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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 240 Members. Sequence cutoff: 50% Cluster size: 118 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 30 2 50S ribosomal protein L39e 272569  
2 1VQO 30 2 50S ribosomal protein L39e 2238  
3 1VQ8 30 2 50S ribosomal protein L39e 2238  
4 1S72 30 2 50S ribosomal protein L39e 2238  
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238  
6 1YHQ 30 2 50S ribosomal protein L39e 2238  
7 1VQP 30 2 50S ribosomal protein L39e 2238  
8 1VQM 30 2 50S ribosomal protein L39e 2238  
9 3CC2 28 2 50S ribosomal protein L39e 2238  
10 1VQL 30 2 50S ribosomal protein L39e 2238  
11 1VQK 30 2 50S ribosomal protein L39e 2238  
12 1VQN 31 2 50S ribosomal protein L39e 2238  
13 1YIJ 30 2 50S ribosomal protein L39e 2238  
14 1YI2 30 2 50S ribosomal protein L39e 2238  
15 1VQ9 30 2 50S ribosomal protein L39e 2238  
16 1VQ7 30 2 50S ribosomal protein L39e 2238  
17 3CCM 28 2 50S ribosomal protein L39e 272569  
18 1VQ5 30 2 50S ribosomal protein L39e 2238  
19 3CCJ 28 2 50S ribosomal protein L39e 272569  
20 3CC7 28 2 50S ribosomal protein L39e 2238  
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
22 3CCE 28 2 50S ribosomal protein L39e 272569  
23 3G6E 29 2 50S ribosomal protein L39e 2238  
24 3CPW 29 1 50S ribosomal protein L39e 272569  
25 3CCU 28 2 50S ribosomal protein L39e 272569  
26 1VQ6 31 2 50S ribosomal protein L39e 2238  
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238  
28 3CCL 28 2 50S ribosomal protein L39e 272569  
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
30 1YJ9 30 2 50S ribosomal protein L39e 2238  
31 3CD6 28 2 50S ribosomal protein L39e 272569  
32 3CCV 28 2 50S ribosomal protein L39e 272569  
33 3CC4 28 2 50S ribosomal protein L39e 272569  
34 2OTL 29 2 50S ribosomal protein L39e 2238  
35 3G71 29 2 50S ribosomal protein L39e 2238  
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238  
37 1VQ4 30 2 50S ribosomal protein L39e 2238  
38 1YJN 30 2 50S ribosomal protein L39e 2238  
39 3CMA 28 2 50S ribosomal protein L39e 2238  
40 3CCS 28 2 50S ribosomal protein L39e 272569  
41 3CCQ 28 2 50S ribosomal protein L39e 272569  
42 3I56 28 2 50S ribosomal protein L39e 2238  
43 3CCR 28 2 50S ribosomal protein L39e 272569  
44 2OTJ 29 2 50S ribosomal protein L39e 2238  
45 4V88 75 Bl, Dl 60S ribosomal protein L39 559292  
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238  
47 3OW2 29 1 50S ribosomal protein L39e 2238  
48 4U4R 75 O9, o9 60S ribosomal protein L39 559292  
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238  
50 1QVG 30 1 50S ribosomal protein L39e 2238  
51 3CME 28 2 50S ribosomal protein L39e 2238  
52 2QEX 29 2 50S ribosomal protein L39e 2238  
53 4U3U 75 O9, o9 60S ribosomal protein L39 559292  
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238  
55 4U3M 75 O9, o9 60S ribosomal protein L39 559292  
56 1N8R 29 3 50S ribosomal protein L39e 2238  
57 4U3N 75 O9, o9 60S ribosomal protein L39 559292  
58 1Q81 30 3 50S ribosomal protein L39e 2238  
59 1Q82 30 3 50S ribosomal protein L39e 2238  
60 1QVF 30 1 50S ribosomal protein L39e 2238  
61 4U52 75 O9, o9 60S ribosomal protein L39 559292  
62 4U4Q 75 O9, o9 60S ribosomal protein L39 559292  
63 1NJI 29 3 50S ribosomal protein L39e 2238  
64 4U6F 75 O9, o9 60S ribosomal protein L39 559292  
65 4U4U 75 O9, o9 60S ribosomal protein L39 559292  
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238  
67 4U4Z 75 O9, o9 60S ribosomal protein L39 559292  
68 4U4Y 75 O9, o9 60S ribosomal protein L39 559292  
69 4U4N 75 O9, o9 60S ribosomal protein L39 559292  
70 4U55 75 O9, o9 60S ribosomal protein L39 559292  
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238  
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238  
73 3I55 29 2 50S ribosomal protein L39e 2238  
74 4U51 75 O9, o9 60S ribosomal protein L39 559292  
75 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238  
76 4U53 75 O9, o9 60S ribosomal protein L39 559292  
77 1Q86 30 3 50S ribosomal protein L39e 2238  
78 4U50 75 O9, o9 60S ribosomal protein L39 559292  
79 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238  
80 3G4S 29 2 50S ribosomal protein L39e 2238  
81 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238  
82 4U56 75 O9, o9 60S ribosomal protein L39 559292  
83 2QA4 30 2 50S ribosomal protein L39e 2238  
84 1Q7Y 30 3 50S ribosomal protein L39e 2238  
85 4U4O 75 O9, o9 60S ribosomal protein L39 559292  
86 4V8P 3 AB, DB, FB, HB RPL39 5911  
87 4V7R 60 Be, De 60S ribosomal protein L39 4932  
88 3J92 37 l eL39 9986  
89 3J7O 40 l Ribosomal protein eL39 9823  
90 3J7P 41 l Ribosomal protein eL39 9823  
91 3J7Q 40 l Ribosomal protein eL39 9823  
92 3J7R 40 l Ribosomal protein eL39 9823  
93 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986  
94 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986  
