Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 231
40 % 36 138 258
30 % 43 417 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53956
95 % 1 1 37687
90 % 1 1 35923
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 457
90 % 36 74 483
70 % 36 74 526
50 % 36 74 603
40 % 36 74 652
30 % 42 406 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 455
90 % 36 74 481
70 % 36 74 523
50 % 36 76 579
40 % 36 76 624
30 % 36 78 599
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 706
30 % 36 70 707
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1903
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 703
30 % 36 71 687
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 708
30 % 36 71 690
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 725
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 76 581
40 % 36 78 597
30 % 42 351 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 460
90 % 36 74 486
70 % 36 74 531
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 709
30 % 34 70 709
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 463
90 % 36 74 489
70 % 36 74 534
50 % 36 74 610
40 % 36 74 659
30 % 36 74 650
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 702
30 % 36 71 686
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 728
30 % 36 68 729
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57082
95 % 3 5 12676
90 % 3 5 12439
70 % 3 5 11713
50 % 3 5 10502
40 % 3 5 9582
30 % 3 5 8353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63043
95 % 1 1 43760
90 % 1 1 41723
70 % 3 21 2551
50 % 7 30 1716
40 % 7 91 390
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 720
30 % 36 69 723
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64384
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 727
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 412 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1881
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47698
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8845
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 622
30 % 36 77 610
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1915
95 % 3 21 2493
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56064
95 % 1 1 38858
90 % 1 7 9001
70 % 3 27 1871
50 % 36 74 602
40 % 36 79 583
30 % 36 79 589
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 458
90 % 36 74 484
70 % 36 74 529
50 % 36 74 607
40 % 37 77 609
30 % 37 78 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 31 3 50S ribosomal protein L44e 2238
2 1VQO 31 3 50S ribosomal protein L44E 2238
3 1VQ8 31 3 50S ribosomal protein L44E 2238
4 1S72 31 3 50S ribosomal protein L44E 2238
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238
6 1YHQ 31 3 50S ribosomal protein L44E 2238
7 1VQP 31 3 50S ribosomal protein L44E 2238
8 1VQM 31 3 50S ribosomal protein L44E 2238
9 3CC2 29 3 50S ribosomal protein L44E 2238
10 1VQL 31 3 50S ribosomal protein L44E 2238
11 1VQK 31 3 50S ribosomal protein L44E 2238
12 1VQN 32 3 50S ribosomal protein L44E 2238
13 1YIJ 31 3 50S ribosomal protein L44E 2238
14 1YI2 31 3 50S ribosomal protein L44E 2238
15 1VQ9 31 3 50S ribosomal protein L44E 2238
16 1VQ7 31 3 50S ribosomal protein L44E 2238
17 3CCM 29 3 50S ribosomal protein L44E 2238
18 1VQ5 31 3 50S ribosomal protein L44E 2238
19 3CCJ 29 3 50S ribosomal protein L44E 2238
20 3CC7 29 3 50S ribosomal protein L44E 2238
21 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238
22 3CCE 29 3 50S ribosomal protein L44E 2238
23 3G6E 30 3 50S ribosomal protein L44E 2238
24 3CPW 30 2 50S ribosomal protein L44E 2238
25 3CCU 29 3 50S ribosomal protein L44E 2238
26 1VQ6 32 3 50S ribosomal protein L44E 2238
27 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238
28 3CCL 29 3 50S ribosomal protein L44E 2238
29 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238
30 1YJ9 31 3 50S ribosomal protein L44E 2238
31 3CD6 29 3 50S ribosomal protein L44E 2238
32 3CCV 29 3 50S ribosomal protein L44E 2238
33 3CC4 29 3 50S ribosomal protein L44E 2238
34 2OTL 30 3 50S ribosomal protein L44E 2238
35 3G71 30 3 50S ribosomal protein L44E 2238
36 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238
37 1VQ4 31 3 50S ribosomal protein L44E 2238
38 1YJN 31 3 50S ribosomal protein L44E 2238
39 3CMA 29 3 50S ribosomal protein L44E 2238
40 3CCS 29 3 50S ribosomal protein L44E 2238
41 3CCQ 29 3 50S ribosomal protein L44E 2238
