Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 742
95 % 36 68 527
90 % 36 68 555
70 % 36 68 609
50 % 36 141 223
40 % 36 141 254
30 % 44 428 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54386
95 % 1 1 37981
90 % 1 1 36183
70 % 36 68 603
50 % 36 136 236
40 % 36 136 263
30 % 36 136 275
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 462
90 % 36 74 489
70 % 36 74 534
50 % 36 74 621
40 % 36 74 664
30 % 43 417 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 76 590
40 % 36 76 640
30 % 36 78 615
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 673
40 % 36 70 715
30 % 36 70 717
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1928
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 68 702
40 % 36 70 712
30 % 36 71 699
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 675
40 % 36 70 717
30 % 36 71 702
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 699
40 % 36 68 733
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 76 592
40 % 36 78 613
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 507
90 % 34 70 532
70 % 34 70 583
50 % 34 70 676
40 % 34 70 718
30 % 34 70 719
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 74 627
40 % 36 74 670
30 % 36 74 664
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 711
30 % 36 71 698
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 704
40 % 36 68 736
30 % 36 68 736
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57530
95 % 3 5 12801
90 % 3 5 12559
70 % 3 5 11819
50 % 3 5 10592
40 % 3 5 9666
30 % 3 5 8412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63523
95 % 1 1 44095
90 % 1 1 42013
70 % 3 21 2574
50 % 7 30 1732
40 % 7 94 377
30 % 26 117 327
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 690
40 % 36 69 728
30 % 36 69 731
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64867
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 703
40 % 36 68 735
30 % 36 136 276
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 698
40 % 36 140 256
30 % 44 423 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1904
95 % 36 68 521
90 % 36 68 549
70 % 36 68 602
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48090
95 % 36 74 452
90 % 36 74 480
70 % 36 74 526
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8939
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 616
40 % 36 76 639
30 % 36 77 624
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 461
90 % 36 74 488
70 % 36 74 532
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1939
95 % 3 21 2519
90 % 36 68 557
70 % 36 68 610
50 % 51 96 345
40 % 58 110 307
30 % 58 112 322
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56508
95 % 1 1 39163
90 % 1 7 9098
70 % 3 27 1891
50 % 36 74 620
40 % 36 79 601
30 % 36 79 605
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 463
90 % 36 74 491
70 % 36 74 536
50 % 36 74 624
40 % 37 77 624
30 % 37 78 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 30 2 50S ribosomal protein L39e 2238
2 1VQO 30 2 50S ribosomal protein L39e 2238
3 1VQ8 30 2 50S ribosomal protein L39e 2238
