Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 644
95 % 35 68 783 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 814
70 % 35 68 864
50 % 35 215 204
40 % 45 647 23
30 % 45 647 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50411
95 % 1 1 41742
90 % 1 1 39736
70 % 35 68 865
50 % 35 214 205
40 % 35 214 224
30 % 35 214 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 583
95 % 35 74 718 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 744
70 % 35 74 787
50 % 35 74 843
40 % 35 212 225
30 % 35 212 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 574
95 % 35 74 704 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 731
70 % 35 74 776
50 % 35 76 808
40 % 35 76 837
30 % 35 79 807
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 656
95 % 35 68 799 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 831
70 % 35 68 882
50 % 35 70 889
40 % 35 70 916
30 % 35 70 908
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2983
95 % 35 68 804 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 836
70 % 35 68 886
50 % 35 68 934
40 % 35 72 889
30 % 35 72 892
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 645
95 % 35 68 784 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 815
70 % 35 68 866
50 % 35 70 899
40 % 35 70 930
30 % 35 71 903
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 672
95 % 35 68 789 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 821
70 % 35 68 871
50 % 35 68 924
40 % 35 68 951
30 % 35 212 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 586
95 % 35 74 719 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 747
70 % 35 74 792
50 % 35 77 799
40 % 44 496 40
30 % 44 496 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 579
95 % 35 74 711 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 737
70 % 35 74 781
50 % 35 221 203
40 % 35 222 218
30 % 35 222 237
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 618
95 % 33 70 757 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 789
70 % 33 70 831
50 % 33 70 890
40 % 33 70 917
30 % 33 70 909
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 580
95 % 35 74 712 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 738
70 % 35 74 782
50 % 35 74 835
40 % 44 451 51
30 % 44 477 63
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 649
95 % 35 68 790 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 822
70 % 35 68 872
50 % 35 68 925
40 % 35 70 920
30 % 35 71 902
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 646
95 % 35 68 800 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 832
70 % 35 68 883
50 % 35 68 932
40 % 35 68 958
30 % 35 70 915
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60944
95 % 3 5 15930 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15585
70 % 3 5 14503
50 % 3 5 12802
40 % 3 5 11469
30 % 3 5 9762
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2890
95 % 3 21 3232 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3293
70 % 3 21 3237
50 % 7 30 2204
40 % 7 164 284
30 % 9 168 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 657
95 % 35 68 785 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 816
70 % 35 68 867
50 % 35 69 902
40 % 35 69 934
30 % 35 69 920
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57367
95 % 35 68 793 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 825
70 % 35 68 876
50 % 35 207 209
40 % 35 207 229
30 % 35 207 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 643
95 % 35 68 782 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 813
70 % 35 68 863
50 % 35 68 918
40 % 35 202 234
30 % 35 202 251
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 654
95 % 35 68 797 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 829
70 % 35 68 861
50 % 35 68 930
40 % 35 212 226
30 % 45 636 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2336
95 % 35 68 798 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 830
70 % 35 68 880
50 % 35 205 210
40 % 35 205 230
30 % 35 205 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63375
