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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 290 Members. Sequence cutoff: 30% Cluster size: 116 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 31 3 50S ribosomal protein L44e 272569  
2 1VQO 31 3 50S ribosomal protein L44E 2238  
3 1VQ8 31 3 50S ribosomal protein L44E 2238  
4 1S72 31 3 50S ribosomal protein L44E 2238  
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238  
6 1YHQ 31 3 50S ribosomal protein L44E 2238  
7 1VQP 31 3 50S ribosomal protein L44E 2238  
8 1VQM 31 3 50S ribosomal protein L44E 2238  
9 3CC2 29 3 50S ribosomal protein L44E 2238  
10 1VQL 31 3 50S ribosomal protein L44E 2238  
11 1VQK 31 3 50S ribosomal protein L44E 2238  
12 1VQN 32 3 50S ribosomal protein L44E 2238  
13 1YIJ 31 3 50S ribosomal protein L44E 2238  
14 1YI2 31 3 50S ribosomal protein L44E 2238  
15 1VQ9 31 3 50S ribosomal protein L44E 2238  
16 1VQ7 31 3 50S ribosomal protein L44E 2238  
17 3CCM 29 3 50S ribosomal protein L44E 272569  
18 1VQ5 31 3 50S ribosomal protein L44E 2238  
19 3CCJ 29 3 50S ribosomal protein L44E 272569  
20 3CC7 29 3 50S ribosomal protein L44E 2238  
21 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238  
22 3CCE 29 3 50S ribosomal protein L44E 272569  
23 3G6E 30 3 50S ribosomal protein L44E 2238  
24 3CPW 30 2 50S ribosomal protein L44E 272569  
25 3CCU 29 3 50S ribosomal protein L44E 272569  
26 1VQ6 32 3 50S ribosomal protein L44E 2238  
27 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238  
28 3CCL 29 3 50S ribosomal protein L44E 272569  
29 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238  
30 1YJ9 31 3 50S ribosomal protein L44E 2238  
31 3CD6 29 3 50S ribosomal protein L44E 272569  
32 3CCV 29 3 50S ribosomal protein L44E 272569  
33 3CC4 29 3 50S ribosomal protein L44E 272569  
34 2OTL 30 3 50S ribosomal protein L44E 2238  
35 3G71 30 3 50S ribosomal protein L44E 2238  
36 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238  
37 1VQ4 31 3 50S ribosomal protein L44E 2238  
38 1YJN 31 3 50S ribosomal protein L44E 2238  
39 3CMA 29 3 50S ribosomal protein L44E 2238  
40 3CCS 29 3 50S ribosomal protein L44E 272569  
41 3CCQ 29 3 50S ribosomal protein L44E 272569  
42 3I56 29 3 50S ribosomal protein L44E 2238  
43 3CCR 29 3 50S ribosomal protein L44E 272569  
44 2OTJ 30 3 50S ribosomal protein L44E 2238  
45 4V88 78 Bo, Do 60S ribosomal protein L42-A 559292  
46 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238  
47 3OW2 30 2 50S ribosomal protein L44E 2238  
48 4U4R 78 Q2, q2 60S ribosomal protein L42-A 559292  
49 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238  
50 1QVG 31 2 50S ribosomal protein L44E 2238  
51 3CME 29 3 50S ribosomal protein L44E 2238  
52 2QEX 30 3 50S ribosomal protein L44e 2238  
53 4U3U 78 Q2, q2 60S ribosomal protein L42-A 559292  
54 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238  
55 4U3M 78 Q2, q2 60S ribosomal protein L42-A 559292  
56 1N8R 30 4 50S ribosomal protein L44E 2238  
57 4U3N 78 Q2, q2 60S ribosomal protein L42-A 559292  
58 1Q81 31 4 50S ribosomal protein L44E 2238  
59 1Q82 31 4 50S ribosomal protein L44E 2238  
60 1QVF 31 2 50S ribosomal protein L44E 2238  
61 4U52 78 Q2, q2 60S ribosomal protein L42-A 559292  
62 4U4Q 78 Q2, q2 60S ribosomal protein L42-A 559292  
63 1NJI 30 4 50S ribosomal protein L44E 2238  
64 4U6F 78 Q2, q2 60S ribosomal protein L42-A 559292  
65 4U4U 78 Q2, q2 60S ribosomal protein L42-A 559292  
66 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238  
67 4U4Z 78 Q2, q2 60S ribosomal protein L42-A 559292  
68 4U4Y 78 Q2, q2 60S ribosomal protein L42-A 559292  
69 4U4N 78 Q2, q2 60S ribosomal protein L42-A 559292  
70 4U55 78 Q2, q2 60S ribosomal protein L42-A 559292  
71 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238  
72 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238  
73 3I55 30 3 50S ribosomal protein L44E 2238  
74 4U51 78 Q2, q2 60S ribosomal protein L42-A 559292  
75 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238  
76 4U53 78 Q2, q2 60S ribosomal protein L42-A 559292  
77 1Q86 31 4 50S ribosomal protein L44E 2238  
78 4U50 78 Q2, q2 60S ribosomal protein L42-A 559292  
79 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238  
80 3G4S 30 3 50S ribosomal protein L44E 2238  
81 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238  
82 4U56 78 Q2, q2 60S ribosomal protein L42-A 559292  
83 2QA4 31 3 50S ribosomal protein L44E 2238  
84 1Q7Y 31 4 50S ribosomal protein L44E 2238  
85 4U4O 78 Q2, q2 60S ribosomal protein L42-A 559292  
86 4V8P 4 AC, DC, FC, HC 60S RIBOSOMAL PROTEIN L36A 5911  
87 4V7R 61 Bf, Df 60S ribosomal protein L42 4932  
88 3J7O 43 o Ribosomal protein eL42 9823  
89 3J7P 44 o Ribosomal protein eL42 9823  
90 3J7Q 43 o Ribosomal protein eL42 9823  
