Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 865
95 % 35 68 698
90 % 35 68 728
70 % 35 68 780
50 % 35 180 201
40 % 43 539 20
30 % 43 539 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61028
95 % 1 1 42582
90 % 1 1 40466
70 % 35 68 771
50 % 35 176 205
40 % 35 176 228
30 % 35 176 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 447
95 % 35 74 619
90 % 35 74 647
70 % 35 74 690
50 % 35 74 743
40 % 35 74 778
30 % 42 519 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 445
95 % 35 74 617
90 % 35 74 645
70 % 35 74 687
50 % 35 76 718
40 % 35 76 753
30 % 35 79 717
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 513
95 % 35 68 700
90 % 35 68 731
70 % 35 68 783
50 % 35 70 793
40 % 35 70 830
30 % 35 70 817
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2259
95 % 35 68 697
90 % 35 68 727
70 % 35 68 778
50 % 35 68 822
40 % 35 72 805
30 % 35 72 796
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 514
95 % 35 68 702
90 % 35 68 733
70 % 35 68 785
50 % 35 70 794
40 % 35 70 831
30 % 35 71 807
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 523
95 % 35 68 695
90 % 35 68 725
70 % 35 68 775
50 % 35 68 819
40 % 35 68 856
30 % 35 179 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 452
95 % 35 74 623
90 % 35 74 651
70 % 35 74 697
50 % 35 76 723
40 % 35 78 734
30 % 42 422 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 451
95 % 35 74 622
90 % 35 74 650
70 % 35 74 695
50 % 35 183 199
40 % 35 184 217
30 % 35 184 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 483
95 % 33 70 668
90 % 33 70 694
70 % 33 70 746
50 % 33 70 795
40 % 33 70 832
30 % 33 70 819
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 453
95 % 35 74 624
90 % 35 74 652
70 % 35 74 698
50 % 35 74 748
40 % 42 384 58
30 % 42 410 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 510
95 % 35 68 696
90 % 35 68 726
70 % 35 68 776
50 % 35 68 820
40 % 35 70 828
30 % 35 71 805
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 516
95 % 35 68 704
90 % 35 68 735
70 % 35 68 787
50 % 35 68 827
40 % 35 68 860
30 % 35 68 844
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64470
95 % 3 5 14502
90 % 3 5 14231
70 % 3 5 13370
50 % 3 5 11887
40 % 3 5 10785
30 % 3 5 9353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70904
95 % 1 1 49189
90 % 1 1 46695
70 % 3 21 2958
50 % 7 30 1979
40 % 7 134 287
30 % 26 157 261
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 517
95 % 35 68 705
90 % 35 68 736
70 % 35 68 788
50 % 35 69 809
40 % 35 69 844
30 % 35 69 833
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72343
95 % 35 68 706
90 % 35 68 737
70 % 35 68 789
50 % 35 177 203
40 % 35 177 225
30 % 35 177 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 515
95 % 35 68 703
90 % 35 68 734
70 % 35 68 786
50 % 35 68 826
40 % 35 68 859
30 % 35 173 244
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 509
95 % 35 68 694
90 % 35 68 723
70 % 35 68 773
50 % 35 68 818
40 % 35 178 222
30 % 43 530 35
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2242
95 % 35 68 692
90 % 35 68 721
70 % 35 68 770
50 % 35 175 204
40 % 35 177 224
30 % 35 177 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54106
95 % 35 74 609
90 % 35 74 639
70 % 35 74 683
50 % 35 74 736
40 % 35 184 215
30 % 35 184 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10234
95 % 35 74 613
90 % 35 74 643
70 % 35 74 685
50 % 35 74 738
40 % 35 76 751
30 % 36 78 727
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 446
95 % 35 74 618
90 % 35 74 646
70 % 35 74 688