4 1S72 30 2 50S ribosomal protein L39e 2238
5 1JJ2 29 1 RIBOSOMAL PROTEIN L39E 2238
6 1YHQ 30 2 50S ribosomal protein L39e 2238
7 1VQP 30 2 50S ribosomal protein L39e 2238
8 1VQM 30 2 50S ribosomal protein L39e 2238
9 3CC2 28 2 50S ribosomal protein L39e 2238
10 1VQL 30 2 50S ribosomal protein L39e 2238
11 1VQK 30 2 50S ribosomal protein L39e 2238
12 1VQN 31 2 50S ribosomal protein L39e 2238
13 1YIJ 30 2 50S ribosomal protein L39e 2238
14 1YI2 30 2 50S ribosomal protein L39e 2238
15 1VQ9 30 2 50S ribosomal protein L39e 2238
16 1VQ7 30 2 50S ribosomal protein L39e 2238
17 3CCM 28 2 50S ribosomal protein L39e 2238
18 1VQ5 30 2 50S ribosomal protein L39e 2238
19 3CCJ 28 2 50S ribosomal protein L39e 2238
20 3CC7 28 2 50S ribosomal protein L39e 2238
21 1YIT 3 2 50S RIBOSOMAL PROTEIN L39E 2238
22 3CCE 28 2 50S ribosomal protein L39e 2238
23 3G6E 29 2 50S ribosomal protein L39e 2238
24 3CPW 29 1 50S ribosomal protein L39e 2238
25 3CCU 28 2 50S ribosomal protein L39e 2238
26 1VQ6 31 2 50S ribosomal protein L39e 2238
27 1M90 30 3 RIBOSOMAL PROTEIN L39E 2238
28 3CCL 28 2 50S ribosomal protein L39e 2238
29 1YJW 3 2 50S RIBOSOMAL PROTEIN L39E 2238
30 1YJ9 30 2 50S ribosomal protein L39e 2238
31 3CD6 28 2 50S ribosomal protein L39e 2238
32 3CCV 28 2 50S ribosomal protein L39e 2238
33 3CC4 28 2 50S ribosomal protein L39e 2238
34 2OTL 29 2 50S ribosomal protein L39e 2238
35 3G71 29 2 50S ribosomal protein L39e 2238
36 1FFK 27 Y RIBOSOMAL PROTEIN L39E 2238
37 1VQ4 30 2 50S ribosomal protein L39e 2238
38 1YJN 30 2 50S ribosomal protein L39e 2238
39 3CMA 28 2 50S ribosomal protein L39e 2238
40 3CCS 28 2 50S ribosomal protein L39e 2238
41 3CCQ 28 2 50S ribosomal protein L39e 2238
42 3I56 28 2 50S ribosomal protein L39e 2238
43 3CCR 28 2 50S ribosomal protein L39e 2238
44 2OTJ 29 2 50S ribosomal protein L39e 2238
45 4V88 75 Bl, Dl 60S ribosomal protein L39 4932
46 1KQS 31 1 RIBOSOMAL PROTEIN L39E 2238
47 3OW2 29 1 50S ribosomal protein L39e 2238
48 4U4R 75 O9, o9 60S ribosomal protein L39 4932
49 3CXC 30 1 RIBOSOMAL PROTEIN L39E 2238
50 1QVG 30 1 50S ribosomal protein L39e 2238
51 3CME 28 2 50S ribosomal protein L39e 2238
52 2QEX 29 2 50S ribosomal protein L39e 2238
53 4U3U 75 O9, o9 60S ribosomal protein L39 4932
54 1KC8 29 3 RIBOSOMAL PROTEIN L39E 2238
55 4U3M 75 O9, o9 60S ribosomal protein L39 4932
56 1N8R 29 3 50S ribosomal protein L39e 2238
57 4U3N 75 O9, o9 60S ribosomal protein L39 4932
58 1Q81 30 3 50S ribosomal protein L39e 2238
59 1Q82 30 3 50S ribosomal protein L39e 2238
60 1QVF 30 1 50S ribosomal protein L39e 2238
61 4U52 75 O9, o9 60S ribosomal protein L39 4932
62 4U4Q 75 O9, o9 60S ribosomal protein L39 4932
63 1NJI 29 3 50S ribosomal protein L39e 2238
64 4U6F 75 O9, o9 60S ribosomal protein L39 4932
65 4U4U 75 O9, o9 60S ribosomal protein L39 4932
66 1K73 29 3 RIBOSOMAL PROTEIN L39E 2238
67 4U4Z 75 O9, o9 60S ribosomal protein L39 4932
68 4U4Y 75 O9, o9 60S ribosomal protein L39 4932
69 4U4N 75 O9, o9 60S ribosomal protein L39 4932
70 4U55 75 O9, o9 60S ribosomal protein L39 4932
