Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 749
95 % 36 68 531
90 % 36 68 559
70 % 36 68 612
50 % 36 144 215
40 % 36 144 245
30 % 44 431 32
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54678
95 % 1 1 38174
90 % 1 1 36367
70 % 36 68 606
50 % 36 139 228
40 % 36 139 259
30 % 36 139 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 465
90 % 36 74 492
70 % 36 74 537
50 % 36 74 626
40 % 36 74 670
30 % 43 420 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 463
90 % 36 74 490
70 % 36 74 534
50 % 36 76 604
40 % 36 76 647
30 % 36 78 627
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 533
90 % 36 68 562
70 % 36 68 614
50 % 36 70 677
40 % 36 70 719
30 % 36 70 724
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1948
95 % 36 68 530
90 % 36 68 558
70 % 36 68 611
50 % 36 68 705
40 % 36 70 716
30 % 36 71 707
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 534
90 % 36 68 564
70 % 36 68 616
50 % 36 70 679
40 % 36 70 721
30 % 36 71 710
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 367
95 % 36 68 528
90 % 36 68 556
70 % 36 68 609
50 % 36 68 702
40 % 36 68 738
30 % 36 143 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 76 606
40 % 36 78 622
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 148 213
40 % 36 148 239
30 % 36 148 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 344
95 % 34 70 510
90 % 34 70 536
70 % 34 70 588
50 % 34 70 680
40 % 34 70 722
30 % 34 70 725
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 472
90 % 36 74 500
70 % 36 74 545
50 % 36 74 633
40 % 36 74 675
30 % 36 74 672
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 557
70 % 36 68 610
50 % 36 68 703
40 % 36 70 715
30 % 36 71 706
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 536
90 % 36 68 566
70 % 36 68 618
50 % 36 68 707
40 % 36 68 741
30 % 36 68 744
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57836
95 % 3 5 12901
90 % 3 5 12660
70 % 3 5 11920
50 % 3 5 10681
40 % 3 5 9738
30 % 3 5 8476
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63850
95 % 1 1 44310
90 % 1 1 42217
70 % 3 21 2593
50 % 7 30 1737
40 % 7 97 360
30 % 26 120 314
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 568
70 % 36 68 620
50 % 36 69 693
40 % 36 69 732
30 % 36 69 739
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65195
95 % 36 68 540
90 % 36 68 569
70 % 36 68 621
50 % 36 141 222
40 % 36 141 255
30 % 36 141 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 535
90 % 36 68 565
70 % 36 68 617
50 % 36 68 706
40 % 36 68 740
30 % 36 138 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 527
90 % 36 68 555
70 % 36 68 608
50 % 36 68 701
40 % 36 143 247
30 % 44 426 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1924
95 % 36 68 525
90 % 36 68 553
70 % 36 68 605
50 % 36 139 227
40 % 36 141 254
30 % 36 141 262
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48358
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 618
40 % 36 148 237
30 % 36 148 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8996
95 % 36 74 458
90 % 36 74 486
70 % 36 74 532
50 % 36 74 621
40 % 36 76 646
30 % 36 77 635
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 464
90 % 36 74 491
70 % 36 74 535
50 % 36 74 624
40 % 37 148 238
30 % 37 148 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1958
95 % 3 21 2541
90 % 36 68 561
70 % 36 68 613
50 % 51 96 348
40 % 58 110 309
30 % 58 112 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56812
95 % 1 1 39361
90 % 1 7 9158
70 % 3 27 1900
50 % 36 74 625
40 % 36 79 609
30 % 36 79 616
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 74 629
40 % 37 77 633
30 % 37 78 630

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 3I55 29 2 50S ribosomal protein L39e 2238
74 5I4L 75 O9, o9 60S ribosomal protein L39 4932
75 4U51 75 O9, o9 60S ribosomal protein L39 4932
76 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
77 4U53 75 O9, o9 60S ribosomal protein L39 4932
78 1Q86 30 3 50S ribosomal protein L39e 2238
79 4U50 75 O9, o9 60S ribosomal protein L39 4932
80 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
81 3G4S 29 2 50S ribosomal protein L39e 2238
82 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
83 4U56 75 O9, o9 60S ribosomal protein L39 4932
84 2QA4 30 2 50S ribosomal protein L39e 2238
85 1Q7Y 30 3 50S ribosomal protein L39e 2238
86 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
87 4U4O 75 O9, o9 60S ribosomal protein L39 4932
88 4V8P 3 AB, DB, FB, HB RPL39 5911
89 5FCI 75 O9, o9 60S ribosomal protein L39 4932
90 5DC3 75 O9, o9 60S ribosomal protein L39 4932
91 4V7R 60 Be, De 60S ribosomal protein L39 4932
92 5IT7 40 ll 60S ribosomal protein L39 4932
93 3JCT 38 l 60S ribosomal protein L39 4932
94 5GAK 34 n 60S ribosomal protein L39 4932
95 5FL8 36 l 60S ribosomal protein L39 4932
96 5APN 40 l 60S ribosomal protein L39 4932
97 5APO 40 l 60S ribosomal protein L39 4932
98 3JBN 49 Ae 60S ribosomal protein eL39 5833
99 3JBO 52 Ae 60S ribosomal protein eL39 5833
100 3JBP 49 Ae 60S ribosomal protein eL39 5833
101 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
102 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
103 3JAG 37 l eL39 9986
104 3JAH 37 l eL39 9986
105 3JAI 37 l eL39 9986
106 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
107 5AJ0 40 Al 60S ribosomal protein L39 9606
108 3J92 37 l eL39 9986
109 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
110 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
111 4V3P 59 Lo Ribosomal protein L39 4565
112 3J7O 40 l Ribosomal protein eL39 9823
113 3J7P 41 l Ribosomal protein eL39 9823
114 3J7Q 40 l Ribosomal protein eL39 9823
115 3J7R 40 l Ribosomal protein eL39 9823
116 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
117 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
118 3J79 41 e 60S ribosomal protein eL39 5833
119 3J77 39 89 60S ribosomal protein L39 4932
120 3J78 39 89 60S ribosomal protein L39 4932
121 3J6X 41 79 60S ribosomal protein L39 4932
122 3J6Y 41 79 60S ribosomal protein L39 4932
123 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
124 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
125 4V7F 39 j 60S ribosomal protein L39 4932
126 4V7E 59 Cl 60S ribosomal protein L39E 4565
127 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
128 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
129 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
130 4V6W 73 Cl 60S ribosomal protein L39 7227
131 4V6X 73 Cl 60S ribosomal protein L39 9606
132 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
133 4V6U 36 Bf 50S ribosomal protein L39e 2261
134 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
135 4ADX 3 2 RPL39E 145262
136 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
137 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
138 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
139 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
140 4V7H 21 B1 60S ribosomal protein L39 5541
141 4V5Z 83 B3 60S Ribosomal protein L39e 9612