50 % 35 74 741
40 % 36 184 216
30 % 36 184 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2272
95 % 3 21 2920
90 % 35 68 730
70 % 35 68 782
50 % 50 105 351
40 % 57 124 285
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63338
95 % 1 1 43875
90 % 1 7 10352
70 % 3 27 2210
50 % 35 74 742
40 % 35 79 723
30 % 35 79 719
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 449
95 % 35 74 620
90 % 35 74 648
70 % 35 74 693
50 % 35 74 747
40 % 36 77 745
30 % 36 78 731

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CC7 28 2 50S ribosomal protein L39e 2238
20 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
21 3CCE 28 2 50S ribosomal protein L39e 2238
22 3G6E 29 2 50S ribosomal protein L39e 2238
23 3CPW 29 1 50S ribosomal protein L39e 2238
24 3CCU 28 2 50S ribosomal protein L39e 2238
25 1VQ6 31 2 50S ribosomal protein L39e 2238
26 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
27 3CCL 28 2 50S ribosomal protein L39e 2238
28 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
29 1YJ9 30 2 50S ribosomal protein L39e 2238
30 3CD6 28 2 50S ribosomal protein L39e 2238
31 3CCV 28 2 50S ribosomal protein L39e 2238
32 3CC4 28 2 50S ribosomal protein L39e 2238
33 2OTL 29 2 50S ribosomal protein L39e 2238
34 3G71 29 2 50S ribosomal protein L39e 2238
35 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
36 1VQ4 30 2 50S ribosomal protein L39e 2238
37 1YJN 30 2 50S ribosomal protein L39e 2238
38 3CMA 28 2 50S ribosomal protein L39e 2238
39 3CCS 28 2 50S ribosomal protein L39e 2238
40 3CCQ 28 2 50S ribosomal protein L39e 2238
41 3I56 28 2 50S ribosomal protein L39e 2238
42 3CCR 28 2 50S ribosomal protein L39e 2238
43 2OTJ 29 2 50S ribosomal protein L39e 2238
44 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
45 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
46 3OW2 29 1 50S ribosomal protein L39e 2238
47 4U4R 75 O9, o9 60S ribosomal protein L39 4932
48 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
49 1QVG 30 1 50S ribosomal protein L39e 2238
50 3CME 28 2 50S ribosomal protein L39e 2238
51 2QEX 29 2 50S ribosomal protein L39e 2238
52 4U3U 75 O9, o9 60S ribosomal protein L39 4932
53 5TBW 40 AM, DN 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 5DAT 75 O9, o9 60S ribosomal protein L39 4932
74 3I55 29 2 50S ribosomal protein L39e 2238
75 5I4L 75 O9, o9 60S ribosomal protein L39 4932
76 4U51 75 O9, o9 60S ribosomal protein L39 4932
77 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
78 4U53 75 O9, o9 60S ribosomal protein L39 4932
79 1Q86 30 3 50S ribosomal protein L39e 2238
80 4U50 75 O9, o9 60S ribosomal protein L39 4932
81 5LYB 75 O9, o9 60S ribosomal protein L39 4932
82 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
83 3G4S 29 2 50S ribosomal protein L39e 2238
84 3CCJ 28 2 50S ribosomal protein L39e 2238
85 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
86 4U56 75 O9, o9 60S ribosomal protein L39 4932
87 2QA4 30 2 50S ribosomal protein L39e 2238
88 5TGA 75 O9, o9 60S ribosomal protein L39 4932
89 5MEI 41 AM, DN 60S ribosomal protein L39 4932
90 1Q7Y 30 3 50S ribosomal protein L39e 2238
91 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
92 4U4O 75 O9, o9 60S ribosomal protein L39 4932
93 5DGV 75 O9, o9 60S ribosomal protein L39 4932
94 5DGE 75 O9, o9 60S ribosomal protein L39 4932
95 4V8P 3 AB, DB, FB, HB RPL39 5911
96 5FCI 75 O9, o9 60S ribosomal protein L39 4932
97 5DC3 75 O9, o9 60S ribosomal protein L39 4932
98 5DGF 75 O9, o9 60S ribosomal protein L39 4932
