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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 482 Members. Sequence cutoff: 90% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 30 2 50S ribosomal protein L39e 272569  
2 1VQO 30 2 50S ribosomal protein L39e 2238  
3 1VQ8 30 2 50S ribosomal protein L39e 2238  
4 1S72 30 2 50S ribosomal protein L39e 2238  
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238  
6 1YHQ 30 2 50S ribosomal protein L39e 2238  
7 1VQP 30 2 50S ribosomal protein L39e 2238  
8 1VQM 30 2 50S ribosomal protein L39e 2238  
9 3CC2 28 2 50S ribosomal protein L39e 2238  
10 1VQL 30 2 50S ribosomal protein L39e 2238  
11 1VQK 30 2 50S ribosomal protein L39e 2238  
12 1VQN 31 2 50S ribosomal protein L39e 2238  
13 1YIJ 30 2 50S ribosomal protein L39e 2238  
14 1YI2 30 2 50S ribosomal protein L39e 2238  
15 1VQ9 30 2 50S ribosomal protein L39e 2238  
16 1VQ7 30 2 50S ribosomal protein L39e 2238  
17 3CCM 28 2 50S ribosomal protein L39e 2238  
18 1VQ5 30 2 50S ribosomal protein L39e 2238  
19 3CCJ 28 2 50S ribosomal protein L39e 2238  
20 3CC7 28 2 50S ribosomal protein L39e 2238  
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
22 3CCE 28 2 50S ribosomal protein L39e 2238  
23 3G6E 29 2 50S ribosomal protein L39e 2238  
24 3CPW 29 1 50S ribosomal protein L39e 2238  
25 3CCU 28 2 50S ribosomal protein L39e 2238  
26 1VQ6 31 2 50S ribosomal protein L39e 2238  
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238  
28 3CCL 28 2 50S ribosomal protein L39e 2238  
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
30 1YJ9 30 2 50S ribosomal protein L39e 2238  
31 3CD6 28 2 50S ribosomal protein L39e 2238  
32 3CCV 28 2 50S ribosomal protein L39e 2238  
33 3CC4 28 2 50S ribosomal protein L39e 2238  
34 2OTL 29 2 50S ribosomal protein L39e 2238  
35 3G71 29 2 50S ribosomal protein L39e 2238  
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238  
37 1VQ4 30 2 50S ribosomal protein L39e 2238  
38 1YJN 30 2 50S ribosomal protein L39e 2238  
39 3CMA 28 2 50S ribosomal protein L39e 2238  
40 3CCS 28 2 50S ribosomal protein L39e 2238  
41 3CCQ 28 2 50S ribosomal protein L39e 2238  
42 3I56 28 2 50S ribosomal protein L39e 2238  
43 3CCR 28 2 50S ribosomal protein L39e 2238  
44 2OTJ 29 2 50S ribosomal protein L39e 2238  
45 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238  
46 3OW2 29 1 50S ribosomal protein L39e 2238  
47 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238  
48 1QVG 30 1 50S ribosomal protein L39e 2238  
49 3CME 28 2 50S ribosomal protein L39e 2238  
50 2QEX 29 2 50S ribosomal protein L39e 2238  
51 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238  
52 1N8R 29 3 50S ribosomal protein L39e 2238  
53 1Q81 30 3 50S ribosomal protein L39e 2238  
54 1Q82 30 3 50S ribosomal protein L39e 2238  
55 1QVF 30 1 50S ribosomal protein L39e 2238  
56 1NJI 29 3 50S ribosomal protein L39e 2238  
57 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238  
58 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238  
59 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238  
60 3I55 29 2 50S ribosomal protein L39e 2238  
61 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238  
62 1Q86 30 3 50S ribosomal protein L39e 2238  
63 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238  
64 3G4S 29 2 50S ribosomal protein L39e 2238  
65 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238  
66 2QA4 30 2 50S ribosomal protein L39e 2238  
67 1Q7Y 30 3 50S ribosomal protein L39e 2238  
68 4ADX 3 2 RPL39E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 549
95% 36 68 450
90% 36 68 472
70% 36 68 504
50% 36 105 321
