POP-OUT | CLOSE

An Information Portal to 106082 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 471 Members. Sequence cutoff: 95% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
Select for download / view details OR: Select two chains for comparison
  Download      Details  
1 4V9F 29 1 50S ribosomal protein L37e 272569  
2 1VQO 29 1 50S ribosomal protein L37e 2238  
3 1VQ8 29 1 50S ribosomal protein L37e 2238  
4 1S72 29 1 50S ribosomal protein L37e 2238  
5 1JJ2 28 Z RIBOSOMAL PROTEIN L37E 2238  
6 1YHQ 29 1 50S ribosomal protein L37e 2238  
7 1VQP 29 1 50S ribosomal protein L37e 2238  
8 1VQM 29 1 50S ribosomal protein L37e 2238  
9 3CC2 27 1 50S ribosomal protein L37e 2238  
10 1VQL 29 1 50S ribosomal protein L37e 2238  
11 1VQK 29 1 50S ribosomal protein L37e 2238  
12 1VQN 30 1 50S ribosomal protein L37e 2238  
13 1YIJ 29 1 50S ribosomal protein L37e 2238  
14 1YI2 29 1 50S ribosomal protein L37e 2238  
15 1VQ9 29 1 50S ribosomal protein L37e 2238  
16 1VQ7 29 1 50S ribosomal protein L37e 2238  
17 3CCM 27 1 50S ribosomal protein L37e 272569  
18 1VQ5 29 1 50S ribosomal protein L37e 2238  
19 3CCJ 27 1 50S ribosomal protein L37e 272569  
20 3CC7 27 1 50S ribosomal protein L37e 2238  
21 1YIT 2 1 50S RIBOSOMAL PROTEIN L37E 2238  
22 3CCE 27 1 50S ribosomal protein L37e 272569  
23 3G6E 28 1 50S ribosomal protein L37e 2238  
24 3CPW 28 Z 50S ribosomal protein L37e 272569  
25 3CCU 27 1 50S ribosomal protein L37e 272569  
26 1VQ6 30 1 50S ribosomal protein L37e 2238  
27 1M90 29 2 RIBOSOMAL PROTEIN L37E 2238  
28 3CCL 27 1 50S ribosomal protein L37e 272569  
29 1YJW 2 1 50S RIBOSOMAL PROTEIN L37E 2238  
30 1YJ9 29 1 50S ribosomal protein L37e 2238  
31 3CD6 27 1 50S ribosomal protein L37e 272569  
32 3CCV 27 1 50S ribosomal protein L37e 272569  
33 3CC4 27 1 50S ribosomal protein L37e 272569  
34 2OTL 28 1 50S ribosomal protein L37e 2238  
35 3G71 28 1 50S ribosomal protein L37e 2238  
36 1FFK 26 X RIBOSOMAL PROTEIN L37E 2238  
37 1VQ4 29 1 50S ribosomal protein L37e 2238  
38 1YJN 29 1 50S ribosomal protein L37e 2238  
39 3CMA 27 1 50S ribosomal protein L37e 2238  
40 3CCS 27 1 50S ribosomal protein L37e 272569  
41 3CCQ 27 1 50S ribosomal protein L37e 272569  
42 3I56 27 1 50S ribosomal protein L37e 2238  
43 3CCR 27 1 50S ribosomal protein L37e 272569  
44 2OTJ 28 1 50S ribosomal protein L37e 2238  
45 1KQS 30 Z RIBOSOMAL PROTEIN L37E 2238  
46 3OW2 28 Z 50S ribosomal protein L37e 2238  
47 3CXC 29 Z RIBOSOMAL PROTEIN L37E 2238  
48 1QVG 29 Z 50S ribosomal protein L37e 2238  
49 3CME 27 1 50S ribosomal protein L37e 2238  
50 2QEX 28 1 50S ribosomal protein L37e 2238  
51 1KC8 28 2 RIBOSOMAL PROTEIN L37E 2238  
52 1N8R 28 2 50S ribosomal protein L37e 2238  
53 1Q81 29 2 50S ribosomal protein L37e 2238  
54 1Q82 29 2 50S ribosomal protein L37e 2238  
55 1QVF 29 Z 50S ribosomal protein L37e 2238  
56 1NJI 28 2 50S ribosomal protein L37e 2238  
57 1K73 28 2 RIBOSOMAL PROTEIN L37E 2238  
58 1K9M 28 2 RIBOSOMAL PROTEIN L37E 2238  
59 1KD1 28 2 RIBOSOMAL PROTEIN L37E 2238  
60 3I55 28 1 50S ribosomal protein L37e 2238  
61 1K8A 28 2 RIBOSOMAL PROTEIN L37E 2238  
62 1Q86 29 2 50S ribosomal protein L37e 2238  
63 1M1K 28 2 RIBOSOMAL PROTEIN L37E 2238  
64 3G4S 28 1 50S ribosomal protein L37e 2238  
65 1W2B 31 Z RIBOSOMAL PROTEIN L37E 2238  
66 2QA4 29 1 50S ribosomal protein L37e 2238  
67 1Q7Y 29 2 50S ribosomal protein L37e 2238  
68 4ADX 2 1 RPL37E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 632
95% 36 68 463
90% 36 68 486
70% 36 68 522
50% 36 118 235
