Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 718
95 % 36 68 509
90 % 36 68 538
70 % 36 68 590
50 % 36 137 223
40 % 36 137 250
30 % 42 407 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52914
95 % 1 1 36980
90 % 1 1 35249
70 % 36 68 582
50 % 36 132 237
40 % 36 132 263
30 % 36 132 278
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 302
95 % 36 74 443
90 % 36 74 466
70 % 36 74 509
50 % 36 74 589
40 % 36 74 633
30 % 41 396 45
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 300
95 % 36 74 440
90 % 36 74 464
70 % 36 74 506
50 % 36 76 565
40 % 36 76 609
30 % 36 78 582
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 347
95 % 36 68 511
90 % 36 68 541
70 % 36 68 593
50 % 36 70 648
40 % 36 70 688
30 % 36 70 690
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1849
95 % 36 68 507
90 % 36 68 536
70 % 36 68 588
50 % 36 68 684
40 % 36 70 685
30 % 36 71 671
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 348
95 % 36 68 512
90 % 36 68 542
70 % 36 68 594
50 % 36 70 649
40 % 36 70 690
30 % 36 71 674
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 357
95 % 36 68 505
90 % 36 68 534
70 % 36 68 586
50 % 36 68 681
40 % 36 68 714
30 % 36 136 267
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 448
90 % 36 74 471
70 % 36 74 517
50 % 36 76 569
40 % 36 78 585
30 % 41 342 53
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 305
95 % 36 74 446
90 % 36 74 469
70 % 36 74 514
50 % 36 141 219
40 % 36 141 248
30 % 36 141 260
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 332
95 % 34 70 487
90 % 34 70 514
70 % 34 70 563
50 % 34 70 651
40 % 34 70 691
30 % 34 70 691
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 449
90 % 36 74 472
70 % 36 74 518
50 % 36 74 596
40 % 36 74 640
30 % 36 74 637
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 345
95 % 36 68 506
90 % 36 68 535
70 % 36 68 587
50 % 36 68 682
40 % 36 70 684
30 % 36 71 670
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 514
90 % 36 68 544
70 % 36 68 596
50 % 36 68 688
40 % 36 68 718
30 % 36 68 719
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56014
95 % 3 5 12417
90 % 3 5 12182
70 % 3 5 11486
50 % 3 5 10299
40 % 3 5 9392
30 % 3 5 8193
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61910
95 % 1 1 42993
90 % 1 1 40997
70 % 3 21 2500
50 % 7 30 1688
40 % 7 90 384
30 % 26 113 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 516
90 % 36 68 546
70 % 36 68 598
50 % 36 69 670
40 % 36 69 705
30 % 36 69 706
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63238
95 % 36 68 517
90 % 36 68 547
70 % 36 68 599
50 % 36 134 231
40 % 36 134 258
30 % 36 134 274
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 349
95 % 36 68 513
90 % 36 68 543
70 % 36 68 595
50 % 36 68 687
40 % 36 68 717
30 % 36 132 281
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 344
95 % 36 68 504
90 % 36 68 533
70 % 36 68 585
50 % 36 68 680
40 % 36 136 253
30 % 42 402 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1826
95 % 36 68 501
90 % 36 68 530
70 % 36 68 581
50 % 36 132 236
40 % 36 134 256
30 % 36 134 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46752
95 % 36 74 432
90 % 36 74 457
70 % 36 74 502
50 % 36 74 580
40 % 36 141 244
30 % 36 141 257
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8658
95 % 36 74 436
90 % 36 74 461
70 % 36 74 505
50 % 36 74 583
40 % 36 76 607
30 % 36 77 593
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 301
95 % 36 74 442
90 % 36 74 465
70 % 36 74 507
50 % 36 74 587
40 % 37 141 247
30 % 37 141 259
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1862
95 % 3 21 2441
90 % 36 68 540
70 % 36 68 592
50 % 51 95 340
40 % 58 107 308
30 % 58 109 317
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55005
95 % 1 1 38142
90 % 1 7 8820
70 % 3 27 1836
50 % 36 74 588
40 % 36 79 571
30 % 36 79 574
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 303
95 % 36 74 444
90 % 36 74 467
70 % 36 74 512
50 % 36 74 592
40 % 37 77 597
30 % 37 78 586

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 3I55 29 2 50S ribosomal protein L39e 2238
74 4U51 75 O9, o9 60S ribosomal protein L39 4932
75 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
76 4U53 75 O9, o9 60S ribosomal protein L39 4932
77 1Q86 30 3 50S ribosomal protein L39e 2238
78 4U50 75 O9, o9 60S ribosomal protein L39 4932
79 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
80 3G4S 29 2 50S ribosomal protein L39e 2238
81 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
82 4U56 75 O9, o9 60S ribosomal protein L39 4932
83 2QA4 30 2 50S ribosomal protein L39e 2238
84 1Q7Y 30 3 50S ribosomal protein L39e 2238
85 4U4O 75 O9, o9 60S ribosomal protein L39 4932
86 4V8P 3 AB, DB, FB, HB RPL39 5911
87 4V7R 60 Be, De 60S ribosomal protein L39 4932
88 5FL8 36 l 60S ribosomal protein L39 4932
89 5APN 40 l 60S ribosomal protein L39 4932
90 5APO 40 l 60S ribosomal protein L39 4932
91 3JBN 49 Ae 60S ribosomal protein eL39 5833
92 3JBO 52 Ae 60S ribosomal protein eL39 5833
93 3JBP 49 Ae 60S ribosomal protein eL39 5833
94 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
95 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
96 3JAG 37 l eL39 9986
97 3JAH 37 l eL39 9986
98 3JAI 37 l eL39 9986
99 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
100 5AJ0 40 Al 60S ribosomal protein L39 9606
101 3J92 37 l eL39 9986
102 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
103 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
104 4V3P 59 Lo Ribosomal protein L39 4565
105 3J7O 40 l Ribosomal protein eL39 9823
106 3J7P 41 l Ribosomal protein eL39 9823
107 3J7Q 40 l Ribosomal protein eL39 9823
108 3J7R 40 l Ribosomal protein eL39 9823
109 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
110 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
111 3J79 41 e 60S ribosomal protein eL39 5833
112 3J77 39 89 60S ribosomal protein L39 4932
113 3J78 39 89 60S ribosomal protein L39 4932
114 3J6X 41 79 60S ribosomal protein L39 4932
115 3J6Y 41 79 60S ribosomal protein L39 4932
116 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
117 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
118 4V7F 39 j 60S ribosomal protein L39 4932
119 4V7E 59 Cl 60S ribosomal protein L39E 4565
120 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
121 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
122 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
123 4V6W 73 Cl 60S ribosomal protein L39 7227
124 4V6X 73 Cl 60S ribosomal protein L39 9606
125 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
126 4V6U 36 Bf 50S ribosomal protein L39e 2261
127 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
128 4ADX 3 2 RPL39E 145262
129 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
130 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
131 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
132 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
133 4V7H 21 B1 60S ribosomal protein L39 5541
134 4V5Z 83 B3 60S Ribosomal protein L39e 9612