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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 275 Members. Sequence cutoff: 30% Cluster size: 127 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 31 3 50S ribosomal protein L44e 272569  
2 1VQO 31 3 50S ribosomal protein L44E 2238  
3 1VQ8 31 3 50S ribosomal protein L44E 2238  
4 1S72 31 3 50S ribosomal protein L44E 2238  
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238  
6 1YHQ 31 3 50S ribosomal protein L44E 2238  
7 1VQP 31 3 50S ribosomal protein L44E 2238  
8 1VQM 31 3 50S ribosomal protein L44E 2238  
9 3CC2 29 3 50S ribosomal protein L44E 2238  
10 1VQL 31 3 50S ribosomal protein L44E 2238  
11 1VQK 31 3 50S ribosomal protein L44E 2238  
12 1VQN 32 3 50S ribosomal protein L44E 2238  
13 1YIJ 31 3 50S ribosomal protein L44E 2238  
14 1YI2 31 3 50S ribosomal protein L44E 2238  
15 1VQ9 31 3 50S ribosomal protein L44E 2238  
16 1VQ7 31 3 50S ribosomal protein L44E 2238  
17 3CCM 29 3 50S ribosomal protein L44E 2238  
18 1VQ5 31 3 50S ribosomal protein L44E 2238  
19 3CCJ 29 3 50S ribosomal protein L44E 2238  
20 3CC7 29 3 50S ribosomal protein L44E 2238  
21 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238  
22 3CCE 29 3 50S ribosomal protein L44E 2238  
23 3G6E 30 3 50S ribosomal protein L44E 2238  
24 3CPW 30 2 50S ribosomal protein L44E 2238  
25 3CCU 29 3 50S ribosomal protein L44E 2238  
26 1VQ6 32 3 50S ribosomal protein L44E 2238  
27 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238  
28 3CCL 29 3 50S ribosomal protein L44E 2238  
29 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238  
30 1YJ9 31 3 50S ribosomal protein L44E 2238  
31 3CD6 29 3 50S ribosomal protein L44E 2238  
32 3CCV 29 3 50S ribosomal protein L44E 2238  
33 3CC4 29 3 50S ribosomal protein L44E 2238  
34 2OTL 30 3 50S ribosomal protein L44E 2238  
35 3G71 30 3 50S ribosomal protein L44E 2238  
36 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238  
37 1VQ4 31 3 50S ribosomal protein L44E 2238  
38 1YJN 31 3 50S ribosomal protein L44E 2238  
39 3CMA 29 3 50S ribosomal protein L44E 2238  
40 3CCS 29 3 50S ribosomal protein L44E 2238  
41 3CCQ 29 3 50S ribosomal protein L44E 2238  
42 3I56 29 3 50S ribosomal protein L44E 2238  
43 3CCR 29 3 50S ribosomal protein L44E 2238  
44 2OTJ 30 3 50S ribosomal protein L44E 2238  
45 4V88 78 Bo, Do 60S ribosomal protein L42-A 559292  
46 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238  
47 3OW2 30 2 50S ribosomal protein L44E 2238  
48 4U4R 78 Q2, q2 60S ribosomal protein L42-A 559292  
49 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238  
50 1QVG 31 2 50S ribosomal protein L44E 2238  
51 3CME 29 3 50S ribosomal protein L44E 2238  
52 2QEX 30 3 50S ribosomal protein L44e 2238  
53 4U3U 78 Q2, q2 60S ribosomal protein L42-A 559292  
54 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238  
55 4U3M 78 Q2, q2 60S ribosomal protein L42-A 559292  
56 1N8R 30 4 50S ribosomal protein L44E 2238  
57 4U3N 78 Q2, q2 60S ribosomal protein L42-A 559292  
58 1Q81 31 4 50S ribosomal protein L44E 2238  
59 1Q82 31 4 50S ribosomal protein L44E 2238  
60 1QVF 31 2 50S ribosomal protein L44E 2238  
61 4U52 78 Q2, q2 60S ribosomal protein L42-A 559292  
62 4U4Q 78 Q2, q2 60S ribosomal protein L42-A 559292  
63 1NJI 30 4 50S ribosomal protein L44E 2238  
64 4U6F 78 Q2, q2 60S ribosomal protein L42-A 559292  