40% 36 105 344
30% 37 407 56
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46741
95% 1 1 32816
90% 1 1 31401
70% 36 68 497
50% 36 103 332
40% 36 103 355
30% 36 103 366
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 278
95% 36 74 396
90% 36 74 420
70% 36 74 445
50% 36 74 494
40% 36 74 524
30% 36 399 62
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 276
95% 36 74 394
90% 36 74 418
70% 36 74 443
50% 36 76 477
40% 36 76 505
30% 36 78 500
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 452
90% 36 68 475
70% 36 68 507
50% 36 70 532
40% 36 70 558
30% 36 70 565
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1540
95% 36 68 448
90% 36 68 470
70% 36 68 502
50% 36 68 556
40% 36 70 557
30% 36 71 550
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 477
70% 36 68 509
50% 36 70 534
40% 36 70 561
30% 36 71 552
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 328
95% 36 68 446
90% 36 68 468
70% 36 68 500
50% 36 68 553
40% 36 68 584
30% 36 106 350
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 399
90% 36 74 423
70% 36 74 448
50% 36 76 478
40% 36 78 487
30% 36 374 73
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 398
90% 36 74 422
70% 36 74 447
50% 36 112 286
40% 36 112 311
30% 36 112 327
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 303
95% 34 70 431
90% 34 70 451
70% 34 70 482
50% 34 70 535
40% 34 70 562
30% 34 70 566
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 400
90% 36 74 424
70% 36 74 449
50% 36 74 496
40% 36 74 526
30% 36 74 529
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 313
95% 36 68 447
90% 36 68 469
70% 36 68 501
50% 36 68 554
40% 36 70 556
30% 36 71 549
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 456
90% 36 68 479
70% 36 68 511
50% 36 68 560
40% 36 68 589
30% 36 68 587
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49640
95% 3 5 11000
90% 3 5 10827
70% 3 5 10251
50% 3 5 9205
40% 3 5 8401
30% 3 5 7383
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55164
95% 1 1 38499
90% 1 1 36848
70% 3 21 2138
50% 7 30 1454
40% 7 58 699
30% 26 81 479
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 458
90% 36 68 481
70% 36 68 513
50% 36 69 547
40% 36 69 577
30% 36 69 579
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56422
95% 36 68 459
90% 36 68 482
70% 36 68 514
50% 36 105 324
40% 36 105 346
30% 36 105 357
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 455
90% 36 68 478
70% 36 68 510
50% 36 68 559
40% 36 68 588
30% 36 104 362
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 312
95% 36 68 445
90% 36 68 467
70% 36 68 499
50% 36 68 552
40% 36 104 350
30% 37 402 60
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1524
95% 35 67 463
90% 35 67 486
70% 35 67 520
50% 35 102 334
40% 35 104 348
30% 35 104 359
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41214
95% 36 74 389
90% 36 74 414
70% 36 74 440
50% 36 74 489
40% 36 109 318
30% 36 109 332
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7522
95% 36 74 392
90% 36 74 416
70% 36 74 442
50% 36 74 491
40% 36 76 504
30% 36 77 506
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 395
90% 36 74 419
70% 36 74 444
50% 36 74 492
40% 36 109 321
30% 36 109 335
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1551
95% 3 21 2060
90% 36 68 474
70% 36 68 506
50% 51 97 279
40% 57 106 272
30% 57 108 292
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48683
95% 1 1 33906
90% 1 7 7819
70% 3 27 1549
50% 36 74 493
40% 36 78 484
30% 36 78 502
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 279
95% 36 74 397
90% 36 74 421
70% 36 74 446
50% 36 74 495
40% 37 77 495
30% 37 78 503
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.