42 3I56 29 3 50S ribosomal protein L44E 2238
43 3CCR 29 3 50S ribosomal protein L44E 2238
44 2OTJ 30 3 50S ribosomal protein L44E 2238
45 4V88 78 Bo, Do 60S ribosomal protein L42-A 4932
46 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238
47 3OW2 30 2 50S ribosomal protein L44E 2238
48 4U4R 78 Q2, q2 60S ribosomal protein L42-A 4932
49 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238
50 1QVG 31 2 50S ribosomal protein L44E 2238
51 3CME 29 3 50S ribosomal protein L44E 2238
52 2QEX 30 3 50S ribosomal protein L44e 2238
53 4U3U 78 Q2, q2 60S ribosomal protein L42-A 4932
54 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238
55 4U3M 78 Q2, q2 60S ribosomal protein L42-A 4932
56 1N8R 30 4 50S ribosomal protein L44E 2238
57 4U3N 78 Q2, q2 60S ribosomal protein L42-A 4932
58 1Q81 31 4 50S ribosomal protein L44E 2238
59 1Q82 31 4 50S ribosomal protein L44E 2238
60 1QVF 31 2 50S ribosomal protein L44E 2238
61 4U52 78 Q2, q2 60S ribosomal protein L42-A 4932
62 4U4Q 78 Q2, q2 60S ribosomal protein L42-A 4932
63 1NJI 30 4 50S ribosomal protein L44E 2238
64 4U6F 78 Q2, q2 60S ribosomal protein L42-A 4932
65 4U4U 78 Q2, q2 60S ribosomal protein L42-A 4932
66 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238
67 4U4Z 78 Q2, q2 60S ribosomal protein L42-A 4932
68 4U4Y 78 Q2, q2 60S ribosomal protein L42-A 4932
69 4U4N 78 Q2, q2 60S ribosomal protein L42-A 4932
70 4U55 78 Q2, q2 60S ribosomal protein L42-A 4932
71 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238
72 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238
73 3I55 30 3 50S ribosomal protein L44E 2238
74 4U51 78 Q2, q2 60S ribosomal protein L42-A 4932
75 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238
76 4U53 78 Q2, q2 60S ribosomal protein L42-A 4932
77 1Q86 31 4 50S ribosomal protein L44E 2238
78 4U50 78 Q2, q2 60S ribosomal protein L42-A 4932
79 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238
80 3G4S 30 3 50S ribosomal protein L44E 2238
81 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238
82 4U56 78 Q2, q2 60S ribosomal protein L42-A 4932
83 2QA4 31 3 50S ribosomal protein L44E 2238
84 1Q7Y 31 4 50S ribosomal protein L44E 2238
85 4U4O 78 Q2, q2 60S ribosomal protein L42-A 4932
86 4V8P 4 AC, DC, FC, HC 60S RIBOSOMAL PROTEIN L36A 5911
87 4V7R 61 Bf, Df 60S ribosomal protein L42 4932
88 5GAK 11 C 60S ribosomal protein L42-A 4932
89 5APN 42 o 60S ribosomal protein L42-A 4932
90 5APO 42 o 60S ribosomal protein L42-A 4932
91 3JBN 53 Ai 60S ribosomal protein eL44 5833
92 3JBO 40 Ai 60S ribosomal protein eL44 5833
93 3JBP 53 Ai 60S ribosomal protein eL44 5833
94 3JAN 31 o Ribosomal protein eL42 SEE REMARK 999 9986
95 3JAJ 31 o Ribosomal protein eL42 SEE REMARK 999 9986
96 3JAG 40 o eL42 9986
97 3JAH 40 o eL42 9986
98 3JAI 40 o eL42 9986
99 4UG0 43 Lo 60S RIBOSOMAL PROTEIN L36A 9606
100 5AJ0 43 Ao 60S ribosomal protein L36a 9606
101 3J92 39 o eL42 9986
102 4D67 40 o 60S RIBOSOMAL PROTEIN L36A 9986
103 4D5Y 40 o 60S RIBOSOMAL PROTEIN EL44 9986
104 4V3P 60 Lr 60S ribosomal protein L44 4565
105 3J7O 43 o Ribosomal protein eL42 9823
106 3J7P 44 o Ribosomal protein eL42 9823
107 3J7Q 43 o Ribosomal protein eL42 9823
108 3J7R 43 o Ribosomal protein eL42 9823
109 4UJC 46 Bo 60S RIBOSOMAL PROTEIN L36A 9986
110 4UJD 43 Ao 60S RIBOSOMAL PROTEIN L36A 9986
111 3J79 45 i 60S ribosomal protein eL44 5833
112 3J77 42 92 60S ribosomal protein L42 4932
113 3J78 42 92 60S ribosomal protein L42 4932
114 3J6X 44 82 60S ribosomal protein L42 4932
115 3J6Y 44 82 60S ribosomal protein L42 4932
116 4UJE 77 Co 60S RIBOSOMAL PROTEIN L36A 9986
117 4V91 43 o EL42 RIBOSOMAL PROTEIN EL42 28985
118 4V7E 60 Co 60S ribosomal protein L44E 4565
119 4V8Y 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
120 4V8Z 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932
121 4V4N 57 Aj 50S ribosomal protein L44E SEE REMARK 999 2190
122 4V6W 78 Co 60S ribosomal protein L36A 7227
123 4V6X 78 Co 60S ribosomal protein L36a 9606
124 4V8M 79 Bt 60S RIBOSOMAL PROTEIN L44 185431
125 4V6U 51 Bj 50S ribosomal protein L44E 2261
126 4V8T 41 o 60S RIBOSOMAL PROTEIN L42-A 4932
127 4ADX 4 3 RPL44E 145262
128 3J0O 24 F Ribosomal protein L36a 9986
129 3J0L 26 F Ribosomal protein L36a 9986
130 4V6I 69 Br 60S ribosomal protein rpL42 (L44e) 4932
131 4V7H 50 BZ 60S ribosomal protein L42 5541
132 4V5Z 84 B4 60S Ribosomal protein L44e 9612
133 4V4B 46 BZ 60S ribosomal protein L42 4932