Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 660
90 % 36 68 689
70 % 36 68 734
50 % 36 175 201
40 % 36 175 223
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58832
95 % 1 1 41000
90 % 1 1 39021
70 % 36 68 726
50 % 36 171 207
40 % 36 171 231
30 % 36 171 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 584
90 % 36 74 615
70 % 36 74 645
50 % 36 74 693
40 % 36 74 732
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 582
90 % 36 74 613
70 % 36 74 642
50 % 36 76 664
40 % 36 76 707
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 661
90 % 36 68 691
70 % 36 68 736
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2168
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 471
95 % 36 68 664
90 % 36 68 693
70 % 36 68 739
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 485
95 % 36 68 657
90 % 36 68 685
70 % 36 68 729
50 % 36 68 781
40 % 36 68 816
30 % 36 174 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 588
90 % 36 74 619
70 % 36 74 651
50 % 36 76 669
40 % 36 78 688
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 587
90 % 36 74 618
70 % 36 74 650
50 % 36 179 196
40 % 36 179 216
30 % 36 179 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 448
95 % 34 70 631
90 % 34 70 660
70 % 34 70 709
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 589
90 % 36 74 620
70 % 36 74 652
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 686
70 % 36 68 730
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 741
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62170
95 % 3 5 13912
90 % 3 5 13660
70 % 3 5 12818
50 % 3 5 11446
40 % 3 5 10379
30 % 3 5 9008
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68458
95 % 1 1 47435
90 % 1 1 45092
70 % 3 21 2846
50 % 7 30 1900
40 % 7 128 299
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 475
95 % 36 68 669
90 % 36 68 698
70 % 36 68 745
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69860
95 % 36 68 670
90 % 36 68 699
70 % 36 68 746
50 % 36 172 204
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 740
50 % 36 68 786
40 % 36 68 819
30 % 36 168 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 656
90 % 36 68 684
70 % 36 68 728
50 % 36 68 780
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 170 206
40 % 36 172 227
30 % 36 172 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52086
95 % 36 74 573
90 % 36 74 605
70 % 36 74 638
50 % 36 74 687
40 % 36 179 214
30 % 36 179 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9805
95 % 36 74 578
90 % 36 74 611
70 % 36 74 641
50 % 36 74 689
40 % 36 76 705
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 583
90 % 36 74 614
70 % 36 74 643
50 % 36 74 691
40 % 37 179 215
30 % 37 179 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2179
95 % 3 21 2814
90 % 36 68 690
70 % 36 68 735
50 % 51 105 321
40 % 58 122 277
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61078
95 % 1 1 42249
90 % 1 7 9900
70 % 3 27 2114
50 % 36 74 692
40 % 36 79 676
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 585
90 % 36 74 616
70 % 36 74 648
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 5DAT 75 O9, o9 60S ribosomal protein L39 4932
74 3I55 29 2 50S ribosomal protein L39e 2238
75 5I4L 75 O9, o9 60S ribosomal protein L39 4932
76 4U51 75 O9, o9 60S ribosomal protein L39 4932
77 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
78 4U53 75 O9, o9 60S ribosomal protein L39 4932
79 1Q86 30 3 50S ribosomal protein L39e 2238
80 4U50 75 O9, o9 60S ribosomal protein L39 4932
81 5LYB 75 O9, o9 60S ribosomal protein L39 4932
82 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
83 3G4S 29 2 50S ribosomal protein L39e 2238
84 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
85 4U56 75 O9, o9 60S ribosomal protein L39 4932
86 2QA4 30 2 50S ribosomal protein L39e 2238
87 5TGA 75 O9, o9 60S ribosomal protein L39 4932
