
11 1VQK 31 3 50S ribosomal protein L44E 2238
12 1VQN 32 3 50S ribosomal protein L44E 2238
13 1YIJ 31 3 50S ribosomal protein L44E 2238
14 1YI2 31 3 50S ribosomal protein L44E 2238
15 1VQ9 31 3 50S ribosomal protein L44E 2238
16 1VQ7 31 3 50S ribosomal protein L44E 2238
17 3CCM 29 3 50S ribosomal protein L44E 2238
18 1VQ5 31 3 50S ribosomal protein L44E 2238
19 3CCJ 29 3 50S ribosomal protein L44E 2238
20 3CC7 29 3 50S ribosomal protein L44E 2238
21 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238
22 3CCE 29 3 50S ribosomal protein L44E 2238
23 3G6E 30 3 50S ribosomal protein L44E 2238
24 3CPW 30 2 50S ribosomal protein L44E 2238
25 3CCU 29 3 50S ribosomal protein L44E 2238
26 1VQ6 32 3 50S ribosomal protein L44E 2238
27 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238
28 3CCL 29 3 50S ribosomal protein L44E 2238
29 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238
30 1YJ9 31 3 50S ribosomal protein L44E 2238
31 3CD6 29 3 50S ribosomal protein L44E 2238
32 3CCV 29 3 50S ribosomal protein L44E 2238
33 3CC4 29 3 50S ribosomal protein L44E 2238
34 2OTL 30 3 50S ribosomal protein L44E 2238
35 3G71 30 3 50S ribosomal protein L44E 2238
36 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238
37 1VQ4 31 3 50S ribosomal protein L44E 2238
38 1YJN 31 3 50S ribosomal protein L44E 2238
39 3CMA 29 3 50S ribosomal protein L44E 2238
40 3CCS 29 3 50S ribosomal protein L44E 2238
41 3CCQ 29 3 50S ribosomal protein L44E 2238
42 3I56 29 3 50S ribosomal protein L44E 2238
43 3CCR 29 3 50S ribosomal protein L44E 2238
44 2OTJ 30 3 50S ribosomal protein L44E 2238
45 4V88 78 Bo, Do 60S ribosomal protein L42-A 4932
46 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238
47 3OW2 30 2 50S ribosomal protein L44E 2238
48 4U4R 78 Q2, q2 60S ribosomal protein L42-A 4932
49 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238
50 1QVG 31 2 50S ribosomal protein L44E 2238
51 3CME 29 3 50S ribosomal protein L44E 2238
52 2QEX 30 3 50S ribosomal protein L44e 2238
53 4U3U 78 Q2, q2 60S ribosomal protein L42-A 4932
54 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238
55 4U3M 78 Q2, q2 60S ribosomal protein L42-A 4932
56 1N8R 30 4 50S ribosomal protein L44E 2238
57 4U3N 78 Q2, q2 60S ribosomal protein L42-A 4932
58 1Q81 31 4 50S ribosomal protein L44E 2238
59 1Q82 31 4 50S ribosomal protein L44E 2238
60 1QVF 31 2 50S ribosomal protein L44E 2238
61 4U52 78 Q2, q2 60S ribosomal protein L42-A 4932
62 4U4Q 78 Q2, q2 60S ribosomal protein L42-A 4932
63 1NJI 30 4 50S ribosomal protein L44E 2238
64 4U6F 78 Q2, q2 60S ribosomal protein L42-A 4932
65 4U4U 78 Q2, q2 60S ribosomal protein L42-A 4932
66 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238
67 4U4Z 78 Q2, q2 60S ribosomal protein L42-A 4932
68 4U4Y 78 Q2, q2 60S ribosomal protein L42-A 4932
69 4U4N 78 Q2, q2 60S ribosomal protein L42-A 4932
70 4U55 78 Q2, q2 60S ribosomal protein L42-A 4932
