Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 829
95 % 35 68 665
90 % 35 68 692
70 % 35 68 744
50 % 35 176 200
40 % 35 176 221
30 % 43 513 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59262
95 % 1 1 41301
90 % 1 1 39301
70 % 35 68 736
50 % 35 172 209
40 % 35 172 233
30 % 35 172 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 418
95 % 35 74 588
90 % 35 74 619
70 % 35 74 651
50 % 35 74 696
40 % 35 74 735
30 % 42 495 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 416
95 % 35 74 586
90 % 35 74 617
70 % 35 74 648
50 % 35 76 666
40 % 35 76 709
30 % 35 79 678
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 475
95 % 35 68 666
90 % 35 68 694
70 % 35 68 746
50 % 35 70 763
40 % 35 70 799
30 % 35 70 788
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2182
95 % 35 68 664
90 % 35 68 690
70 % 35 68 742
50 % 35 68 793
40 % 35 72 764
30 % 35 72 755
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 476
95 % 35 68 668
90 % 35 68 696
70 % 35 68 749
50 % 35 70 765
40 % 35 70 801
30 % 35 71 772
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 489
95 % 35 68 662
90 % 35 68 688
70 % 35 68 739
50 % 35 68 790
40 % 35 68 825
30 % 35 175 232
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 423
95 % 35 74 592
90 % 35 74 623
70 % 35 74 657
50 % 35 76 670
40 % 35 78 692
30 % 42 402 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 422
95 % 35 74 591
90 % 35 74 622
70 % 35 74 656
50 % 35 180 199
40 % 35 180 217
30 % 35 180 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 454
95 % 33 70 638
90 % 33 70 663
70 % 33 70 717
50 % 33 70 766
40 % 33 70 804
30 % 33 70 792
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 424
95 % 35 74 593
90 % 35 74 624
70 % 35 74 658
50 % 35 74 701
40 % 35 74 738
30 % 35 74 730
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 473
95 % 35 68 663
90 % 35 68 689
70 % 35 68 740
50 % 35 68 791
40 % 35 70 796
30 % 35 71 769
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 478
95 % 35 68 670
90 % 35 68 698
70 % 35 68 751
50 % 35 68 796
40 % 35 68 829
30 % 35 68 814
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62617
95 % 3 5 14045
90 % 3 5 13782
70 % 3 5 12926
50 % 3 5 11528
40 % 3 5 10459
30 % 3 5 9060
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68921
95 % 1 1 47746
90 % 1 1 45380
70 % 3 21 2865
50 % 7 30 1917
40 % 7 129 302
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 480
95 % 35 68 673
90 % 35 68 701
70 % 35 68 755
50 % 35 69 778
40 % 35 69 815
30 % 35 69 804
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70331
95 % 35 68 674
90 % 35 68 702
70 % 35 68 756
50 % 35 173 205
40 % 35 173 228
30 % 35 173 235
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 477
95 % 35 68 669
90 % 35 68 697
70 % 35 68 750
50 % 35 68 795
40 % 35 68 828
30 % 35 169 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 472
95 % 35 68 661
90 % 35 68 687
70 % 35 68 738
50 % 35 68 789
40 % 35 174 226
30 % 43 504 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2166
95 % 35 68 658
90 % 35 68 684
70 % 35 68 734
50 % 35 171 208
40 % 35 173 227
30 % 35 173 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52492
95 % 35 74 577
90 % 35 74 609
70 % 35 74 643
50 % 35 74 689
40 % 35 180 215
30 % 35 180 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9908
95 % 35 74 582
90 % 35 74 615
70 % 35 74 646
50 % 35 74 691
40 % 35 76 707
30 % 36 78 686
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 417
95 % 35 74 587
90 % 35 74 618
70 % 35 74 649
50 % 35 74 694
40 % 36 180 216
30 % 36 180 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2194
95 % 3 21 2836
90 % 35 68 693
70 % 35 68 745
50 % 50 105 322
40 % 57 122 280
30 % 57 124 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61521
95 % 1 1 42557
90 % 1 7 10001
70 % 3 27 2134
50 % 35 74 695
40 % 35 79 679
30 % 35 79 680
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 419
95 % 35 74 589
90 % 35 74 620
70 % 35 74 654
50 % 35 74 700
40 % 36 77 702
30 % 36 78 689

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
19 1N8R 27 1 50S ribosomal protein L37AE 2238
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
26 1NJI 27 1 50S ribosomal protein L37AE 2238
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
37 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