88 1Q7Y 30 3 50S ribosomal protein L39e 2238
89 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
90 4U4O 75 O9, o9 60S ribosomal protein L39 4932
91 5DGV 75 O9, o9 60S ribosomal protein L39 4932
92 5DGE 75 O9, o9 60S ribosomal protein L39 4932
93 4V8P 3 AB, DB, FB, HB RPL39 5911
94 5FCI 75 O9, o9 60S ribosomal protein L39 4932
95 5DC3 75 O9, o9 60S ribosomal protein L39 4932
96 5DGF 75 O9, o9 60S ribosomal protein L39 4932
97 5TGM 75 O9, o9 60S ribosomal protein L39 4932
98 4V7R 60 Be, De 60S ribosomal protein L39 4932
99 5UMD 41 e 60S ribosomal protein L39 5833
100 5MC6 52 AL 60S ribosomal protein L39 4932
101 5H4P 39 l 60S ribosomal protein L39 4932
102 5M1J 59 l5 60S ribosomal protein L39 4932
103 5LZS 37 l Uncharacterized protein 9986
104 5LZT 37 l eL39 9986
105 5LZU 37 l eL39 9986
106 5LZV 37 l eL39 9986
107 5LZW 37 l eL39 9986
108 5LZX 37 l eL39 9986
109 5LZY 37 l eL39 9986
110 5LZZ 37 l eL39 9986
111 5T62 41 y 60S ribosomal protein L39 4932
112 5T6R 40 y 60S ribosomal protein L39 4932
113 5T5H 40 q Ribosomal protein L39 5693
114 5T2A 41 o eL39 5661
115 5T2C 26 f 60S ribosomal protein L39 9606
116 5JUO 43 QA eL39 (yeast L39) 4932
117 5JUP 43 QA eL39 (yeast L39) 4932
118 5JUS 43 QA eL39 (yeast L39) 4932
119 5JUT 43 QA eL39 (yeast L39) 4932
120 5JUU 43 QA eL39 (yeast L39) 4932
121 5JCS 20 l 60S ribosomal protein L39 4932
122 5IT7 40 ll 60S ribosomal protein L39 4932
123 3JCT 38 l 60S ribosomal protein L39 4932
124 3JCS 46 l ribosomal protein L39e 5661
125 5GAK 34 n 60S ribosomal protein L39 4932
126 5FL8 36 l 60S ribosomal protein L39 4932
127 5APN 40 l 60S ribosomal protein L39 4932
128 5APO 40 l 60S ribosomal protein L39 4932
129 3JBN 49 Ae 60S ribosomal protein eL39 5833
130 3JBO 52 Ae 60S ribosomal protein eL39 5833
131 3JBP 49 Ae 60S ribosomal protein eL39 5833
132 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
133 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
134 3JAG 37 l eL39 9986
135 3JAH 37 l eL39 9986
136 3JAI 37 l eL39 9986
137 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
138 5AJ0 40 Al 60S ribosomal protein L39 9606
139 3J92 37 l eL39 9986
140 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
141 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
142 4V3P 59 Lo Ribosomal protein L39 4565
143 3J7O 40 l Ribosomal protein eL39 9823
144 3J7P 41 l Ribosomal protein eL39 9823
145 3J7Q 40 l Ribosomal protein eL39 9823
146 3J7R 40 l Ribosomal protein eL39 9823
147 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
148 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
149 3J79 41 e 60S ribosomal protein eL39 5833
150 3J77 39 89 60S ribosomal protein L39 4932
151 3J78 39 89 60S ribosomal protein L39 4932
152 3J6X 41 79 60S ribosomal protein L39 4932
153 3J6Y 41 79 60S ribosomal protein L39 4932
154 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
155 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
156 4V7F 39 j 60S ribosomal protein L39 4932
157 4V7E 59 Cl 60S ribosomal protein L39E 4565
158 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
159 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
160 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
161 4V6W 73 Cl 60S ribosomal protein L39 7227
162 4V6X 73 Cl 60S ribosomal protein L39 9606
163 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
164 4V6U 36 Bf 50S ribosomal protein L39e 2261
165 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
166 4ADX 3 2 RPL39E 145262
167 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
168 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
169 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
170 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
171 4V7H 21 B1 60S ribosomal protein L39 5541
172 4V5Z 83 B3 60S Ribosomal protein L39e 9612