65 4U4U 78 Q2, q2 60S ribosomal protein L42-A 559292  
66 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238  
67 4U4Z 78 Q2, q2 60S ribosomal protein L42-A 559292  
68 4U4Y 78 Q2, q2 60S ribosomal protein L42-A 559292  
69 4U4N 78 Q2, q2 60S ribosomal protein L42-A 559292  
70 4U55 78 Q2, q2 60S ribosomal protein L42-A 559292  
71 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238  
72 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238  
73 3I55 30 3 50S ribosomal protein L44E 2238  
74 4U51 78 Q2, q2 60S ribosomal protein L42-A 559292  
75 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238  
76 4U53 78 Q2, q2 60S ribosomal protein L42-A 559292  
77 1Q86 31 4 50S ribosomal protein L44E 2238  
78 4U50 78 Q2, q2 60S ribosomal protein L42-A 559292  
79 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238  
80 3G4S 30 3 50S ribosomal protein L44E 2238  
81 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238  
82 4U56 78 Q2, q2 60S ribosomal protein L42-A 559292  
83 2QA4 31 3 50S ribosomal protein L44E 2238  
84 1Q7Y 31 4 50S ribosomal protein L44E 2238  
85 4U4O 78 Q2, q2 60S ribosomal protein L42-A 559292  
86 4V8P 4 AC, DC, FC, HC 60S RIBOSOMAL PROTEIN L36A 5911  
87 4V7R 61 Bf, Df 60S ribosomal protein L42 4932  
88 3JAN 31 o Ribosomal protein eL42 SEE REMARK 999 9986  
89 3JAJ 31 o Ribosomal protein eL42 SEE REMARK 999 9986  
90 3JAG 40 o eL42 9986  
91 3JAH 40 o eL42 9986  
92 3JAI 40 o eL42 9986  
93 4UG0 43 Lo 60S RIBOSOMAL PROTEIN L36A 9606  
94 5AJ0 43 Ao 60S ribosomal protein L36a 9606  
95 3J92 39 o eL42 9986  
96 4D67 40 o 60S RIBOSOMAL PROTEIN L36A 9986  
97 4D5Y 40 o 60S RIBOSOMAL PROTEIN EL44 9986  
98 4V3P 60 Lr 60S ribosomal protein L44 4565  
99 3J7O 43 o Ribosomal protein eL42 9823  
100 3J7P 44 o Ribosomal protein eL42 9823  
101 3J7Q 43 o Ribosomal protein eL42 9823  
102 3J7R 43 o Ribosomal protein eL42 9823  
103 4UJC 46 Bo 60S RIBOSOMAL PROTEIN L36A 9986  
104 4UJD 43 Ao 60S RIBOSOMAL PROTEIN L36A 9986  
105 3J79 45 i 60S ribosomal protein eL44 36329  
106 3J77 42 92 60S ribosomal protein L42 4932  
107 3J78 42 92 60S ribosomal protein L42 4932  
108 3J6X 44 82 60S ribosomal protein L42 580240  
109 3J6Y 44 82 60S ribosomal protein L42 580240  
110 4UJE 77 Co 60S RIBOSOMAL PROTEIN L36A 9986  
111 4V91 43 o EL42 RIBOSOMAL PROTEIN EL42 28985  
112 4V7E 60 Co 60S ribosomal protein L44E 4565  
113 4V8Y 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932  
114 4V8Z 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932  
115 4V4N 57 Aj 50S ribosomal protein L44E SEE REMARK 999 2190  
116 4V6W 78 Co 60S ribosomal protein L36A 7227  
117 4V6X 78 Co 60S ribosomal protein L36a 9606  
118 4V8M 79 Bt 60S RIBOSOMAL PROTEIN L44 185431  
119 4V6U 51 Bj 50S ribosomal protein L44E 186497  
120 4V8T 41 o 60S RIBOSOMAL PROTEIN L42-A 559292  
121 4ADX 4 3 RPL44E 187420  
122 3J0O 24 F Ribosomal protein L36a 9986  
123 3J0L 26 F Ribosomal protein L36a 9986  
124 4V6I 69 Br 60S ribosomal protein rpL42 (L44e) 4932  
125 4V7H 50 BZ 60S ribosomal protein L42 5541  
126 4V5Z 84 B4 60S Ribosomal protein L44e 9615  
127 4V4B 46 BZ 60S ribosomal protein L42 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 685
95% 36 68 488
90% 36 68 511
70% 36 68 562
50% 36 128 228
40% 36 128 257
30% 41 366 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50769
95% 1 1 35558
90% 1 1 33951
70% 36 68 555
50% 36 126 236
40% 36 126 264
30% 36 126 279