38 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
39 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
40 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
41 1Q86 28 1 L37Ae 50S ribosomal protein 2238
42 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
43 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
44 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
45 3G4S 27 Z 50S ribosomal protein L37Ae 2238
46 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
47 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
48 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
49 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
50 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
51 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
52 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
53 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
54 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
55 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
56 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
57 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
58 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
59 5UMD 44 h 60S ribosomal protein L37a 5833
60 5MC6 60 AT 60S ribosomal protein L43-A 4932
61 5H4P 41 p 60S ribosomal protein L43-A 4932
62 5M1J 65 p5 60S ribosomal protein L43-B 4932
63 5LZS 41 p Uncharacterized protein 9986
64 5LZT 41 p eL43 9986
65 5LZU 41 p eL43 9986
66 5LZV 41 p eL43 9986
67 5LZW 41 p eL43 9986
68 5LZX 41 p eL43 9986
69 5LZY 41 p eL43 9986
70 5LZZ 41 p eL43 9986
71 5T62 44 R 60S ribosomal protein L43-A 4932
72 5T6R 43 R 60S ribosomal protein L43-A 4932
73 5T5H 38 o 60S ribosomal protein L37a 5693
74 5T2A 39 m eL43 5661
75 5T2C 28 j 60S ribosomal protein L37a 9606
76 5LKS 44 Lp 60S ribosomal protein L37a 9606
77 5JUO 47 UA eL43 (yeast L43) 4932
78 5JUP 47 UA eL43 (yeast L43) 4932
79 5JUS 47 UA eL43 (yeast L43) 4932
80 5JUT 47 UA eL43 (yeast L43) 4932
81 5JUU 47 UA eL43 (yeast L43) 4932
82 5JCS 28 p 60S ribosomal protein L43-A 4932
83 5IT7 44 pp KLLA0E05941p 28985
84 3JCT 42 p 60S ribosomal protein L43-A 4932
85 3JCS 47 m ribosomal protein L43e 5661
86 5GAK 13 D 60S ribosomal protein L43-A 4932
87 5FL8 40 p 60S ribosomal protein L43-A 4932
88 5APN 43 p 60S ribosomal protein L43-A 4932
89 5APO 43 p 60S ribosomal protein L43-A 4932
90 3JBN 52 Ah 60S ribosomal protein eL43 5833
91 3JBO 55 Ah 60S ribosomal protein eL43 5833
92 3JBP 52 Ah 60S ribosomal protein eL43 5833
93 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
94 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
95 3JAG 41 p eL43 9986
96 3JAH 41 p eL43 9986
97 3JAI 41 p eL43 9986
98 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
99 5AJ0 44 Ap 60S ribosomal protein L37a 9606
100 3J92 40 p eL43 9986
101 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
102 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
103 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
104 3J7O 44 p Ribosomal protein eL43 9823
105 3J7P 45 p Ribosomal protein eL43 9823
106 3J7Q 44 p Ribosomal protein eL43 9823
107 3J7R 44 p Ribosomal protein eL43 9823
108 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
109 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
110 3J79 44 h 60S ribosomal protein eL43 5833
111 3J77 43 93 60S ribosomal protein L43 4932
112 3J78 43 93 60S ribosomal protein L43 4932
113 3J6X 45 83 60S ribosomal protein L43 4932
114 3J6Y 45 83 60S ribosomal protein L43 4932
115 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
116 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
117 4V7F 40 k 60S ribosomal protein L43 4932
118 4V7E 74 Cp 60S ribosomal protein L43E 4565
119 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
120 4V6W 77 Cp 60S ribosomal protein L37a 7227
121 4V6X 77 Cp 60S ribosomal protein L37a 9606
122 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
123 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
124 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
125 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
126 4V7H 24 B9 60S ribosomal protein L43 5541
127 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
128 1YSH 5 D ribosomal protein L37a 4530
129 4V4B 47 B9 60S ribosomal protein L43 4932