Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 788
95 % 36 68 607
90 % 36 68 641
70 % 36 68 682
50 % 36 163 208
40 % 36 163 229
30 % 44 479 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56994
95 % 1 1 39717
90 % 1 1 37825
70 % 36 68 675
50 % 36 159 215
40 % 36 159 237
30 % 36 159 249
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 344
95 % 36 74 508
90 % 36 74 542
70 % 36 74 580
50 % 36 74 654
40 % 36 74 700
30 % 43 468 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 342
95 % 36 74 506
90 % 36 74 538
70 % 36 74 576
50 % 36 76 634
40 % 36 76 678
30 % 36 79 658
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 418
95 % 36 68 609
90 % 36 68 643
70 % 36 68 684
50 % 36 70 707
40 % 36 70 746
30 % 36 70 751
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2086
95 % 36 68 605
90 % 36 68 640
70 % 36 68 681
50 % 36 68 735
40 % 36 72 717
30 % 36 72 721
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 420
95 % 36 68 612
90 % 36 68 645
70 % 36 68 687
50 % 36 70 709
40 % 36 70 748
30 % 36 71 736
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 431
95 % 36 68 603
90 % 36 68 638
70 % 36 68 678
50 % 36 68 732
40 % 36 68 766
30 % 36 162 242
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 351
95 % 36 74 514
90 % 36 74 551
70 % 36 74 589
50 % 36 76 636
40 % 36 78 657
30 % 43 388 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 349
95 % 36 74 512
90 % 36 74 548
70 % 36 74 588
50 % 36 167 203
40 % 36 167 224
30 % 36 167 232
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 397
95 % 34 70 579
90 % 34 70 618
70 % 34 70 655
50 % 34 70 710
40 % 34 70 750
30 % 34 70 754
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 352
95 % 36 74 515
90 % 36 74 552
70 % 36 74 590
50 % 36 74 659
40 % 36 74 703
30 % 36 74 704
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 412
95 % 36 68 604
90 % 36 68 639
70 % 36 68 679
50 % 36 68 733
40 % 36 70 742
30 % 36 71 734
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 422
95 % 36 68 614
90 % 36 68 647
70 % 36 68 689
50 % 36 68 739
40 % 36 68 770
30 % 36 68 774
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60269
95 % 3 5 13470
90 % 3 5 13223
70 % 3 5 12428
50 % 3 5 11108
40 % 3 5 10092
30 % 3 5 8767
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66468
95 % 1 1 46065
90 % 1 1 43839
70 % 3 21 2742
50 % 7 30 1833
40 % 7 116 324
30 % 26 139 282
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 423
95 % 36 68 615
90 % 36 68 648
70 % 36 68 692
50 % 36 69 720
40 % 36 69 759
30 % 36 69 765
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67845
95 % 36 68 616
90 % 36 68 649
70 % 36 68 693
50 % 36 160 213
40 % 36 160 235
30 % 36 160 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 421
95 % 36 68 613
90 % 36 68 646
70 % 36 68 688
50 % 36 68 738
40 % 36 68 769
30 % 36 156 253
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 411
95 % 36 68 602
90 % 36 68 637
70 % 36 68 677
50 % 36 68 731
40 % 36 161 230
30 % 44 473 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2066
95 % 36 68 598
90 % 36 68 635
70 % 36 68 674
50 % 36 158 214
40 % 36 160 233
30 % 36 160 245
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50390
95 % 36 74 502
90 % 36 74 533
70 % 36 74 569
50 % 36 74 647
40 % 36 167 222
30 % 36 167 230
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9502
95 % 36 74 504
90 % 36 74 535
70 % 36 74 575
50 % 36 74 650
40 % 36 76 677
30 % 36 77 676
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 343
95 % 36 74 507
90 % 36 74 540
70 % 36 74 578
50 % 36 74 652
40 % 37 167 223
30 % 37 167 231
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2094
95 % 3 21 2716
90 % 36 68 642
70 % 36 68 683
50 % 51 105 303
40 % 58 119 275
30 % 58 121 281
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59204
95 % 1 1 40953
90 % 1 7 9609
70 % 3 27 2027
50 % 36 74 653
40 % 36 79 645
30 % 36 79 661
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 345
95 % 36 74 509
90 % 36 74 545
70 % 36 74 584
50 % 36 74 657
40 % 37 77 667
30 % 37 78 668