95 % 35 74 716 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 742
70 % 35 74 785
50 % 35 74 842
40 % 35 220 219
30 % 35 220 239
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 930
95 % 35 74 703 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 730
70 % 35 74 775
50 % 35 74 828
40 % 35 76 836
30 % 36 78 817
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 582
95 % 35 74 714 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 741
70 % 35 74 784
50 % 35 74 840
40 % 36 214 221
30 % 36 214 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2905
95 % 3 21 3244 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 812
70 % 35 68 862
50 % 51 108 413
40 % 58 133 334
30 % 72 292 157
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63373
95 % 1 1 51597
90 % 1 7 11784
70 % 3 27 2528
50 % 35 74 829
40 % 35 79 802
30 % 35 79 806
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 578
95 % 35 74 709 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 727
70 % 35 74 772
50 % 35 74 832
40 % 36 78 824
30 % 36 78 821

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 29 1 50S ribosomal protein L37e 2238
2 1VQO 29 1 50S ribosomal protein L37e 2238
3 1VQ8 29 1 50S ribosomal protein L37e 2238
4 1S72 29 1 50S ribosomal protein L37e 2238
5 1JJ2 28 Z RIBOSOMAL PROTEIN L37E 2238
6 1YHQ 29 1 50S ribosomal protein L37e 2238
7 1VQP 29 1 50S ribosomal protein L37e 2238
8 1VQM 29 1 50S ribosomal protein L37e 2238
9 3CC2 27 1 50S ribosomal protein L37e 2238
10 1VQL 29 1 50S ribosomal protein L37e 2238
11 1VQK 29 1 50S ribosomal protein L37e 2238
12 1VQN 30 1 50S ribosomal protein L37e 2238
13 1YIJ 29 1 50S ribosomal protein L37e 2238
14 1YI2 29 1 50S ribosomal protein L37e 2238
15 1VQ9 29 1 50S ribosomal protein L37e 2238
16 1VQ7 29 1 50S ribosomal protein L37e 2238
17 3CCM 27 1 50S ribosomal protein L37e 2238
18 1VQ5 29 1 50S ribosomal protein L37e 2238
19 3CC7 27 1 50S ribosomal protein L37e 2238
20 1YIT 2 1 50S RIBOSOMAL PROTEIN L37E 2238
21 3CCE 27 1 50S ribosomal protein L37e 2238
22 3G6E 28 1 50S ribosomal protein L37e 2238
23 3CPW 28 Z 50S ribosomal protein L37e 2238
24 3CCU 27 1 50S ribosomal protein L37e 2238
25 1VQ6 30 1 50S ribosomal protein L37e 2238
26 1M90 29 2 RIBOSOMAL PROTEIN L37E 2238
27 3CCL 27 1 50S ribosomal protein L37e 2238
28 1YJW 2 1 50S RIBOSOMAL PROTEIN L37E 2238
29 1YJ9 29 1 50S ribosomal protein L37e 2238
30 3CD6 27 1 50S ribosomal protein L37e 2238
31 3CCV 27 1 50S ribosomal protein L37e 2238
32 3CC4 27 1 50S ribosomal protein L37e 2238
33 2OTL 28 1 50S ribosomal protein L37e 2238
34 3G71 28 1 50S ribosomal protein L37e 2238
35 1FFK 26 X RIBOSOMAL PROTEIN L37E 2238
36 1VQ4 29 1 50S ribosomal protein L37e 2238
37 1YJN 29 1 50S ribosomal protein L37e 2238
38 3CMA 27 1 50S ribosomal protein L37e 2238
39 3CCS 27 1 50S ribosomal protein L37e 2238
40 3CCQ 27 1 50S ribosomal protein L37e 2238
41 3I56 27 1 50S ribosomal protein L37e 2238
42 3CCR 27 1 50S ribosomal protein L37e 2238
43 2OTJ 28 1 50S ribosomal protein L37e 2238
44 1KQS 30 Z RIBOSOMAL PROTEIN L37E 2238
45 3OW2 28 Z 50S ribosomal protein L37e 2238
46 3CXC 29 Z RIBOSOMAL PROTEIN L37E 2238
47 1QVG 29 Z 50S ribosomal protein L37e 2238
48 3CME 27 1 50S ribosomal protein L37e 2238
49 2QEX 28 1 50S ribosomal protein L37e 2238
50 1KC8 28 2 RIBOSOMAL PROTEIN L37E 2238
51 1N8R 28 2 50S ribosomal protein L37e 2238
52 1Q81 29 2 50S ribosomal protein L37e 2238
53 1Q82 29 2 50S ribosomal protein L37e 2238
54 1QVF 29 Z 50S ribosomal protein L37e 2238
55 1NJI 28 2 50S ribosomal protein L37e 2238
56 1K73 28 2 RIBOSOMAL PROTEIN L37E 2238
57 1K9M 28 2 RIBOSOMAL PROTEIN L37E 2238
58 1KD1 28 2 RIBOSOMAL PROTEIN L37E 2238
59 3I55 28 1 50S ribosomal protein L37e 2238
60 1K8A 28 2 RIBOSOMAL PROTEIN L37E 2238
61 1Q86 29 2 50S ribosomal protein L37e 2238
62 1M1K 28 2 RIBOSOMAL PROTEIN L37E 2238
63 3G4S 28 1 50S ribosomal protein L37e 2238
64 3CCJ 27 1 50S ribosomal protein L37e 2238
65 1W2B 31 Z RIBOSOMAL PROTEIN L37E 2238
66 2QA4 29 1 50S ribosomal protein L37e 2238
67 1Q7Y 29 2 50S ribosomal protein L37e 2238
68 4ADX 2 1 RPL37E 145262