Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 578
95 % 35 68 714 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 743
70 % 35 68 783
50 % 35 190 200
40 % 43 557 21
30 % 43 557 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46604
95 % 1 1 38720
90 % 1 1 36946
70 % 35 68 784
50 % 35 187 204
40 % 35 187 226
30 % 35 187 244
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 518
95 % 35 74 645 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 666
70 % 35 74 712
50 % 35 74 769
40 % 35 188 223
30 % 35 188 242
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 506
95 % 35 74 630 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 655
70 % 35 74 700
50 % 35 76 739
40 % 35 76 769
30 % 35 79 738
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 586
95 % 35 68 726 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 798
50 % 35 70 810
40 % 35 70 844
30 % 35 70 830
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2721
95 % 35 68 728 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 802
50 % 35 68 851
40 % 35 72 820
30 % 35 72 817
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 579
95 % 35 68 715 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 744
70 % 35 68 785
50 % 35 70 819
40 % 35 70 850
30 % 35 71 825
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 599
95 % 35 68 718 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 747
70 % 35 68 791
50 % 35 68 839
40 % 35 68 866
30 % 35 185 245
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 521
95 % 35 74 647 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 669
70 % 35 74 717
50 % 35 76 746
40 % 42 430 45
30 % 42 430 64
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 512
95 % 35 74 637 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 659
70 % 35 74 705
50 % 35 194 198
40 % 35 195 216
30 % 35 195 234
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 550
95 % 33 70 688 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 716
70 % 33 70 756
50 % 33 70 812
40 % 33 70 841
30 % 33 70 832
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 513
95 % 35 74 638 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 660
70 % 35 74 706
50 % 35 74 763
40 % 42 391 57
30 % 42 417 69
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 581
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 748
70 % 35 68 792
50 % 35 68 840
40 % 35 70 842
30 % 35 71 824
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 587
95 % 35 68 727 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 799
50 % 35 68 848
40 % 35 68 872
30 % 35 70 831
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56536
95 % 3 5 14535 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14261
70 % 3 5 13373
50 % 3 5 11855
40 % 3 5 10654
30 % 3 5 9067
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2624
95 % 3 21 2956
90 % 3 21 3003
70 % 3 21 2958
50 % 7 30 2043
40 % 7 140 294
30 % 9 144 297
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 588
95 % 35 68 716 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 745
70 % 35 68 786
50 % 35 69 822
40 % 35 69 853
30 % 35 69 840
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56535
95 % 35 68 717 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 746
70 % 35 68 790
50 % 35 183 206
40 % 35 183 230
30 % 35 183 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 577
95 % 35 68 713 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 742
70 % 35 68 782
50 % 35 68 835
40 % 35 179 234
30 % 35 179 249
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 584
95 % 35 68 724 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 753
70 % 35 68 780
50 % 35 68 845
40 % 35 187 224
30 % 43 547 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2639
95 % 35 68 723 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 752
70 % 35 68 796
50 % 35 181 209
40 % 35 181 231
30 % 35 181 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58761
95 % 35 74 643 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 664
