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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 271 Members. Sequence cutoff: 30% Cluster size: 128 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 30 2 50S ribosomal protein L39e 272569  
2 1VQO 30 2 50S ribosomal protein L39e 2238  
3 1VQ8 30 2 50S ribosomal protein L39e 2238  
4 1S72 30 2 50S ribosomal protein L39e 2238  
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238  
6 1YHQ 30 2 50S ribosomal protein L39e 2238  
7 1VQP 30 2 50S ribosomal protein L39e 2238  
8 1VQM 30 2 50S ribosomal protein L39e 2238  
9 3CC2 28 2 50S ribosomal protein L39e 2238  
10 1VQL 30 2 50S ribosomal protein L39e 2238  
11 1VQK 30 2 50S ribosomal protein L39e 2238  
12 1VQN 31 2 50S ribosomal protein L39e 2238  
13 1YIJ 30 2 50S ribosomal protein L39e 2238  
14 1YI2 30 2 50S ribosomal protein L39e 2238  
15 1VQ9 30 2 50S ribosomal protein L39e 2238  
16 1VQ7 30 2 50S ribosomal protein L39e 2238  
17 3CCM 28 2 50S ribosomal protein L39e 2238  
18 1VQ5 30 2 50S ribosomal protein L39e 2238  
19 3CCJ 28 2 50S ribosomal protein L39e 2238  
20 3CC7 28 2 50S ribosomal protein L39e 2238  
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
22 3CCE 28 2 50S ribosomal protein L39e 2238  
23 3G6E 29 2 50S ribosomal protein L39e 2238  
24 3CPW 29 1 50S ribosomal protein L39e 2238  
25 3CCU 28 2 50S ribosomal protein L39e 2238  
26 1VQ6 31 2 50S ribosomal protein L39e 2238  
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238  
28 3CCL 28 2 50S ribosomal protein L39e 2238  
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238  
30 1YJ9 30 2 50S ribosomal protein L39e 2238  
31 3CD6 28 2 50S ribosomal protein L39e 2238  
32 3CCV 28 2 50S ribosomal protein L39e 2238  
33 3CC4 28 2 50S ribosomal protein L39e 2238  
34 2OTL 29 2 50S ribosomal protein L39e 2238  
35 3G71 29 2 50S ribosomal protein L39e 2238  
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238  
37 1VQ4 30 2 50S ribosomal protein L39e 2238  
38 1YJN 30 2 50S ribosomal protein L39e 2238  
39 3CMA 28 2 50S ribosomal protein L39e 2238  
40 3CCS 28 2 50S ribosomal protein L39e 2238  
41 3CCQ 28 2 50S ribosomal protein L39e 2238  
42 3I56 28 2 50S ribosomal protein L39e 2238  
43 3CCR 28 2 50S ribosomal protein L39e 2238  
44 2OTJ 29 2 50S ribosomal protein L39e 2238  
45 4V88 75 Bl, Dl 60S ribosomal protein L39 559292  
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238  
47 3OW2 29 1 50S ribosomal protein L39e 2238  
48 4U4R 75 O9, o9 60S ribosomal protein L39 559292  
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238  
50 1QVG 30 1 50S ribosomal protein L39e 2238  
51 3CME 28 2 50S ribosomal protein L39e 2238  
52 2QEX 29 2 50S ribosomal protein L39e 2238  
53 4U3U 75 O9, o9 60S ribosomal protein L39 559292  
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238  
55 4U3M 75 O9, o9 60S ribosomal protein L39 559292  
56 1N8R 29 3 50S ribosomal protein L39e 2238  
57 4U3N 75 O9, o9 60S ribosomal protein L39 559292  
58 1Q81 30 3 50S ribosomal protein L39e 2238  
59 1Q82 30 3 50S ribosomal protein L39e 2238  
60 1QVF 30 1 50S ribosomal protein L39e 2238  
61 4U52 75 O9, o9 60S ribosomal protein L39 559292  
62 4U4Q 75 O9, o9 60S ribosomal protein L39 559292  
63 1NJI 29 3 50S ribosomal protein L39e 2238  
64 4U6F 75 O9, o9 60S ribosomal protein L39 559292  
65 4U4U 75 O9, o9 60S ribosomal protein L39 559292  
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238  
67 4U4Z 75 O9, o9 60S ribosomal protein L39 559292  
68 4U4Y 75 O9, o9 60S ribosomal protein L39 559292  
69 4U4N 75 O9, o9 60S ribosomal protein L39 559292  
70 4U55 75 O9, o9 60S ribosomal protein L39 559292  
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238  
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238  
73 3I55 29 2 50S ribosomal protein L39e 2238  
74 4U51 75 O9, o9 60S ribosomal protein L39 559292  
75 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238  
76 4U53 75 O9, o9 60S ribosomal protein L39 559292  
77 1Q86 30 3 50S ribosomal protein L39e 2238  
78 4U50 75 O9, o9 60S ribosomal protein L39 559292  
79 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238  
80 3G4S 29 2 50S ribosomal protein L39e 2238  
81 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238  
82 4U56 75 O9, o9 60S ribosomal protein L39 559292  
83 2QA4 30 2 50S ribosomal protein L39e 2238  
84 1Q7Y 30 3 50S ribosomal protein L39e 2238  
85 4U4O 75 O9, o9 60S ribosomal protein L39 559292  
86 4V8P 3 AB, DB, FB, HB RPL39 5911  
87 4V7R 60 Be, De 60S ribosomal protein L39 4932  
88 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986  
89 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986  
90 3JAG 37 l eL39 9986  
91 3JAH 37 l eL39 9986  
92 3JAI 37 l eL39 9986  
93 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606  
94 5AJ0 40 Al 60S ribosomal protein L39 9606  
95 3J92 37 l eL39 9986  
96 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986  
97 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986  
98 4V3P 59 Lo Ribosomal protein L39 4565  
99 3J7O 40 l Ribosomal protein eL39 9823  
100 3J7P 41 l Ribosomal protein eL39 9823  
101 3J7Q 40 l Ribosomal protein eL39 9823  
