Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 762
95 % 36 68 546
90 % 36 68 576
70 % 36 68 626
50 % 36 146 222
40 % 36 146 248
30 % 44 446 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55969
95 % 1 1 39035
90 % 1 1 37194
70 % 36 68 619
50 % 36 142 230
40 % 36 142 259
30 % 36 142 267
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 477
90 % 36 74 506
70 % 36 74 550
50 % 36 74 636
40 % 36 74 683
30 % 43 435 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 475
90 % 36 74 504
70 % 36 74 547
50 % 36 76 617
40 % 36 76 658
30 % 36 78 646
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 548
90 % 36 68 578
70 % 36 68 629
50 % 36 70 690
40 % 36 70 736
30 % 36 70 739
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2007
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 733
30 % 36 71 722
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 550
90 % 36 68 580
70 % 36 68 632
50 % 36 70 691
40 % 36 70 737
30 % 36 71 725
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 68 751
30 % 36 145 260
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 482
90 % 36 74 512
70 % 36 74 557
50 % 36 76 621
40 % 36 78 635
30 % 43 372 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 325
95 % 36 74 480
90 % 36 74 510
70 % 36 74 555
50 % 36 150 216
40 % 36 150 239
30 % 36 150 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 600
50 % 34 70 692
40 % 34 70 738
30 % 34 70 740
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 483
90 % 36 74 513
70 % 36 74 558
50 % 36 74 641
40 % 36 74 688
30 % 36 74 691
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 70 731
30 % 36 71 721
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59195
95 % 3 5 13203
90 % 3 5 12963
70 % 3 5 12196
50 % 3 5 10910
40 % 3 5 9928
30 % 3 5 8632
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65308
95 % 1 1 45290
90 % 1 1 43135
70 % 3 21 2657
50 % 7 30 1787
40 % 7 99 369
30 % 26 122 312
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 69 703
40 % 36 69 745
30 % 36 69 751
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66670
95 % 36 68 555
90 % 36 68 585
70 % 36 68 636
50 % 36 143 224
40 % 36 143 252
30 % 36 143 262
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 68 717
40 % 36 68 754
30 % 36 140 273
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 68 711
40 % 36 145 249
30 % 44 441 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1984
95 % 36 68 540
90 % 36 68 568
70 % 36 68 618
50 % 36 141 229
40 % 36 143 251
30 % 36 143 261
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49495
95 % 36 74 468
90 % 36 74 498
70 % 36 74 543
50 % 36 74 630
40 % 36 150 236
30 % 36 150 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9249
95 % 36 74 471
90 % 36 74 501
70 % 36 74 546
50 % 36 74 632
40 % 36 76 657
30 % 36 77 656
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 476
90 % 36 74 505
70 % 36 74 548
50 % 36 74 634
40 % 37 151 235
30 % 37 151 248
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2016
95 % 3 21 2610
90 % 36 68 577
70 % 36 68 627
50 % 51 101 321
40 % 58 115 285
30 % 58 117 296
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58143
95 % 1 1 40249
90 % 1 7 9396
70 % 3 27 1957
50 % 36 74 635
40 % 36 79 625
30 % 36 79 636
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 478
90 % 36 74 508
70 % 36 74 553
50 % 36 74 639
40 % 37 77 647
30 % 37 78 649

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 5DAT 75 O9, o9 60S ribosomal protein L39 4932
74 3I55 29 2 50S ribosomal protein L39e 2238
75 5I4L 75 O9, o9 60S ribosomal protein L39 4932
76 4U51 75 O9, o9 60S ribosomal protein L39 4932
77 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
78 4U53 75 O9, o9 60S ribosomal protein L39 4932
79 1Q86 30 3 50S ribosomal protein L39e 2238
80 4U50 75 O9, o9 60S ribosomal protein L39 4932
81 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
82 3G4S 29 2 50S ribosomal protein L39e 2238
83 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
84 4U56 75 O9, o9 60S ribosomal protein L39 4932
85 2QA4 30 2 50S ribosomal protein L39e 2238
86 1Q7Y 30 3 50S ribosomal protein L39e 2238
87 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
88 4U4O 75 O9, o9 60S ribosomal protein L39 4932
89 4V8P 3 AB, DB, FB, HB RPL39 5911
90 5FCI 75 O9, o9 60S ribosomal protein L39 4932
91 5DC3 75 O9, o9 60S ribosomal protein L39 4932
92 4V7R 60 Be, De 60S ribosomal protein L39 4932
93 5IT7 40 ll 60S ribosomal protein L39 4932
94 3JCT 38 l 60S ribosomal protein L39 4932
95 3JCS 46 l ribosomal protein L39e 5661
96 5GAK 34 n 60S ribosomal protein L39 4932
97 5FL8 36 l 60S ribosomal protein L39 4932
98 5APN 40 l 60S ribosomal protein L39 4932
99 5APO 40 l 60S ribosomal protein L39 4932
100 3JBN 49 Ae 60S ribosomal protein eL39 5833
101 3JBO 52 Ae 60S ribosomal protein eL39 5833
102 3JBP 49 Ae 60S ribosomal protein eL39 5833
103 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
104 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
105 3JAG 37 l eL39 9986
106 3JAH 37 l eL39 9986
107 3JAI 37 l eL39 9986
108 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
109 5AJ0 40 Al 60S ribosomal protein L39 9606
110 3J92 37 l eL39 9986
111 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
112 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
113 4V3P 59 Lo Ribosomal protein L39 4565
114 3J7O 40 l Ribosomal protein eL39 9823
115 3J7P 41 l Ribosomal protein eL39 9823
116 3J7Q 40 l Ribosomal protein eL39 9823
117 3J7R 40 l Ribosomal protein eL39 9823
118 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
119 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
120 3J79 41 e 60S ribosomal protein eL39 5833
121 3J77 39 89 60S ribosomal protein L39 4932
122 3J78 39 89 60S ribosomal protein L39 4932
123 3J6X 41 79 60S ribosomal protein L39 4932
124 3J6Y 41 79 60S ribosomal protein L39 4932
125 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
126 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
127 4V7F 39 j 60S ribosomal protein L39 4932
128 4V7E 59 Cl 60S ribosomal protein L39E 4565
129 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
130 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
131 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
132 4V6W 73 Cl 60S ribosomal protein L39 7227
133 4V6X 73 Cl 60S ribosomal protein L39 9606
134 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
135 4V6U 36 Bf 50S ribosomal protein L39e 2261
136 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
137 4ADX 3 2 RPL39E 145262
138 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
139 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
140 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
141 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
142 4V7H 21 B1 60S ribosomal protein L39 5541
143 4V5Z 83 B3 60S Ribosomal protein L39e 9612