Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 741
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 141 223
40 % 36 141 254
30 % 43 424 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54268
95 % 1 1 37904
90 % 1 1 36116
70 % 36 68 602
50 % 36 136 236
40 % 36 136 263
30 % 36 136 274
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 461
90 % 36 74 488
70 % 36 74 533
50 % 36 74 621
40 % 36 74 664
30 % 42 413 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 459
90 % 36 74 486
70 % 36 74 530
50 % 36 76 590
40 % 36 76 640
30 % 36 78 614
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 672
40 % 36 70 714
30 % 36 70 715
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1921
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 712
30 % 36 71 698
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 674
40 % 36 70 716
30 % 36 71 701
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 697
40 % 36 68 731
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 467
90 % 36 74 495
70 % 36 74 540
50 % 36 76 592
40 % 36 78 612
30 % 42 355 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 465
90 % 36 74 493
70 % 36 74 538
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 506
90 % 34 70 531
70 % 34 70 582
50 % 34 70 675
40 % 34 70 717
30 % 34 70 717
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 74 627
40 % 36 74 670
30 % 36 74 663
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 698
40 % 36 70 711
30 % 36 71 697
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 702
40 % 36 68 734
30 % 36 68 733
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57409
95 % 3 5 12774
90 % 3 5 12536
70 % 3 5 11797
50 % 3 5 10576
40 % 3 5 9648
30 % 3 5 8401
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63401
95 % 1 1 44014
90 % 1 1 41942
70 % 3 21 2566
50 % 7 30 1727
40 % 7 94 376
30 % 26 117 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 688
40 % 36 69 727
30 % 36 69 729
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64744
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 701
40 % 36 68 733
30 % 36 136 275
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 522
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 140 256
30 % 43 419 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1897
95 % 36 68 520
90 % 36 68 548
70 % 36 68 601
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47979
95 % 36 74 451
90 % 36 74 479
70 % 36 74 525
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8924
95 % 36 74 454
90 % 36 74 482
70 % 36 74 528
50 % 36 74 616
40 % 36 76 639
30 % 36 77 623
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1932
95 % 3 21 2510
90 % 36 68 557
70 % 36 68 610
50 % 51 95 350
40 % 58 109 313
30 % 58 111 326
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56389
95 % 1 1 39085
90 % 1 7 9082
70 % 3 27 1885
50 % 36 74 620
40 % 36 79 600
30 % 36 79 603
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 462
90 % 36 74 490
70 % 36 74 535
50 % 36 74 624
40 % 37 77 623
30 % 37 78 617

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
46 3OW2 29 1 50S ribosomal protein L39e 2238
47 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
48 1QVG 30 1 50S ribosomal protein L39e 2238
49 3CME 28 2 50S ribosomal protein L39e 2238
50 2QEX 29 2 50S ribosomal protein L39e 2238
51 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
52 1N8R 29 3 50S ribosomal protein L39e 2238
53 1Q81 30 3 50S ribosomal protein L39e 2238
54 1Q82 30 3 50S ribosomal protein L39e 2238
55 1QVF 30 1 50S ribosomal protein L39e 2238
56 1NJI 29 3 50S ribosomal protein L39e 2238
57 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
58 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
59 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
60 3I55 29 2 50S ribosomal protein L39e 2238
61 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
62 1Q86 30 3 50S ribosomal protein L39e 2238
63 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
64 3G4S 29 2 50S ribosomal protein L39e 2238
65 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
66 2QA4 30 2 50S ribosomal protein L39e 2238
67 1Q7Y 30 3 50S ribosomal protein L39e 2238
68 4ADX 3 2 RPL39E 145262