99 5TGM 75 O9, o9 60S ribosomal protein L39 4932
100 4V7R 60 Be, De 60S ribosomal protein L39 4932
101 5XY3 40 l 60S ribosomal protein L39, putative 5722
102 5XXB 40 k Ribosomal protein eL39 5811
103 5UMD 41 e 60S ribosomal protein L39 5833
104 5MC6 52 AL 60S ribosomal protein L39 4932
105 5H4P 39 l 60S ribosomal protein L39 4932
106 5M1J 59 l5 60S ribosomal protein L39 4932
107 5LZS 37 l Uncharacterized protein 9986
108 5LZT 37 l eL39 9986
109 5LZU 37 l eL39 9986
110 5LZV 37 l eL39 9986
111 5LZW 37 l eL39 9986
112 5LZX 37 l eL39 9986
113 5LZY 37 l eL39 9986
114 5LZZ 37 l eL39 9986
115 5T62 41 y 60S ribosomal protein L39 4932
116 5T6R 40 y 60S ribosomal protein L39 4932
117 5T5H 40 q Ribosomal protein L39 5693
118 5T2A 41 o eL39 5661
119 5T2C 26 f 60S ribosomal protein L39 9606
120 5LKS 40 Ll 60S ribosomal protein L39 9606
121 5JUO 43 QA eL39 (yeast L39) 4932
122 5JUP 43 QA eL39 (yeast L39) 4932
123 5JUS 43 QA eL39 (yeast L39) 4932
124 5JUT 43 QA eL39 (yeast L39) 4932
125 5JUU 43 QA eL39 (yeast L39) 4932
126 5JCS 20 l 60S ribosomal protein L39 4932
127 5IT7 40 ll 60S ribosomal protein L39 4932
128 3JCT 38 l 60S ribosomal protein L39 4932
129 3JCS 46 l ribosomal protein L39e 5661
130 5GAK 34 n 60S ribosomal protein L39 4932
131 5FL8 36 l 60S ribosomal protein L39 4932
132 5APN 40 l 60S ribosomal protein L39 4932
133 5APO 40 l 60S ribosomal protein L39 4932
134 3JBN 49 Ae 60S ribosomal protein eL39 5833
135 3JBO 52 Ae 60S ribosomal protein eL39 5833
136 3JBP 49 Ae 60S ribosomal protein eL39 5833
137 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
138 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
139 3JAG 37 l eL39 9986
140 3JAH 37 l eL39 9986
141 3JAI 37 l eL39 9986
142 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
143 5AJ0 40 Al 60S ribosomal protein L39 9606
144 3J92 37 l eL39 9986
145 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
146 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
147 4V3P 59 Lo Ribosomal protein L39 4565
148 3J7O 40 l Ribosomal protein eL39 9823
149 3J7P 41 l Ribosomal protein eL39 9823
150 3J7Q 40 l Ribosomal protein eL39 9823
151 3J7R 40 l Ribosomal protein eL39 9823
152 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
153 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
154 3J79 41 e 60S ribosomal protein eL39 5833
155 3J77 39 89 60S ribosomal protein L39 4932
156 3J78 39 89 60S ribosomal protein L39 4932
157 3J6X 41 79 60S ribosomal protein L39 4932
158 3J6Y 41 79 60S ribosomal protein L39 4932
159 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
160 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
161 4V7F 39 j 60S ribosomal protein L39 4932
162 4V7E 59 Cl 60S ribosomal protein L39E 4565
163 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
164 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
165 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
166 4V6W 73 Cl 60S ribosomal protein L39 7227
167 4V6X 73 Cl 60S ribosomal protein L39 9606
168 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
169 4V6U 36 Bf 50S ribosomal protein L39e 2261
170 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
171 4ADX 3 2 RPL39E 145262
172 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
173 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
174 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
175 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
176 4V7H 21 B1 60S ribosomal protein L39 5541
177 4V5Z 83 B3 60S Ribosomal protein L39e 9612