91 3J7R 43 o Ribosomal protein eL42 9823  
92 4UJC 46 Bo 60S RIBOSOMAL PROTEIN L36A 9986  
93 4UJD 43 Ao 60S RIBOSOMAL PROTEIN L36A 9986  
94 3J79 45 i 60S ribosomal protein eL44 36329  
95 3J77 42 92 60S ribosomal protein L42 4932  
96 3J78 42 92 60S ribosomal protein L42 4932  
97 3J6X 44 82 60S ribosomal protein L42 580240  
98 3J6Y 44 82 60S ribosomal protein L42 580240  
99 4UJE 77 Co 60S RIBOSOMAL PROTEIN L36A 9986  
100 4V91 43 o EL42 RIBOSOMAL PROTEIN EL42 28985  
101 4V7E 60 Co 60S ribosomal protein L44E 4565  
102 4V8Y 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932  
103 4V8Z 75 Bo 60S RIBOSOMAL PROTEIN L42-A 4932  
104 4V4N 57 Aj 50S ribosomal protein L44E SEE REMARK 999 2190  
105 4V6W 78 Co 60S ribosomal protein L36A 7227  
106 4V6X 78 Co 60S ribosomal protein L36a 9606  
107 4V8M 79 Bt 60S RIBOSOMAL PROTEIN L44 185431  
108 4V6U 51 Bj 50S ribosomal protein L44E 186497  
109 4V8T 41 o 60S RIBOSOMAL PROTEIN L42-A 559292  
110 4ADX 4 3 RPL44E 187420  
111 3J0O 24 F Ribosomal protein L36a 9986  
112 3J0L 26 F Ribosomal protein L36a 9986  
113 4V6I 69 Br 60S ribosomal protein rpL42 (L44e) 4932  
114 4V7H 50 BZ 60S ribosomal protein L42 5541  
115 4V5Z 84 B4 60S Ribosomal protein L44e 9615  
116 4V4B 46 BZ 60S ribosomal protein L42 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 623
95% 36 68 459
90% 36 68 483
70% 36 68 517
50% 36 117 234
40% 36 117 264
30% 38 317 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47737
95% 1 1 33521
90% 1 1 32049
70% 36 68 510
50% 36 115 238
40% 36 115 274
30% 36 115 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 405
90% 36 74 430
70% 36 74 458
50% 36 74 501
40% 36 74 538
30% 37 309 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 403
90% 36 74 428
70% 36 74 456
50% 36 76 482
40% 36 76 516
30% 36 78 508
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 461
90% 36 68 486
70% 36 68 520
50% 36 70 545
40% 36 70 578
30% 36 70 579
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1647
95% 36 68 457
90% 36 68 481
70% 36 68 515
50% 36 68 574
40% 36 70 577
30% 36 71 560
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 522
50% 36 70 548
40% 36 70 582
30% 36 71 563
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 455
90% 36 68 479
70% 36 68 513
50% 36 68 571
40% 36 68 609
30% 36 118 281
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 408
90% 36 74 433
70% 36 74 462
50% 36 76 484
40% 36 78 499
30% 37 272 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 407
90% 36 74 432
70% 36 74 461
50% 36 124 220
40% 36 124 247
30% 36 124 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 307
95% 34 70 440
90% 34 70 462
70% 34 70 496
50% 34 70 549
40% 34 70 583
30% 34 70 581
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 409
90% 36 74 434
70% 36 74 463
50% 36 74 505
40% 36 74 541
30% 36 74 540
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 480
70% 36 68 514
50% 36 68 572
40% 36 70 576
30% 36 71 559
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 524
50% 36 68 579
40% 36 68 616
30% 36 68 609
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50679
95% 3 5 11214
90% 3 5 11033
70% 3 5 10428
50% 3 5 9377
40% 3 5 8553
30% 3 5 7507
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56257
95% 1 1 39269
90% 1 1 37554
70% 3 21 2232
50% 7 30 1515
40% 7 73 412
30% 26 96 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 467
90% 36 68 492
70% 36 68 526
50% 36 69 562
40% 36 69 601
30% 36 69 598
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57525
95% 36 68 468
90% 36 68 493
70% 36 68 527
50% 36 117 236
40% 36 117 266
30% 36 117 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 464
90% 36 68 489
70% 36 68 523
50% 36 68 578
40% 36 68 615
30% 36 116 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 478
70% 36 68 512
50% 36 68 569
40% 36 116 268
30% 38 312 54
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1630
95% 35 67 471
90% 35 67 496
70% 35 67 533
50% 35 114 242
40% 35 116 267
30% 35 116 289
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42086
95% 36 74 397
90% 36 74 423
70% 36 74 452
50% 36 74 495
40% 36 121 252
30% 36 121 268
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7689
95% 36 74 401
90% 36 74 426
70% 36 74 455
50% 36 74 498
40% 36 76 515
30% 36 77 514
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 404
90% 36 74 429
70% 36 74 457
50% 36 74 499
40% 36 121 253
30% 36 121 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1657
95% 3 21 2177
90% 36 68 485
70% 36 68 519
50% 51 95 298
40% 58 105 287
30% 58 107 303
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49706
95% 1 1 34625
90% 1 7 7970
70% 3 27 1648
50% 36 74 500
40% 36 78 496
30% 36 78 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 431
70% 36 74 459
50% 36 74 502
40% 37 77 507
30% 37 78 511
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.