Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 661
90 % 36 68 690
70 % 36 68 736
50 % 36 176 200
40 % 36 176 221
30 % 44 510 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58908
95 % 1 1 41048
90 % 1 1 39066
70 % 36 68 728
50 % 36 172 207
40 % 36 172 231
30 % 36 172 236
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 586
90 % 36 74 616
70 % 36 74 646
50 % 36 74 693
40 % 36 74 732
30 % 43 492 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 584
90 % 36 74 614
70 % 36 74 643
50 % 36 76 665
40 % 36 76 708
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 470
95 % 36 68 662
90 % 36 68 692
70 % 36 68 738
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2169
95 % 36 68 660
90 % 36 68 688
70 % 36 68 734
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 741
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 486
95 % 36 68 658
90 % 36 68 686
70 % 36 68 731
50 % 36 68 781
40 % 36 68 816
30 % 36 175 230
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 590
90 % 36 74 620
70 % 36 74 652
50 % 36 76 669
40 % 36 78 689
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 589
90 % 36 74 619
70 % 36 74 651
50 % 36 180 196
40 % 36 180 215
30 % 36 180 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 449
95 % 34 70 632
90 % 34 70 661
70 % 34 70 710
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 591
90 % 36 74 621
70 % 36 74 653
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 474
95 % 36 68 667
90 % 36 68 696
70 % 36 68 743
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62252
95 % 3 5 13932
90 % 3 5 13677
70 % 3 5 12834
50 % 3 5 11458
40 % 3 5 10390
30 % 3 5 9014
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68547
95 % 1 1 47486
90 % 1 1 45140
70 % 3 21 2849
50 % 7 30 1903
40 % 7 129 298
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 476
95 % 36 68 670
90 % 36 68 699
70 % 36 68 747
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69950
95 % 36 68 671
90 % 36 68 700
70 % 36 68 748
50 % 36 173 203
40 % 36 173 226
30 % 36 173 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 742
50 % 36 68 786
40 % 36 68 819
30 % 36 169 240
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 657
90 % 36 68 685
70 % 36 68 730
50 % 36 68 780
40 % 36 174 224
30 % 44 501 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2152
95 % 36 68 654
90 % 36 68 682
70 % 36 68 726
50 % 36 171 206
40 % 36 173 225
30 % 36 173 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52160
95 % 36 74 575
90 % 36 74 606
70 % 36 74 639
50 % 36 74 687
40 % 36 180 212
30 % 36 180 222
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9818
95 % 36 74 580
90 % 36 74 612
70 % 36 74 642
50 % 36 74 689
40 % 36 76 706
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 585
90 % 36 74 615
70 % 36 74 644
50 % 36 74 691
40 % 37 180 214
30 % 37 180 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2180
95 % 3 21 2818
90 % 36 68 691
70 % 36 68 737
50 % 51 105 322
40 % 58 122 278
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61157
95 % 1 1 42297
90 % 1 7 9912
70 % 3 27 2122
50 % 36 74 692
40 % 36 79 677
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 587
90 % 36 74 617
70 % 36 74 649
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
46 3OW2 29 1 50S ribosomal protein L39e 2238
47 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
48 1QVG 30 1 50S ribosomal protein L39e 2238
49 3CME 28 2 50S ribosomal protein L39e 2238
50 2QEX 29 2 50S ribosomal protein L39e 2238
51 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
52 1N8R 29 3 50S ribosomal protein L39e 2238
53 1Q81 30 3 50S ribosomal protein L39e 2238
54 1Q82 30 3 50S ribosomal protein L39e 2238
55 1QVF 30 1 50S ribosomal protein L39e 2238
56 1NJI 29 3 50S ribosomal protein L39e 2238
57 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
58 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
59 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
60 3I55 29 2 50S ribosomal protein L39e 2238
61 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
62 1Q86 30 3 50S ribosomal protein L39e 2238
63 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
64 3G4S 29 2 50S ribosomal protein L39e 2238
65 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
66 2QA4 30 2 50S ribosomal protein L39e 2238
67 1Q7Y 30 3 50S ribosomal protein L39e 2238
68 4ADX 3 2 RPL39E 145262