71 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238
72 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238
73 3I55 30 3 50S ribosomal protein L44E 2238
74 4U51 78 Q2, q2 60S ribosomal protein L42-A 4932
75 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238
76 4U53 78 Q2, q2 60S ribosomal protein L42-A 4932
77 1Q86 31 4 50S ribosomal protein L44E 2238
78 4U50 78 Q2, q2 60S ribosomal protein L42-A 4932
79 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238
80 3G4S 30 3 50S ribosomal protein L44E 2238
81 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238
82 4U56 78 Q2, q2 60S ribosomal protein L42-A 4932
83 2QA4 31 3 50S ribosomal protein L44E 2238
84 1Q7Y 31 4 50S ribosomal protein L44E 2238
85 4U4O 78 Q2, q2 60S ribosomal protein L42-A 4932
86 4V8P 4 AC, DC, FC, HC 60S RIBOSOMAL PROTEIN L36A 5911
87 4V7R 61 Bf, Df 60S ribosomal protein L42 4932
88 5APN 42 o 60S ribosomal protein L42-A 4932
89 5APO 42 o 60S ribosomal protein L42-A 4932
90 3JBN 53 Ai 60S ribosomal protein eL44 5833
91 3JBO 40 Ai 60S ribosomal protein eL44 5833
92 3JBP 53 Ai 60S ribosomal protein eL44 5833
93 3JAN 31 o Ribosomal protein eL42 SEE REMARK 999 9986
94 3JAJ 31 o Ribosomal protein eL42 SEE REMARK 999 9986
95 3JAG 40 o eL42 9986
96 3JAH 40 o eL42 9986
97 3JAI 40 o eL42 9986
98 4UG0 43 Lo 60S RIBOSOMAL PROTEIN L36A 9606
99 5AJ0 43 Ao 60S ribosomal protein L36a 9606
100 3J92 39 o eL42 9986
101 4D67 40 o 60S RIBOSOMAL PROTEIN L36A 9986
102 4D5Y 40 o 60S RIBOSOMAL PROTEIN EL44 9986
103 4V3P 60 Lr 60S ribosomal protein L44 4565
104 3J7O 43 o Ribosomal protein eL42 9823
105 3J7P 44 o Ribosomal protein eL42 9823
106 3J7Q 43 o Ribosomal protein eL42 9823
107 3J7R 43 o Ribosomal protein eL42 9823
108 4UJC 46 Bo 60S RIBOSOMAL PROTEIN L36A 9986
109 4UJD 43 Ao 60S RIBOSOMAL PROTEIN L36A 9986
110 3J79 45 i 60S ribosomal protein eL44 5833
111 3J77 42 92 60S ribosomal protein L42 4932
112 3J78 42 92 60S ribosomal protein L42 4932
113 3J6X 44 82 60S ribosomal protein L42 4932
114 3J6Y 44 82 60S ribosomal protein L42 4932
115 4UJE 77 Co 60S RIBOSOMAL PROTEIN L36A 9986
116 4V91 43 o EL42 RIBOSOMAL PROTEIN EL42 28985
117 4V7E 60 Co 60S ribosomal protein L44E 4565
118 4V8Y 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
119 4V8Z 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
120 4V4N 57 Aj 50S ribosomal protein L44E SEE REMARK 999 2190
121 4V6W 78 Co 60S ribosomal protein L36A 7227
122 4V6X 78 Co 60S ribosomal protein L36a 9606
123 4V8M 79 Bt 60S RIBOSOMAL PROTEIN L44 185431
124 4V6U 51 Bj 50S ribosomal protein L44E 2261
125 4V8T 41 o 60S RIBOSOMAL PROTEIN L42-A 4932
126 4ADX 4 3 RPL44E 145262
127 3J0O 24 F Ribosomal protein L36a 9986
128 3J0L 26 F Ribosomal protein L36a 9986
129 4V6I 69 Br 60S ribosomal protein rpL42 (L44e) 4932
130 4V7H 50 BZ 60S ribosomal protein L42 5541
131 4V5Z 84 B4 60S Ribosomal protein L44e 9612
132 4V4B 46 BZ 60S ribosomal protein L42 4932