95 3J79 41 e 60S ribosomal protein eL39 36329  
96 3J77 39 89 60S ribosomal protein L39 4932  
97 3J78 39 89 60S ribosomal protein L39 4932  
98 3J6X 41 79 60S ribosomal protein L39 580240  
99 3J6Y 41 79 60S ribosomal protein L39 580240  
100 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986  
101 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985  
102 4V7F 39 j 60S ribosomal protein L39 4932  
103 4V7E 59 Cl 60S ribosomal protein L39E 4565  
104 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932  
105 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932  
106 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190  
107 4V6W 73 Cl 60S ribosomal protein L39 7227  
108 4V6X 73 Cl 60S ribosomal protein L39 9606  
109 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431  
110 4V6U 36 Bf 50S ribosomal protein L39e 186497  
111 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 559292  
112 4ADX 3 2 RPL39E 187420  
113 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932  
114 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932  
115 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932  
116 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565  
117 4V7H 21 B1 60S ribosomal protein L39 5541  
118 4V5Z 83 B3 60S Ribosomal protein L39e 9615  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 649
95% 36 68 467
90% 36 68 488
70% 36 68 525
50% 36 118 239
40% 36 118 265
30% 38 325 49
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48618
95% 1 1 34064
90% 1 1 32571
70% 36 68 518
50% 36 116 246
40% 36 116 273
30% 36 116 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 411
90% 36 74 434
70% 36 74 464
50% 36 74 509
40% 36 74 549
30% 37 317 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 409
90% 36 74 432
70% 36 74 462
50% 36 76 489
40% 36 76 528
30% 36 78 513
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 528
50% 36 70 558
40% 36 70 592
30% 36 70 593
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1685
95% 36 68 465
90% 36 68 486
70% 36 68 523
50% 36 68 591
40% 36 70 590
30% 36 71 574
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 471
90% 36 68 493
70% 36 68 530
50% 36 70 561
40% 36 70 596
30% 36 71 576
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 334
95% 36 68 463
90% 36 68 484
70% 36 68 521
50% 36 68 588
40% 36 68 621
30% 36 119 283
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 414
90% 36 74 437
70% 36 74 467
50% 36 76 490
40% 36 78 507
30% 37 279 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 413
90% 36 74 436
70% 36 74 466
50% 36 125 225
40% 36 125 250
30% 36 125 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 311
95% 34 70 448
90% 34 70 468
70% 34 70 503
50% 34 70 562
40% 34 70 597
30% 34 70 595
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 415
90% 36 74 438
70% 36 74 468
50% 36 74 511
40% 36 74 551
30% 36 74 546
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 464
90% 36 68 485
70% 36 68 522
50% 36 68 589
40% 36 70 589
30% 36 71 573
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 473
90% 36 68 495
70% 36 68 532
50% 36 68 596
40% 36 68 627
30% 36 68 619
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51587
95% 3 5 11415
90% 3 5 11228
70% 3 5 10606
50% 3 5 9527
40% 3 5 8694
30% 3 5 7615
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57230
95% 1 1 39876
90% 1 1 38130
70% 3 21 2272
50% 7 30 1549
40% 7 74 418
30% 26 97 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 475
90% 36 68 497
70% 36 68 534
50% 36 69 577
40% 36 69 614
30% 36 69 610
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58512
95% 36 68 476
90% 36 68 498
70% 36 68 535
50% 36 118 240
40% 36 118 266
30% 36 118 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 494
70% 36 68 531
50% 36 68 595
40% 36 68 626
30% 36 117 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 462
90% 36 68 483
70% 36 68 520
50% 36 68 587
40% 36 117 270
30% 38 320 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1667
95% 35 67 479
90% 35 67 501
70% 35 67 541
50% 35 115 249
40% 35 117 268
30% 35 117 287
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42865
95% 36 74 404
90% 36 74 427
70% 36 74 458
50% 36 74 502
40% 36 122 257
30% 36 122 274
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7876
95% 36 74 407
90% 36 74 430
70% 36 74 461
50% 36 74 504
40% 36 76 526
30% 36 77 519
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 410
90% 36 74 433
70% 36 74 463
50% 36 74 507
40% 36 122 260
30% 36 122 276
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1697
95% 3 21 2218
90% 36 68 490
70% 36 68 527
50% 51 95 303
40% 58 105 291
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50604
95% 1 1 35177
90% 1 7 8099
70% 3 27 1670
50% 36 74 508
40% 36 78 504
30% 36 78 514
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 412
90% 36 74 435
70% 36 74 465
50% 36 74 510
40% 37 77 517
30% 37 78 515
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.