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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 413 Members. Sequence cutoff: 40% Cluster size: 77 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1S72 28 Z 50S ribosomal protein L37Ae 2238  
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238  
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238  
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238  
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238  
6 3G71 27 Z 50S ribosomal protein L37Ae 2238  
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238  
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238  
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 559292  
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238  
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238  
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 559292  
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238  
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238  
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238  
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 559292  
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 559292  
19 1N8R 27 1 50S ribosomal protein L37AE 2238  
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 559292  
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238  
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238  
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238  
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 559292  
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 559292  
26 1NJI 27 1 50S ribosomal protein L37AE 2238  
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 559292  
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 559292  
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 559292  
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 559292  
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 559292  
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 559292  
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
36 4U51 79 Q3, q3 60S ribosomal protein L43-A 559292  
37 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
38 4U53 79 Q3, q3 60S ribosomal protein L43-A 559292  
39 1Q86 28 1 L37Ae 50S ribosomal protein 2238  
40 4U50 79 Q3, q3 60S ribosomal protein L43-A 559292  
41 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
42 3G4S 27 Z 50S ribosomal protein L37Ae 2238  
43 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238  
44 4U56 79 Q3, q3 60S ribosomal protein L43-A 559292  
45 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238  
46 4U4O 79 Q3, q3 60S ribosomal protein L43-A 559292  
47 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932  
48 3J92 40 p eL43 9986  
49 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986  
50 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986  
51 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565  
52 3J7O 44 p Ribosomal protein eL43 9823  
53 3J7P 45 p Ribosomal protein eL43 9823  
54 3J7Q 44 p Ribosomal protein eL43 9823  
55 3J7R 44 p Ribosomal protein eL43 9823  
56 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986  
57 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986  
58 3J79 44 h 60S ribosomal protein eL43 36329  
59 3J77 43 93 60S ribosomal protein L43 4932  
60 3J78 43 93 60S ribosomal protein L43 4932  
61 3J6X 45 83 60S ribosomal protein L43 580240  
62 3J6Y 45 83 60S ribosomal protein L43 580240  
63 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986  
64 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985  
65 4V7F 40 k 60S ribosomal protein L43 4932  
66 4V7E 74 Cp 60S ribosomal protein L43E 4565  
67 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190  
68 4V6W 77 Cp 60S ribosomal protein L37a 7227  
69 4V6X 77 Cp 60S ribosomal protein L37a 9606  
70 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431  
71 4V6U 45 Bi 50S ribosomal protein L37Ae 186497  
72 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 559292  
73 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932  
74 4V7H 24 B9 60S ribosomal protein L43 5541  
75 4V5Z 81 Bz 60S Ribosomal protein L37a 9615  
76 1YSH 5 D ribosomal protein L37a 4530  
77 4V4B 47 B9 60S ribosomal protein L43 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 661
95% 36 68 472
90% 36 68 494
70% 36 68 534
50% 36 121 237
40% 36 121 263
30% 41 334 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49266
95% 1 1 34547
90% 1 1 33021
70% 36 68 526
50% 36 119 242
40% 36 119 270
30% 36 119 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 439
70% 36 74 468
50% 36 74 515
40% 36 74 556
30% 40 326 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 437
70% 36 74 466
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 474
90% 36 68 497
70% 36 68 537
50% 36 70 573
40% 36 70 606
30% 36 70 607
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1711
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 607
40% 36 70 604
30% 36 71 587
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 476
90% 36 68 499
70% 36 68 539
50% 36 70 577
40% 36 70 611
30% 36 71 590
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 468
90% 36 68 490
70% 36 68 530
50% 36 68 604
40% 36 68 638
30% 36 122 278
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 442
70% 36 74 472
50% 36 76 495
40% 36 78 514
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 452
90% 34 70 473
70% 34 70 509
50% 34 70 578
40% 34 70 612
30% 34 70 610
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 443
70% 36 74 473
50% 36 74 519
40% 36 74 558
30% 36 74 554
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 605
40% 36 70 603
30% 36 71 586
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 611
40% 36 68 643
30% 36 68 637
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52248
95% 3 5 11516
90% 3 5 11330
70% 3 5 10718
50% 3 5 9629
40% 3 5 8789
30% 3 5 7691
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57922
95% 1 1 40373
90% 1 1 38587
70% 3 21 2305
50% 7 30 1572
40% 7 77 413
30% 26 100 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 69 595
40% 36 69 628
30% 36 69 625
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59211
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 121 238
40% 36 121 264
30% 36 121 281
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 500
70% 36 68 540
50% 36 68 610
40% 36 68 642
30% 36 120 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 467
90% 36 68 489
70% 36 68 529
50% 36 68 603
40% 36 120 267
30% 41 329 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1694
95% 36 68 464
90% 36 68 487
70% 36 68 525
50% 36 119 241
40% 36 121 262
30% 36 121 279
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43475
95% 36 74 407
90% 36 74 431
70% 36 74 462
50% 36 74 509
40% 36 125 252
30% 36 125 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7974
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 74 511
40% 36 76 530
30% 36 77 524
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 438
70% 36 74 467
50% 36 74 513
40% 36 126 251
30% 36 126 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 3 21 2254
90% 36 68 496
70% 36 68 536
50% 51 95 309
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51264
95% 1 1 35664
90% 1 7 8187
70% 3 27 1696
50% 36 74 514
40% 36 79 502
30% 36 79 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 440
70% 36 74 469
50% 36 74 518
40% 37 77 523
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.