40% 36 118 264
30% 38 324 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48204
95% 1 1 33823
90% 1 1 32338
70% 36 68 515
50% 36 116 241
40% 36 116 272
30% 36 116 293
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 408
90% 36 74 432
70% 36 74 462
50% 36 74 507
40% 36 74 544
30% 37 316 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 430
70% 36 74 460
50% 36 76 486
40% 36 76 520
30% 36 78 511
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 465
90% 36 68 489
70% 36 68 525
50% 36 70 549
40% 36 70 583
30% 36 70 582
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1666
95% 36 68 461
90% 36 68 484
70% 36 68 520
50% 36 68 584
40% 36 70 582
30% 36 71 563
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 467
90% 36 68 491
70% 36 68 527
50% 36 70 552
40% 36 70 587
30% 36 71 565
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 459
90% 36 68 482
70% 36 68 518
50% 36 68 581
40% 36 68 614
30% 36 119 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 411
90% 36 74 435
70% 36 74 466
50% 36 76 488
40% 36 78 503
30% 37 278 69
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 410
90% 36 74 434
70% 36 74 465
50% 36 125 220
40% 36 125 248
30% 36 125 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 309
95% 34 70 445
90% 34 70 465
70% 34 70 500
50% 34 70 553
40% 34 70 588
30% 34 70 584
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 412
90% 36 74 436
70% 36 74 467
50% 36 74 510
40% 36 74 546
30% 36 74 542
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 460
90% 36 68 483
70% 36 68 519
50% 36 68 582
40% 36 70 581
30% 36 71 562
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 469
90% 36 68 493
70% 36 68 529
50% 36 68 589
40% 36 68 621
30% 36 68 614
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51158
95% 3 5 11321
90% 3 5 11140
70% 3 5 10526
50% 3 5 9462
40% 3 5 8631
30% 3 5 7566
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56766
95% 1 1 39596
90% 1 1 37864
70% 3 21 2252
50% 7 30 1533
40% 7 74 413
30% 26 97 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 471
90% 36 68 495
70% 36 68 531
50% 36 69 568
40% 36 69 606
30% 36 69 601
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58037
95% 36 68 472
90% 36 68 496
70% 36 68 532
50% 36 118 236
40% 36 118 265
30% 36 118 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 468
90% 36 68 492
70% 36 68 528
50% 36 68 588
40% 36 68 620
30% 36 117 289
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 458
90% 36 68 481
70% 36 68 517
50% 36 68 579
40% 36 117 269
30% 38 319 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1649
95% 35 67 475
90% 35 67 499
70% 35 67 537
50% 35 115 244
40% 35 117 267
30% 35 117 286
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42501
95% 36 74 400
90% 36 74 424
70% 36 74 455
50% 36 74 501
40% 36 122 253
30% 36 122 272
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7765
95% 36 74 404
90% 36 74 428
70% 36 74 459
50% 36 74 504
40% 36 76 519
30% 36 77 516
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 407
90% 36 74 431
70% 36 74 461
50% 36 74 505
40% 36 122 256
30% 36 122 274
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1677
95% 3 21 2199
90% 36 68 488
70% 36 68 524
50% 51 95 299
40% 58 105 287
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50178
95% 1 1 34929
90% 1 7 8043
70% 3 27 1661
50% 36 74 506
40% 36 78 500
30% 36 78 512
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 409
90% 36 74 433
70% 36 74 463
50% 36 74 508
40% 37 77 511
30% 37 78 513
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.