Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 631
95 % 35 68 772 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 799
70 % 35 68 847
50 % 35 206 203
40 % 45 633 23
30 % 45 633 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49667
95 % 1 1 41176
90 % 1 1 39198
70 % 35 68 848
50 % 35 205 206
40 % 35 205 224
30 % 35 205 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 554
95 % 35 74 695 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 718
70 % 35 74 763
50 % 35 74 822
40 % 35 203 226
30 % 35 203 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 546
95 % 35 74 681 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 706
70 % 35 74 752
50 % 35 76 789
40 % 35 76 822
30 % 35 79 792
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 645
95 % 35 68 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 817
70 % 35 68 865
50 % 35 70 868
40 % 35 70 894
30 % 35 70 887
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2929
95 % 35 68 793 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 821
70 % 35 68 868
50 % 35 68 917
40 % 35 72 866
30 % 35 72 873
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 632
95 % 35 68 773 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 800
70 % 35 68 849
50 % 35 70 880
40 % 35 70 911
30 % 35 71 882
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 657
95 % 35 68 779 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 807
70 % 35 68 854
50 % 35 68 907
40 % 35 68 933
30 % 35 203 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 558
95 % 35 74 696 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 721
70 % 35 74 768
50 % 35 77 776
40 % 44 490 40
30 % 44 490 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 551
95 % 35 74 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 711
70 % 35 74 757
50 % 35 212 200
40 % 35 213 217
30 % 35 213 235
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 602
95 % 33 70 742 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 772
70 % 33 70 813
50 % 33 70 869
40 % 33 70 895
30 % 33 70 889
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 552
95 % 35 74 689 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 712
70 % 35 74 758
50 % 35 74 815
40 % 44 446 52
30 % 44 472 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 637
95 % 35 68 780 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 808
70 % 35 68 855
50 % 35 68 908
40 % 35 70 900
30 % 35 71 881
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 633
95 % 35 68 790 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 818
70 % 35 68 866
50 % 35 68 915
40 % 35 68 940
30 % 35 70 898
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60103
95 % 3 5 15668 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15336
70 % 3 5 14293
50 % 3 5 12618
40 % 3 5 11303
30 % 3 5 9613
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2836
95 % 3 21 3169 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3224
70 % 3 21 3184
50 % 7 30 2164
40 % 7 155 289
30 % 9 159 296
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 646
95 % 35 68 774 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 801
70 % 35 68 850
50 % 35 69 883
40 % 35 69 915
30 % 35 69 903
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60102
95 % 35 68 783 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 811
70 % 35 68 859
50 % 35 198 210
40 % 35 198 232
30 % 35 198 248
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 630
95 % 35 68 771 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 798
70 % 35 68 846
50 % 35 68 901
40 % 35 193 239
30 % 35 193 253
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 642
95 % 35 68 787 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 815
70 % 35 68 844
50 % 35 68 913
40 % 35 203 227
30 % 45 622 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2286
95 % 35 68 788 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 816
70 % 35 68 863
50 % 35 196 211
40 % 35 196 235
30 % 35 196 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62512
95 % 35 74 693 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 716
