Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 231
40 % 36 138 258
30 % 43 417 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53956
95 % 1 1 37687
90 % 1 1 35923
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 457
90 % 36 74 483
70 % 36 74 526
50 % 36 74 603
40 % 36 74 652
30 % 42 406 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 455
90 % 36 74 481
70 % 36 74 523
50 % 36 76 579
40 % 36 76 624
30 % 36 78 599
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 706
30 % 36 70 707
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1903
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 703
30 % 36 71 687
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 708
30 % 36 71 690
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 725
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 76 581
40 % 36 78 597
30 % 42 351 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 460
90 % 36 74 486
70 % 36 74 531
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 709
30 % 34 70 709
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 463
90 % 36 74 489
70 % 36 74 534
50 % 36 74 610
40 % 36 74 659
30 % 36 74 650
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 702
30 % 36 71 686
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 728
30 % 36 68 729
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57082
95 % 3 5 12676
90 % 3 5 12439
70 % 3 5 11713
50 % 3 5 10502
40 % 3 5 9582
30 % 3 5 8353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63043
95 % 1 1 43760
90 % 1 1 41723
70 % 3 21 2551
50 % 7 30 1716
40 % 7 91 390
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 720
30 % 36 69 723
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64384
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 727
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 412 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1881
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47698
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8845
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 622
30 % 36 77 610
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1915
95 % 3 21 2493
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56064
95 % 1 1 38858
90 % 1 7 9001
70 % 3 27 1871
50 % 36 74 602
40 % 36 79 583
30 % 36 79 589
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 458
90 % 36 74 484
70 % 36 74 529
50 % 36 74 607
40 % 37 77 609
30 % 37 78 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
46 3OW2 29 1 50S ribosomal protein L39e 2238
47 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
48 1QVG 30 1 50S ribosomal protein L39e 2238
49 3CME 28 2 50S ribosomal protein L39e 2238
50 2QEX 29 2 50S ribosomal protein L39e 2238
51 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
52 1N8R 29 3 50S ribosomal protein L39e 2238
53 1Q81 30 3 50S ribosomal protein L39e 2238
54 1Q82 30 3 50S ribosomal protein L39e 2238
55 1QVF 30 1 50S ribosomal protein L39e 2238
56 1NJI 29 3 50S ribosomal protein L39e 2238
57 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
58 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
59 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
60 3I55 29 2 50S ribosomal protein L39e 2238
61 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
62 1Q86 30 3 50S ribosomal protein L39e 2238
63 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
64 3G4S 29 2 50S ribosomal protein L39e 2238
65 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
66 2QA4 30 2 50S ribosomal protein L39e 2238
67 1Q7Y 30 3 50S ribosomal protein L39e 2238
68 4ADX 3 2 RPL39E 145262