Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 823
95 % 36 68 652
90 % 36 68 679
70 % 36 68 722
50 % 36 175 200
40 % 36 175 220
30 % 44 509 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58425
95 % 1 1 40724
90 % 1 1 38770
70 % 36 68 714
50 % 36 171 205
40 % 36 171 229
30 % 36 171 235
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 576
90 % 36 74 606
70 % 36 74 637
50 % 36 74 685
40 % 36 74 724
30 % 43 491 36
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 574
90 % 36 74 604
70 % 36 74 634
50 % 36 76 659
40 % 36 76 700
30 % 36 79 670
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 463
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 70 746
40 % 36 70 784
30 % 36 70 779
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 651
90 % 36 68 677
70 % 36 68 720
50 % 36 68 773
40 % 36 72 751
30 % 36 72 747
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 465
95 % 36 68 656
90 % 36 68 683
70 % 36 68 728
50 % 36 70 748
40 % 36 70 786
30 % 36 71 761
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 478
95 % 36 68 649
90 % 36 68 675
70 % 36 68 717
50 % 36 68 770
40 % 36 68 806
30 % 36 174 228
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 419
95 % 36 74 581
90 % 36 74 610
70 % 36 74 643
50 % 36 76 662
40 % 36 78 677
30 % 43 399 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 579
90 % 36 74 609
70 % 36 74 642
50 % 36 179 194
40 % 36 179 212
30 % 36 179 224
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 444
95 % 34 70 627
90 % 34 70 654
70 % 34 70 697
50 % 34 70 749
40 % 34 70 789
30 % 34 70 783
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 582
90 % 36 74 611
70 % 36 74 644
50 % 36 74 690
40 % 36 74 727
30 % 36 74 725
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 461
95 % 36 68 650
90 % 36 68 676
70 % 36 68 718
50 % 36 68 771
40 % 36 70 781
30 % 36 71 758
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 685
70 % 36 68 730
50 % 36 68 777
40 % 36 68 811
30 % 36 68 804
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61743
95 % 3 5 13809
90 % 3 5 13556
70 % 3 5 12721
50 % 3 5 11366
40 % 3 5 10309
30 % 3 5 8948
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68007
95 % 1 1 47126
90 % 1 1 44816
70 % 3 21 2821
50 % 7 30 1890
40 % 7 128 296
30 % 26 151 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 686
70 % 36 68 733
50 % 36 69 758
40 % 36 69 799
30 % 36 69 795
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69405
95 % 36 68 660
90 % 36 68 687
70 % 36 68 734
50 % 36 172 202
40 % 36 172 227
30 % 36 172 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 657
90 % 36 68 684
70 % 36 68 729
50 % 36 68 776
40 % 36 68 810
30 % 36 168 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 460
95 % 36 68 648
90 % 36 68 674
70 % 36 68 716
50 % 36 68 769
40 % 36 173 223
30 % 44 500 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2135
95 % 36 68 646
90 % 36 68 672
70 % 36 68 713
50 % 36 170 204
40 % 36 172 226
30 % 36 172 231
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51719
95 % 36 74 565
90 % 36 74 596
70 % 36 74 629
50 % 36 74 679
40 % 36 179 210
30 % 36 179 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9738
95 % 36 74 569
90 % 36 74 601
70 % 36 74 633
50 % 36 74 681
40 % 36 76 698
30 % 37 78 679
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 412
95 % 36 74 575
90 % 36 74 605
70 % 36 74 635
50 % 36 74 683
40 % 37 179 211
30 % 37 179 223
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2161
95 % 3 21 2792
90 % 36 68 680
70 % 36 68 723
50 % 51 105 316
40 % 58 120 286
30 % 58 122 283
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60656
95 % 1 1 41965
90 % 1 7 9829
70 % 3 27 2100
50 % 36 74 684
40 % 36 79 666
30 % 36 79 673
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 414
95 % 36 74 577
90 % 36 74 607
70 % 36 74 640
50 % 36 74 689
40 % 37 77 691
30 % 37 78 682

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 5DAT 75 O9, o9 60S ribosomal protein L39 4932
74 3I55 29 2 50S ribosomal protein L39e 2238
75 5I4L 75 O9, o9 60S ribosomal protein L39 4932
76 4U51 75 O9, o9 60S ribosomal protein L39 4932
77 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
78 4U53 75 O9, o9 60S ribosomal protein L39 4932