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 5DAT 75 O9, o9 60S ribosomal protein L39 4932
74 3I55 29 2 50S ribosomal protein L39e 2238
75 5I4L 75 O9, o9 60S ribosomal protein L39 4932
76 4U51 75 O9, o9 60S ribosomal protein L39 4932
77 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
78 4U53 75 O9, o9 60S ribosomal protein L39 4932
79 1Q86 30 3 50S ribosomal protein L39e 2238
80 4U50 75 O9, o9 60S ribosomal protein L39 4932
81 5LYB 75 O9, o9 60S ribosomal protein L39 4932
82 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
83 3G4S 29 2 50S ribosomal protein L39e 2238
84 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
85 4U56 75 O9, o9 60S ribosomal protein L39 4932
86 2QA4 30 2 50S ribosomal protein L39e 2238
87 5TGA 75 O9, o9 60S ribosomal protein L39 4932
88 1Q7Y 30 3 50S ribosomal protein L39e 2238
89 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
90 4U4O 75 O9, o9 60S ribosomal protein L39 4932
91 4V8P 3 AB, DB, FB, HB RPL39 5911
92 5FCI 75 O9, o9 60S ribosomal protein L39 4932
93 5DC3 75 O9, o9 60S ribosomal protein L39 4932
94 4V7R 60 Be, De 60S ribosomal protein L39 4932
95 5LZS 37 l Uncharacterized protein 9986
96 5LZT 37 l eL39 9986
97 5LZU 37 l eL39 9986
98 5LZV 37 l eL39 9986
99 5LZW 37 l eL39 9986
100 5LZX 37 l eL39 9986
101 5LZY 37 l eL39 9986
102 5LZZ 37 l eL39 9986
103 5T5H 40 q Ribosomal protein L39 5693
104 5JUO 43 QA eL39 (yeast L39) 4932
105 5JUP 43 QA eL39 (yeast L39) 4932
106 5JUS 43 QA eL39 (yeast L39) 4932
107 5JUT 43 QA eL39 (yeast L39) 4932
108 5JUU 43 QA eL39 (yeast L39) 4932
109 5JCS 20 l 60S ribosomal protein L39 4932
110 5IT7 40 ll 60S ribosomal protein L39 4932
111 3JCT 38 l 60S ribosomal protein L39 4932
112 3JCS 46 l ribosomal protein L39e 5661
113 5GAK 34 n 60S ribosomal protein L39 4932
114 5FL8 36 l 60S ribosomal protein L39 4932
115 5APN 40 l 60S ribosomal protein L39 4932
116 5APO 40 l 60S ribosomal protein L39 4932
117 3JBN 49 Ae 60S ribosomal protein eL39 5833
118 3JBO 52 Ae 60S ribosomal protein eL39 5833
119 3JBP 49 Ae 60S ribosomal protein eL39 5833
120 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
121 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
122 3JAG 37 l eL39 9986
123 3JAH 37 l eL39 9986
124 3JAI 37 l eL39 9986
125 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
126 5AJ0 40 Al 60S ribosomal protein L39 9606
127 3J92 37 l eL39 9986
128 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
129 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
130 4V3P 59 Lo Ribosomal protein L39 4565
131 3J7O 40 l Ribosomal protein eL39 9823
132 3J7P 41 l Ribosomal protein eL39 9823
133 3J7Q 40 l Ribosomal protein eL39 9823
134 3J7R 40 l Ribosomal protein eL39 9823
135 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
136 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
137 3J79 41 e 60S ribosomal protein eL39 5833
138 3J77 39 89 60S ribosomal protein L39 4932
139 3J78 39 89 60S ribosomal protein L39 4932
140 3J6X 41 79 60S ribosomal protein L39 4932
141 3J6Y 41 79 60S ribosomal protein L39 4932
142 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
143 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
144 4V7F 39 j 60S ribosomal protein L39 4932
145 4V7E 59 Cl 60S ribosomal protein L39E 4565
146 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
147 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
148 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
149 4V6W 73 Cl 60S ribosomal protein L39 7227
150 4V6X 73 Cl 60S ribosomal protein L39 9606
151 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
152 4V6U 36 Bf 50S ribosomal protein L39e 2261
153 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
154 4ADX 3 2 RPL39E 145262
155 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
156 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
157 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
158 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
159 4V7H 21 B1 60S ribosomal protein L39 5541
160 4V5Z 83 B3 60S Ribosomal protein L39e 9612