70 % 35 74 709
50 % 35 74 767
40 % 35 194 217
30 % 35 194 235
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 829
95 % 35 74 634 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 657
70 % 35 74 702
50 % 35 74 759
40 % 35 76 770
30 % 36 78 755
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 516
95 % 35 74 640 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 663
70 % 35 74 708
50 % 35 74 766
40 % 36 190 221
30 % 36 190 241
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2638
95 % 3 21 2969 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 741
70 % 35 68 781
50 % 50 105 380
40 % 57 126 302
30 % 71 260 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58758
95 % 1 1 47989
90 % 1 7 10615
70 % 3 27 2286
50 % 35 74 761
40 % 35 79 737
30 % 35 79 745
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 511
95 % 35 74 635
90 % 35 74 654
70 % 35 74 699
50 % 35 74 760
40 % 36 78 759
30 % 36 78 756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 29 1 50S ribosomal protein L37e 2238
2 1VQO 29 1 50S ribosomal protein L37e 2238
3 1VQ8 29 1 50S ribosomal protein L37e 2238
4 1S72 29 1 50S ribosomal protein L37e 2238
5 1JJ2 28 Z RIBOSOMAL PROTEIN L37E 2238
6 1YHQ 29 1 50S ribosomal protein L37e 2238
7 1VQP 29 1 50S ribosomal protein L37e 2238
8 1VQM 29 1 50S ribosomal protein L37e 2238
9 3CC2 27 1 50S ribosomal protein L37e 2238
10 1VQL 29 1 50S ribosomal protein L37e 2238
11 1VQK 29 1 50S ribosomal protein L37e 2238
12 1VQN 30 1 50S ribosomal protein L37e 2238
13 1YIJ 29 1 50S ribosomal protein L37e 2238
14 1YI2 29 1 50S ribosomal protein L37e 2238
15 1VQ9 29 1 50S ribosomal protein L37e 2238
16 1VQ7 29 1 50S ribosomal protein L37e 2238
17 3CCM 27 1 50S ribosomal protein L37e 2238
18 1VQ5 29 1 50S ribosomal protein L37e 2238
19 3CC7 27 1 50S ribosomal protein L37e 2238
20 1YIT 2 1 50S RIBOSOMAL PROTEIN L37E 2238
21 3CCE 27 1 50S ribosomal protein L37e 2238
22 3G6E 28 1 50S ribosomal protein L37e 2238
23 3CPW 28 Z 50S ribosomal protein L37e 2238
24 3CCU 27 1 50S ribosomal protein L37e 2238
25 1VQ6 30 1 50S ribosomal protein L37e 2238
26 1M90 29 2 RIBOSOMAL PROTEIN L37E 2238
27 3CCL 27 1 50S ribosomal protein L37e 2238
28 1YJW 2 1 50S RIBOSOMAL PROTEIN L37E 2238
29 1YJ9 29 1 50S ribosomal protein L37e 2238
30 3CD6 27 1 50S ribosomal protein L37e 2238
31 3CCV 27 1 50S ribosomal protein L37e 2238
32 3CC4 27 1 50S ribosomal protein L37e 2238
33 2OTL 28 1 50S ribosomal protein L37e 2238
34 3G71 28 1 50S ribosomal protein L37e 2238
35 1FFK 26 X RIBOSOMAL PROTEIN L37E 2238
36 1VQ4 29 1 50S ribosomal protein L37e 2238
37 1YJN 29 1 50S ribosomal protein L37e 2238
38 3CMA 27 1 50S ribosomal protein L37e 2238
39 3CCS 27 1 50S ribosomal protein L37e 2238
40 3CCQ 27 1 50S ribosomal protein L37e 2238
41 3I56 27 1 50S ribosomal protein L37e 2238
42 3CCR 27 1 50S ribosomal protein L37e 2238
43 2OTJ 28 1 50S ribosomal protein L37e 2238
44 1KQS 30 Z RIBOSOMAL PROTEIN L37E 2238
45 3OW2 28 Z 50S ribosomal protein L37e 2238
46 3CXC 29 Z RIBOSOMAL PROTEIN L37E 2238
47 1QVG 29 Z 50S ribosomal protein L37e 2238
48 3CME 27 1 50S ribosomal protein L37e 2238
49 2QEX 28 1 50S ribosomal protein L37e 2238
50 1KC8 28 2 RIBOSOMAL PROTEIN L37E 2238
51 1N8R 28 2 50S ribosomal protein L37e 2238
52 1Q81 29 2 50S ribosomal protein L37e 2238
53 1Q82 29 2 50S ribosomal protein L37e 2238
54 1QVF 29 Z 50S ribosomal protein L37e 2238
55 1NJI 28 2 50S ribosomal protein L37e 2238
56 1K73 28 2 RIBOSOMAL PROTEIN L37E 2238
57 1K9M 28 2 RIBOSOMAL PROTEIN L37E 2238
58 1KD1 28 2 RIBOSOMAL PROTEIN L37E 2238
59 3I55 28 1 50S ribosomal protein L37e 2238
60 1K8A 28 2 RIBOSOMAL PROTEIN L37E 2238
61 1Q86 29 2 50S ribosomal protein L37e 2238
62 1M1K 28 2 RIBOSOMAL PROTEIN L37E 2238
63 3G4S 28 1 50S ribosomal protein L37e 2238
64 3CCJ 27 1 50S ribosomal protein L37e 2238
65 1W2B 31 Z RIBOSOMAL PROTEIN L37E 2238
66 2QA4 29 1 50S ribosomal protein L37e 2238
67 1Q7Y 29 2 50S ribosomal protein L37e 2238
68 4ADX 2 1 RPL37E 145262
69 4V7H 49 BY 60S ribosomal protein L37(A) 5541