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 426
90% 36 74 452
70% 36 74 488
50% 36 74 557
40% 36 74 597
30% 40 358 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 423
90% 36 74 450
70% 36 74 485
50% 36 76 534
40% 36 76 575
30% 36 78 553
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 490
90% 36 68 514
70% 36 68 565
50% 36 70 612
40% 36 70 649
30% 36 70 646
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1773
95% 36 68 486
90% 36 68 509
70% 36 68 560
50% 36 68 644
40% 36 70 646
30% 36 71 628
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 491
90% 36 68 515
70% 36 68 566
50% 36 70 614
40% 36 70 652
30% 36 71 630
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 343
95% 36 68 484
90% 36 68 507
70% 36 68 558
50% 36 68 641
40% 36 68 674
30% 36 129 268
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 431
90% 36 74 457
70% 36 74 494
50% 36 76 538
40% 36 78 550
30% 40 310 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 429
90% 36 74 455
70% 36 74 492
50% 36 135 218
40% 36 135 242
30% 36 135 256
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 319
95% 34 70 466
90% 34 70 489
70% 34 70 538
50% 34 70 615
40% 34 70 653
30% 34 70 648
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 301
95% 36 74 432
90% 36 74 458
70% 36 74 495
50% 36 74 564
40% 36 74 602
30% 36 74 597
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 508
70% 36 68 559
50% 36 68 642
40% 36 70 645
30% 36 71 627
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 493
90% 36 68 517
70% 36 68 568
50% 36 68 648
40% 36 68 678
30% 36 68 675
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53805
95% 3 5 11926
90% 3 5 11715
70% 3 5 11053
50% 3 5 9921
40% 3 5 9066
30% 3 5 7916
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59582
95% 1 1 41472
90% 1 1 39607
70% 3 21 2383
50% 7 30 1612
40% 7 84 399
30% 26 107 328
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 336
95% 36 68 495
90% 36 68 519
70% 36 68 570
50% 36 69 632
40% 36 69 669
30% 36 69 665
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60890
95% 36 68 496
90% 36 68 520
70% 36 68 571
50% 36 128 229
40% 36 128 258
30% 36 128 271
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 492
90% 36 68 516
70% 36 68 567
50% 36 68 647
40% 36 68 677
30% 36 127 275
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 483
90% 36 68 506
70% 36 68 557
50% 36 68 640
40% 36 127 261
30% 41 361 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1752
95% 36 68 480
90% 36 68 503
70% 36 68 554
50% 36 126 235
40% 36 128 255
30% 36 128 270
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44841
95% 36 74 416
90% 36 74 443
70% 36 74 481
50% 36 74 550
40% 36 132 248
30% 36 132 261
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8281
95% 36 74 420
90% 36 74 447
70% 36 74 484
50% 36 74 552
40% 36 76 571
30% 36 77 561
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 425
90% 36 74 451
70% 36 74 486
50% 36 74 555
40% 37 134 244
30% 37 134 258
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1784
95% 3 21 2327
90% 36 68 513
70% 36 68 564
50% 51 95 327
40% 58 105 302
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52810
95% 1 1 36695
90% 1 7 8464
70% 3 27 1754
50% 36 74 556
40% 36 79 537
30% 36 79 544
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 427
90% 36 74 453
70% 36 74 491
50% 36 74 560
40% 37 77 561
30% 37 78 556
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.