79 1Q86 30 3 50S ribosomal protein L39e 2238
80 4U50 75 O9, o9 60S ribosomal protein L39 4932
81 5LYB 75 O9, o9 60S ribosomal protein L39 4932
82 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
83 3G4S 29 2 50S ribosomal protein L39e 2238
84 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
85 4U56 75 O9, o9 60S ribosomal protein L39 4932
86 2QA4 30 2 50S ribosomal protein L39e 2238
87 5TGA 75 O9, o9 60S ribosomal protein L39 4932
88 1Q7Y 30 3 50S ribosomal protein L39e 2238
89 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
90 4U4O 75 O9, o9 60S ribosomal protein L39 4932
91 5DGV 75 O9, o9 60S ribosomal protein L39 4932
92 5DGE 75 O9, o9 60S ribosomal protein L39 4932
93 4V8P 3 AB, DB, FB, HB RPL39 5911
94 5FCI 75 O9, o9 60S ribosomal protein L39 4932
95 5DC3 75 O9, o9 60S ribosomal protein L39 4932
96 5DGF 75 O9, o9 60S ribosomal protein L39 4932
97 5TGM 75 O9, o9 60S ribosomal protein L39 4932
98 4V7R 60 Be, De 60S ribosomal protein L39 4932
99 5UMD 41 e 60S ribosomal protein L39 5833
100 5MC6 52 AL 60S ribosomal protein L39 4932
101 5H4P 39 l 60S ribosomal protein L39 4932
102 5M1J 59 l5 60S ribosomal protein L39 4932
103 5LZS 37 l Uncharacterized protein 9986
104 5LZT 37 l eL39 9986
105 5LZU 37 l eL39 9986
106 5LZV 37 l eL39 9986
107 5LZW 37 l eL39 9986
108 5LZX 37 l eL39 9986
109 5LZY 37 l eL39 9986
110 5LZZ 37 l eL39 9986
111 5T62 41 y 60S ribosomal protein L39 4932
112 5T6R 40 y 60S ribosomal protein L39 4932
113 5T5H 40 q Ribosomal protein L39 5693
114 5T2A 41 o eL39 5661
115 5T2C 26 f 60S ribosomal protein L39 9606
116 5JUO 43 QA eL39 (yeast L39) 4932
117 5JUP 43 QA eL39 (yeast L39) 4932
118 5JUS 43 QA eL39 (yeast L39) 4932
119 5JUT 43 QA eL39 (yeast L39) 4932
120 5JUU 43 QA eL39 (yeast L39) 4932
121 5JCS 20 l 60S ribosomal protein L39 4932
122 5IT7 40 ll 60S ribosomal protein L39 4932
123 3JCT 38 l 60S ribosomal protein L39 4932
124 3JCS 46 l ribosomal protein L39e 5661
125 5GAK 34 n 60S ribosomal protein L39 4932
126 5FL8 36 l 60S ribosomal protein L39 4932
127 5APN 40 l 60S ribosomal protein L39 4932
128 5APO 40 l 60S ribosomal protein L39 4932
129 3JBN 49 Ae 60S ribosomal protein eL39 5833
130 3JBO 52 Ae 60S ribosomal protein eL39 5833
131 3JBP 49 Ae 60S ribosomal protein eL39 5833
132 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
133 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
134 3JAG 37 l eL39 9986
135 3JAH 37 l eL39 9986
136 3JAI 37 l eL39 9986
137 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
138 5AJ0 40 Al 60S ribosomal protein L39 9606
139 3J92 37 l eL39 9986
140 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
141 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
142 4V3P 59 Lo Ribosomal protein L39 4565
143 3J7O 40 l Ribosomal protein eL39 9823
144 3J7P 41 l Ribosomal protein eL39 9823
145 3J7Q 40 l Ribosomal protein eL39 9823
146 3J7R 40 l Ribosomal protein eL39 9823
147 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
148 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
149 3J79 41 e 60S ribosomal protein eL39 5833
150 3J77 39 89 60S ribosomal protein L39 4932
151 3J78 39 89 60S ribosomal protein L39 4932
152 3J6X 41 79 60S ribosomal protein L39 4932
153 3J6Y 41 79 60S ribosomal protein L39 4932
154 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
155 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
156 4V7F 39 j 60S ribosomal protein L39 4932
157 4V7E 59 Cl 60S ribosomal protein L39E 4565
158 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
159 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
160 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
161 4V6W 73 Cl 60S ribosomal protein L39 7227
162 4V6X 73 Cl 60S ribosomal protein L39 9606
163 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
164 4V6U 36 Bf 50S ribosomal protein L39e 2261
165 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
166 4ADX 3 2 RPL39E 145262
167 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
168 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
169 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
170 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
171 4V7H 21 B1 60S ribosomal protein L39 5541
172 4V5Z 83 B3 60S Ribosomal protein L39e 9612