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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 264 Members. Sequence cutoff: 40% Cluster size: 121 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 30 2 50S ribosomal protein L39e 272569  
2 1VQO 30 2 50S ribosomal protein L39e 2238  
3 1VQ8 30 2 50S ribosomal protein L39e 2238  
4 1S72 30 2 50S ribosomal protein L39e 2238  
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238  
6 1YHQ 30 2 50S ribosomal protein L39e 2238  
7 1VQP 30 2 50S ribosomal protein L39e 2238  
8 1VQM 30 2 50S ribosomal protein L39e 2238  
9 3CC2 28 2 50S ribosomal protein L39e 2238  
10 1VQL 30 2 50S ribosomal protein L39e 2238  
11 1VQK 30 2 50S ribosomal protein L39e 2238  
12 1VQN 31 2 50S ribosomal protein L39e 2238  
13 1YIJ 30 2 50S ribosomal protein L39e 2238  
14 1YI2 30 2 50S ribosomal protein L39e 2238  
15 1VQ9 30 2 50S ribosomal protein L39e 2238  
16 1VQ7 30 2 50S ribosomal protein L39e 2238  
17 3CCM 28 2 50S ribosomal protein L39e 272569  
18 1VQ5 30 2 50S ribosomal protein L39e 2238  
19 3CCJ 28 2 50S ribosomal protein L39e 272569  
20 3CC7 28 2 50S ribosomal protein L39e 2238  
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
22 3CCE 28 2 50S ribosomal protein L39e 272569  
23 3G6E 29 2 50S ribosomal protein L39e 2238  
24 3CPW 29 1 50S ribosomal protein L39e 2238  
25 3CCU 28 2 50S ribosomal protein L39e 272569  
26 1VQ6 31 2 50S ribosomal protein L39e 2238  
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238  
28 3CCL 28 2 50S ribosomal protein L39e 272569  
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
30 1YJ9 30 2 50S ribosomal protein L39e 2238  
31 3CD6 28 2 50S ribosomal protein L39e 272569  
32 3CCV 28 2 50S ribosomal protein L39e 272569  
33 3CC4 28 2 50S ribosomal protein L39e 272569  
34 2OTL 29 2 50S ribosomal protein L39e 2238  
35 3G71 29 2 50S ribosomal protein L39e 2238  
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238  
37 1VQ4 30 2 50S ribosomal protein L39e 2238  
38 1YJN 30 2 50S ribosomal protein L39e 2238  
39 3CMA 28 2 50S ribosomal protein L39e 2238  
40 3CCS 28 2 50S ribosomal protein L39e 272569  
41 3CCQ 28 2 50S ribosomal protein L39e 272569  
42 3I56 28 2 50S ribosomal protein L39e 2238  
43 3CCR 28 2 50S ribosomal protein L39e 272569  
44 2OTJ 29 2 50S ribosomal protein L39e 2238  
45 4V88 75 Bl, Dl 60S ribosomal protein L39 559292  
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238  
47 3OW2 29 1 50S ribosomal protein L39e 2238  
48 4U4R 75 O9, o9 60S ribosomal protein L39 559292  
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238  
50 1QVG 30 1 50S ribosomal protein L39e 2238  
51 3CME 28 2 50S ribosomal protein L39e 2238  
52 2QEX 29 2 50S ribosomal protein L39e 2238  
53 4U3U 75 O9, o9 60S ribosomal protein L39 559292  
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238  
55 4U3M 75 O9, o9 60S ribosomal protein L39 559292  
56 1N8R 29 3 50S ribosomal protein L39e 2238  
57 4U3N 75 O9, o9 60S ribosomal protein L39 559292  
58 1Q81 30 3 50S ribosomal protein L39e 2238  
59 1Q82 30 3 50S ribosomal protein L39e 2238  
60 1QVF 30 1 50S ribosomal protein L39e 2238  
61 4U52 75 O9, o9 60S ribosomal protein L39 559292  
62 4U4Q 75 O9, o9 60S ribosomal protein L39 559292  
63 1NJI 29 3 50S ribosomal protein L39e 2238  
64 4U6F 75 O9, o9 60S ribosomal protein L39 559292  
65 4U4U 75 O9, o9 60S ribosomal protein L39 559292  
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238  
67 4U4Z 75 O9, o9 60S ribosomal protein L39 559292  
68 4U4Y 75 O9, o9 60S ribosomal protein L39 559292  
69 4U4N 75 O9, o9 60S ribosomal protein L39 559292  
70 4U55 75 O9, o9 60S ribosomal protein L39 559292  
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238  
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238  
73 3I55 29 2 50S ribosomal protein L39e 2238  
74 4U51 75 O9, o9 60S ribosomal protein L39 559292  
75 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238  
76 4U53 75 O9, o9 60S ribosomal protein L39 559292  
77 1Q86 30 3 50S ribosomal protein L39e 2238  
78 4U50 75 O9, o9 60S ribosomal protein L39 559292  
79 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238  
80 3G4S 29 2 50S ribosomal protein L39e 2238  
81 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238  
82 4U56 75 O9, o9 60S ribosomal protein L39 559292  
83 2QA4 30 2 50S ribosomal protein L39e 2238  
84 1Q7Y 30 3 50S ribosomal protein L39e 2238  
85 4U4O 75 O9, o9 60S ribosomal protein L39 559292  
86 4V8P 3 AB, DB, FB, HB RPL39 5911  
87 4V7R 60 Be, De 60S ribosomal protein L39 4932  
88 3J92 37 l eL39 9986  
89 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986  
90 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986  
91 4V3P 59 Lo Ribosomal protein L39 4565  