71 1K9M 29 3 RIBOSOMAL PROTEIN L39E 2238
72 1KD1 29 3 RIBOSOMAL PROTEIN L39E 2238
73 3I55 29 2 50S ribosomal protein L39e 2238
74 4U51 75 O9, o9 60S ribosomal protein L39 4932
75 1K8A 29 3 RIBOSOMAL PROTEIN L39E 2238
76 4U53 75 O9, o9 60S ribosomal protein L39 4932
77 1Q86 30 3 50S ribosomal protein L39e 2238
78 4U50 75 O9, o9 60S ribosomal protein L39 4932
79 1M1K 29 3 RIBOSOMAL PROTEIN L39E 2238
80 3G4S 29 2 50S ribosomal protein L39e 2238
81 1W2B 2 1 50S RIBOSOMAL PROTEIN L39E 2238
82 4U56 75 O9, o9 60S ribosomal protein L39 4932
83 2QA4 30 2 50S ribosomal protein L39e 2238
84 1Q7Y 30 3 50S ribosomal protein L39e 2238
85 5FCJ 75 O9, o9 60S ribosomal protein L39 4932
86 4U4O 75 O9, o9 60S ribosomal protein L39 4932
87 4V8P 3 AB, DB, FB, HB RPL39 5911
88 5FCI 75 O9, o9 60S ribosomal protein L39 4932
89 4V7R 60 Be, De 60S ribosomal protein L39 4932
90 5IT7 40 ll 60S ribosomal protein L39 4932
91 5GAK 34 n 60S ribosomal protein L39 4932
92 5FL8 36 l 60S ribosomal protein L39 4932
93 5APN 40 l 60S ribosomal protein L39 4932
94 5APO 40 l 60S ribosomal protein L39 4932
95 3JBN 49 Ae 60S ribosomal protein eL39 5833
96 3JBO 52 Ae 60S ribosomal protein eL39 5833
97 3JBP 49 Ae 60S ribosomal protein eL39 5833
98 3JAN 29 l Ribosomal protein eL39 SEE REMARK 999 9986
99 3JAJ 29 l Ribosomal protein eL39 SEE REMARK 999 9986
100 3JAG 37 l eL39 9986
101 3JAH 37 l eL39 9986
102 3JAI 37 l eL39 9986
103 4UG0 40 Ll 60S RIBOSOMAL PROTEIN L39 9606
104 5AJ0 40 Al 60S ribosomal protein L39 9606
105 3J92 37 l eL39 9986
106 4D67 37 l 60S RIBOSOMAL PROTEIN L39 9986
107 4D5Y 37 l 60S RIBOSOMAL PROTEIN EL39 9986
108 4V3P 59 Lo Ribosomal protein L39 4565
109 3J7O 40 l Ribosomal protein eL39 9823
110 3J7P 41 l Ribosomal protein eL39 9823
111 3J7Q 40 l Ribosomal protein eL39 9823
112 3J7R 40 l Ribosomal protein eL39 9823
113 4UJC 43 Bl 60S RIBOSOMAL PROTEIN L39 9986
114 4UJD 40 Al 60S RIBOSOMAL PROTEIN L39 9986
115 3J79 41 e 60S ribosomal protein eL39 5833
116 3J77 39 89 60S ribosomal protein L39 4932
117 3J78 39 89 60S ribosomal protein L39 4932
118 3J6X 41 79 60S ribosomal protein L39 4932
119 3J6Y 41 79 60S ribosomal protein L39 4932
120 4UJE 74 Cl 60S RIBOSOMAL PROTEIN L39 9986
121 4V91 40 l EL39 RIBOSOMAL PROTEIN EL39 28985
122 4V7F 39 j 60S ribosomal protein L39 4932
123 4V7E 59 Cl 60S ribosomal protein L39E 4565
124 4V8Y 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
125 4V8Z 72 Bl 60S RIBOSOMAL PROTEIN L39 4932
126 4V4N 3 Af 50S ribosomal protein L39E SEE REMARK 999 2190
127 4V6W 73 Cl 60S ribosomal protein L39 7227
128 4V6X 73 Cl 60S ribosomal protein L39 9606
129 4V8M 76 Bq 60S RIBOSOMAL PROTEIN L39, PUTATIVE 185431
130 4V6U 36 Bf 50S ribosomal protein L39e 2261
131 4V8T 38 l 60S RIBOSOMAL PROTEIN L39 4932
132 4ADX 3 2 RPL39E 145262
133 4V6I 66 Bo 60S ribosomal protein rpL39 (L39e) 4932
134 2WW9 15 O 60S RIBOSOMAL PROTEIN L39 4932
135 2WWA 15 O 60S RIBOSOMAL PROTEIN L39 4932
136 2WWB 15 O 60S RIBOSOMAL PROTEIN L39 4565
137 4V7H 21 B1 60S ribosomal protein L39 5541
138 4V5Z 83 B3 60S Ribosomal protein L39e 9612