102 3J7R 40 l Ribosomal protein eL39 9823  
103 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986  
104 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986  
105 3J79 41 e 60S ribosomal protein eL39 36329  
106 3J77 39 89 60S ribosomal protein L39 4932  
107 3J78 39 89 60S ribosomal protein L39 4932  
108 3J6X 41 79 60S ribosomal protein L39 580240  
109 3J6Y 41 79 60S ribosomal protein L39 580240  
110 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986  
111 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985  
112 4V7F 39 j 60S ribosomal protein L39 4932  
113 4V7E 59 Cl 60S ribosomal protein L39E 4565  
114 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932  
115 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932  
116 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190  
117 4V6W 73 Cl 60S ribosomal protein L39 7227  
118 4V6X 73 Cl 60S ribosomal protein L39 9606  
119 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431  
120 4V6U 36 Bf 50S ribosomal protein L39e 186497  
121 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 559292  
122 4ADX 3 2 RPL39E 187420  
123 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932  
124 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932  
125 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932  
126 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565  
127 4V7H 21 B1 60S ribosomal protein L39 5541  
128 4V5Z 83 B3 60S Ribosomal protein L39e 9615  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 686
95% 36 68 489
90% 36 68 512
70% 36 68 562
50% 36 128 228
40% 36 128 257
30% 41 366 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50864
95% 1 1 35618
90% 1 1 34004
70% 36 68 555
50% 36 126 236
40% 36 126 264
30% 36 126 279
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 426
90% 36 74 452
70% 36 74 488
50% 36 74 557
40% 36 74 598
30% 40 358 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 423
90% 36 74 450
70% 36 74 485
50% 36 76 534
40% 36 76 576
30% 36 78 553
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 491
90% 36 68 515
70% 36 68 565
50% 36 70 613
40% 36 70 650
30% 36 70 646
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1777
95% 36 68 487
90% 36 68 510
70% 36 68 560
50% 36 68 644
40% 36 70 647
30% 36 71 628
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 492
90% 36 68 516
70% 36 68 566
50% 36 70 615
40% 36 70 652
30% 36 71 630
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 343
95% 36 68 485
90% 36 68 508
70% 36 68 558
50% 36 68 641
40% 36 68 674
30% 36 129 268
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 431
90% 36 74 457
70% 36 74 494
50% 36 76 538
40% 36 78 551
30% 40 310 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 429
90% 36 74 455
70% 36 74 492
50% 36 135 218
40% 36 135 242
30% 36 135 257
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 320
95% 34 70 467
90% 34 70 490
70% 34 70 539
50% 34 70 616
40% 34 70 653
30% 34 70 648
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 301
95% 36 74 432
90% 36 74 458
70% 36 74 495
50% 36 74 564
40% 36 74 603
30% 36 74 598
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 486
90% 36 68 509
70% 36 68 559
50% 36 68 642
40% 36 70 646
30% 36 71 627
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 494
90% 36 68 518
70% 36 68 568
50% 36 68 648
40% 36 68 678
30% 36 68 677
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53905
95% 3 5 11947
90% 3 5 11733
70% 3 5 11070
50% 3 5 9935
40% 3 5 9080
30% 3 5 7930
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59685
95% 1 1 41537
90% 1 1 39665
70% 3 21 2390
50% 7 30 1617
40% 7 84 400
30% 26 107 328
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 336
95% 36 68 496
90% 36 68 520
70% 36 68 570
50% 36 69 633
40% 36 69 669
30% 36 69 666
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60994
95% 36 68 497
90% 36 68 521
70% 36 68 571
50% 36 128 229
40% 36 128 258
30% 36 128 271
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 493
90% 36 68 517
70% 36 68 567
50% 36 68 647
40% 36 68 677
30% 36 127 275
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 484
90% 36 68 507
70% 36 68 557
50% 36 68 640
40% 36 127 261
30% 41 361 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1756
95% 36 68 481
90% 36 68 504
70% 36 68 554
50% 36 126 235
40% 36 128 255
30% 36 128 270
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44924
95% 36 74 416
90% 36 74 443
70% 36 74 481
50% 36 74 550
40% 36 132 248
30% 36 132 262
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8295
95% 36 74 420
90% 36 74 447
70% 36 74 484
50% 36 74 552
40% 36 76 572
30% 36 77 561
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 425
90% 36 74 451
70% 36 74 486
50% 36 74 555
40% 37 134 244
30% 37 134 259
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1788
95% 3 21 2334
90% 36 68 514
70% 36 68 564
50% 51 95 328
40% 58 105 302
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52908
95% 1 1 36757
90% 1 7 8478
70% 3 27 1758
50% 36 74 556
40% 36 79 538
30% 36 79 544
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 427
90% 36 74 453
70% 36 74 491
50% 36 74 560
40% 37 77 562
30% 37 78 556
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.