92 3J7O 40 l Ribosomal protein eL39 9823  
93 3J7P 41 l Ribosomal protein eL39 9823  
94 3J7Q 40 l Ribosomal protein eL39 9823  
95 3J7R 40 l Ribosomal protein eL39 9823  
96 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986  
97 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986  
98 3J79 41 e 60S ribosomal protein eL39 36329  
99 3J77 39 89 60S ribosomal protein L39 4932  
100 3J78 39 89 60S ribosomal protein L39 4932  
101 3J6X 41 79 60S ribosomal protein L39 580240  
102 3J6Y 41 79 60S ribosomal protein L39 580240  
103 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986  
104 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985  
105 4V7F 39 j 60S ribosomal protein L39 4932  
106 4V7E 59 Cl 60S ribosomal protein L39E 4565  
107 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932  
108 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932  
109 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190  
110 4V6W 73 Cl 60S ribosomal protein L39 7227  
111 4V6X 73 Cl 60S ribosomal protein L39 9606  
112 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431  
113 4V6U 36 Bf 50S ribosomal protein L39e 186497  
114 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 559292  
115 4ADX 3 2 RPL39E 187420  
116 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932  
117 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932  
118 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932  
119 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565  
120 4V7H 21 B1 60S ribosomal protein L39 5541  
121 4V5Z 83 B3 60S Ribosomal protein L39e 9615  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 661
95% 36 68 472
90% 36 68 494
70% 36 68 534
50% 36 121 237
40% 36 121 263
30% 41 334 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49266
95% 1 1 34547
90% 1 1 33021
70% 36 68 526
50% 36 119 242
40% 36 119 270
30% 36 119 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 439
70% 36 74 468
50% 36 74 515
40% 36 74 556
30% 40 326 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 437
70% 36 74 466
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 474
90% 36 68 497
70% 36 68 537
50% 36 70 573
40% 36 70 606
30% 36 70 607
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1711
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 607
40% 36 70 604
30% 36 71 587
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 476
90% 36 68 499
70% 36 68 539
50% 36 70 577
40% 36 70 611
30% 36 71 590
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 468
90% 36 68 490
70% 36 68 530
50% 36 68 604
40% 36 68 638
30% 36 122 278
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 442
70% 36 74 472
50% 36 76 495
40% 36 78 514
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 452
90% 34 70 473
70% 34 70 509
50% 34 70 578
40% 34 70 612
30% 34 70 610
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 443
70% 36 74 473
50% 36 74 519
40% 36 74 558
30% 36 74 554
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 605
40% 36 70 603
30% 36 71 586
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 611
40% 36 68 643
30% 36 68 637
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52248
95% 3 5 11516
90% 3 5 11330
70% 3 5 10718
50% 3 5 9629
40% 3 5 8789
30% 3 5 7691
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57922
95% 1 1 40373
90% 1 1 38587
70% 3 21 2305
50% 7 30 1572
40% 7 77 413
30% 26 100 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 69 595
40% 36 69 628
30% 36 69 625
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59211
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 121 238
40% 36 121 264
30% 36 121 281
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 500
70% 36 68 540
50% 36 68 610
40% 36 68 642
30% 36 120 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 467
90% 36 68 489
70% 36 68 529
50% 36 68 603
40% 36 120 267
30% 41 329 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1694
95% 36 68 464
90% 36 68 487
70% 36 68 525
50% 36 119 241
40% 36 121 262
30% 36 121 279
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43475
95% 36 74 407
90% 36 74 431
70% 36 74 462
50% 36 74 509
40% 36 125 252
30% 36 125 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7974
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 74 511
40% 36 76 530
30% 36 77 524
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 438
70% 36 74 467
50% 36 74 513
40% 36 126 251
30% 36 126 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 3 21 2254
90% 36 68 496
70% 36 68 536
50% 51 95 309
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51264
95% 1 1 35664
90% 1 7 8187
70% 3 27 1696
50% 36 74 514
40% 36 79 502
30% 36 79 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 440
70% 36 74 469
50% 36 74 518
40% 37 77 523
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.