70 % 35 74 761
50 % 35 74 821
40 % 35 211 218
30 % 35 211 236
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 909
95 % 35 74 680 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 705
70 % 35 74 751
50 % 35 74 807
40 % 35 76 821
30 % 36 78 802
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 553
95 % 35 74 691 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 715
70 % 35 74 760
50 % 35 74 820
40 % 36 205 220
30 % 36 205 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2851
95 % 3 21 3184 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 797
70 % 35 68 845
50 % 51 108 400
40 % 58 133 312
30 % 72 283 160
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62509
95 % 1 1 50944
90 % 1 7 11598
70 % 3 27 2481
50 % 35 74 808
40 % 35 79 783
30 % 35 79 791
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 550
95 % 35 74 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 702
70 % 35 74 748
50 % 35 74 812
40 % 36 78 805
30 % 36 78 804

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 31 3 50S ribosomal protein L44e 2238
2 1VQO 31 3 50S ribosomal protein L44E 2238
3 1VQ8 31 3 50S ribosomal protein L44E 2238
4 1S72 31 3 50S ribosomal protein L44E 2238
5 1JJ2 30 2 RIBOSOMAL PROTEIN L44E 2238
6 1YHQ 31 3 50S ribosomal protein L44E 2238
7 1VQP 31 3 50S ribosomal protein L44E 2238
8 1VQM 31 3 50S ribosomal protein L44E 2238
9 3CC2 29 3 50S ribosomal protein L44E 2238
10 1VQL 31 3 50S ribosomal protein L44E 2238
11 1VQK 31 3 50S ribosomal protein L44E 2238
12 1VQN 32 3 50S ribosomal protein L44E 2238
13 1YIJ 31 3 50S ribosomal protein L44E 2238
14 1YI2 31 3 50S ribosomal protein L44E 2238
15 1VQ9 31 3 50S ribosomal protein L44E 2238
16 1VQ7 31 3 50S ribosomal protein L44E 2238
17 3CCM 29 3 50S ribosomal protein L44E 2238
18 1VQ5 31 3 50S ribosomal protein L44E 2238
19 3CC7 29 3 50S ribosomal protein L44E 2238
20 1YIT 4 3 50S RIBOSOMAL PROTEIN L44E 2238
21 3CCE 29 3 50S ribosomal protein L44E 2238
22 3G6E 30 3 50S ribosomal protein L44E 2238
23 3CPW 30 2 50S ribosomal protein L44E 2238
24 3CCU 29 3 50S ribosomal protein L44E 2238
25 1VQ6 32 3 50S ribosomal protein L44E 2238
26 1M90 31 4 RIBOSOMAL PROTEIN L44E 2238
27 3CCL 29 3 50S ribosomal protein L44E 2238
28 1YJW 4 3 50S RIBOSOMAL PROTEIN L44E 2238
29 1YJ9 31 3 50S ribosomal protein L44E 2238
30 3CD6 29 3 50S ribosomal protein L44E 2238
31 3CCV 29 3 50S ribosomal protein L44E 2238
32 3CC4 29 3 50S ribosomal protein L44E 2238
33 2OTL 30 3 50S ribosomal protein L44E 2238
34 3G71 30 3 50S ribosomal protein L44E 2238
35 1FFK 28 Z RIBOSOMAL PROTEIN L44E 2238
36 1VQ4 31 3 50S ribosomal protein L44E 2238
37 1YJN 31 3 50S ribosomal protein L44E 2238
38 3CMA 29 3 50S ribosomal protein L44E 2238
39 3CCS 29 3 50S ribosomal protein L44E 2238
40 3CCQ 29 3 50S ribosomal protein L44E 2238
41 3I56 29 3 50S ribosomal protein L44E 2238
42 3CCR 29 3 50S ribosomal protein L44E 2238
43 2OTJ 30 3 50S ribosomal protein L44E 2238
44 1KQS 32 2 RIBOSOMAL PROTEIN L44E 2238
45 3OW2 30 2 50S ribosomal protein L44E 2238
46 3CXC 31 2 RIBOSOMAL PROTEIN L44E 2238
47 1QVG 31 2 50S ribosomal protein L44E 2238
48 3CME 29 3 50S ribosomal protein L44E 2238
49 2QEX 30 3 50S ribosomal protein L44e 2238
50 1KC8 30 4 RIBOSOMAL PROTEIN L44E 2238
51 1N8R 30 4 50S ribosomal protein L44E 2238
52 1Q81 31 4 50S ribosomal protein L44E 2238
53 1Q82 31 4 50S ribosomal protein L44E 2238
54 1QVF 31 2 50S ribosomal protein L44E 2238
55 1NJI 30 4 50S ribosomal protein L44E 2238
56 1K73 30 4 RIBOSOMAL PROTEIN L44E 2238
57 1K9M 30 4 RIBOSOMAL PROTEIN L44E 2238
58 1KD1 30 4 RIBOSOMAL PROTEIN L44E 2238
59 3I55 30 3 50S ribosomal protein L44E 2238
60 1K8A 30 4 RIBOSOMAL PROTEIN L44E 2238
61 1Q86 31 4 50S ribosomal protein L44E 2238
62 1M1K 30 4 RIBOSOMAL PROTEIN L44E 2238
63 3G4S 30 3 50S ribosomal protein L44E 2238
64 3CCJ 29 3 50S ribosomal protein L44E 2238
65 1W2B 3 2 50S RIBOSOMAL PROTEIN L44E LA, HLA, RIBOSOMAL PROTEIN L44E 2238
66 2QA4 31 3 50S ribosomal protein L44E 2238
67 1Q7Y 31 4 50S ribosomal protein L44E 2238
68 4ADX 4 3 RPL44E 145262