Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 891
95 % 35 68 715 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 747
70 % 35 68 794
50 % 35 185 198
40 % 43 552 20
30 % 43 552 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62199
95 % 1 1 43416
90 % 1 1 41220
70 % 35 68 786
50 % 35 181 206
40 % 35 181 224
30 % 35 181 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 457
95 % 35 74 634 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 662
70 % 35 74 707
50 % 35 74 758
40 % 35 74 794
30 % 42 532 39
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 455
95 % 35 74 632 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 660
70 % 35 74 704
50 % 35 76 732
40 % 35 76 766
30 % 35 79 727
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 526
95 % 35 68 717 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 750
70 % 35 68 797
50 % 35 70 807
40 % 35 70 847
30 % 35 70 829
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2335
95 % 35 68 713 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 746
70 % 35 68 793
50 % 35 68 838
40 % 35 72 820
30 % 35 72 807
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 527
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 799
50 % 35 70 809
40 % 35 70 848
30 % 35 71 817
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 539
95 % 35 68 711 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 744
70 % 35 68 790
50 % 35 68 835
40 % 35 68 871
30 % 35 184 227
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 462
95 % 35 74 638 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 666
70 % 35 74 712
50 % 35 76 736
40 % 35 78 748
30 % 42 430 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 461
95 % 35 74 637 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 665
70 % 35 74 711
50 % 35 188 195
40 % 35 189 215
30 % 35 189 223
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 495
95 % 33 70 688 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 717
70 % 33 70 762
50 % 33 70 810
40 % 33 70 849
30 % 33 70 831
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 463
95 % 35 74 639 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 667
70 % 35 74 713
50 % 35 74 762
40 % 42 391 53
30 % 42 417 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 523
95 % 35 68 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 745
70 % 35 68 791
50 % 35 68 836
40 % 35 70 846
30 % 35 71 815
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 721 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 754
70 % 35 68 801
50 % 35 68 843
40 % 35 68 875
30 % 35 68 856
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65702
95 % 3 5 14782 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14509
70 % 3 5 13625
50 % 3 5 12099
40 % 3 5 10968
30 % 3 5 9524
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72229
95 % 1 1 50109
90 % 1 1 47525
70 % 3 21 3025
50 % 7 30 2020
40 % 7 139 279
30 % 26 162 254
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 530
95 % 35 68 722 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 35 69 823
40 % 35 69 859
30 % 35 69 844
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73686
95 % 35 68 723 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 35 182 203
40 % 35 182 223
30 % 35 182 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 528
95 % 35 68 720 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 753
70 % 35 68 800
50 % 35 68 842
40 % 35 68 874
30 % 35 178 236
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 522
95 % 35 68 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 742
70 % 35 68 788
50 % 35 68 834
40 % 35 183 221
30 % 43 543 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2317
95 % 35 68 708 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 740
70 % 35 68 785
50 % 35 180 205
40 % 35 182 222
30 % 35 182 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55142
95 % 35 74 623 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 654
70 % 35 74 699
50 % 35 74 749
40 % 35 189 213
30 % 35 189 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10446
95 % 35 74 626 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 657
70 % 35 74 701
50 % 35 74 751
40 % 35 76 762
30 % 36 78 745
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 456
95 % 35 74 633 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 661
70 % 35 74 705
50 % 35 74 756
40 % 36 189 214
30 % 36 189 222
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2348
95 % 3 21 2995 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 749
70 % 35 68 796
50 % 50 105 379
40 % 57 126 287
30 % 57 128 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64543
95 % 1 1 44727
90 % 1 7 10539
70 % 3 27 2250
50 % 35 74 757
40 % 35 79 733
30 % 35 79 731
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 459
95 % 35 74 635
90 % 35 74 663
70 % 35 74 709
50 % 35 74 761
40 % 36 77 756
30 % 36 78 749

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
18 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
19 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
20 1N8R 27 1 50S ribosomal protein L37AE 2238
21 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
22 1Q81 28 1 L37Ae 50S ribosomal protein 2238
23 1Q82 28 1 L37Ae 50S ribosomal protein 2238
24 1QVF 28 Y L37Ae 50S ribosomal protein 2238
25 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
26 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
27 1NJI 27 1 50S ribosomal protein L37AE 2238
28 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
29 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
30 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
31 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
35 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
37 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
38 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
39 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
40 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
41 5OBM 44 Q3, q3 60S ribosomal protein L43-A 4932
42 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
43 1Q86 28 1 L37Ae 50S ribosomal protein 2238
44 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
45 5NDV 44 Q3, q3 60S ribosomal protein L43-A 4932
46 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
47 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
48 3G4S 27 Z 50S ribosomal protein L37Ae 2238
49 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
50 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
51 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
52 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
53 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
54 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
55 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
56 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
57 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
58 5NDW 67 Q3, q3 60S ribosomal protein L43-A 4932
59 4V8P 46 BY, CY, EY, GY RPL37A 5911
60 5NDG 79 Q3, q3 60S ribosomal protein L43-A 4932
61 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
62 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
63 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
64 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
65 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
66 6AZ3 41 o ribosomal protein eL43 5661
67 5XY3 43 p Uncharacterized protein 5722
68 5XXB 43 o Ribosomal protein eL43 5811
69 5UMD 44 h 60S ribosomal protein L37a 5833
70 5MC6 60 AT 60S ribosomal protein L43-A 4932
71 5H4P 41 p 60S ribosomal protein L43-A 4932
72 5M1J 65 p5 60S ribosomal protein L43-B 4932
73 5LZS 41 p Uncharacterized protein 9986
74 5LZT 41 p eL43 9986
75 5LZU 41 p eL43 9986
76 5LZV 41 p eL43 9986
77 5LZW 41 p eL43 9986
78 5LZX 41 p eL43 9986
79 5LZY 41 p eL43 9986
80 5LZZ 41 p eL43 9986
81 5T62 44 R 60S ribosomal protein L43-A 4932
82 5T6R 43 R 60S ribosomal protein L43-A 4932
83 5T5H 38 o 60S ribosomal protein L37a 5693
84 5T2A 39 m eL43 5661
85 5T2C 28 j 60S ribosomal protein L37a 9606
86 5LKS 44 Lp 60S ribosomal protein L37a 9606
87 5JUO 47 UA eL43 (yeast L43) 4932
88 5JUP 47 UA eL43 (yeast L43) 4932
89 5JUS 47 UA eL43 (yeast L43) 4932
90 5JUT 47 UA eL43 (yeast L43) 4932
91 5JUU 47 UA eL43 (yeast L43) 4932
92 5JCS 28 p 60S ribosomal protein L43-A 4932
93 5IT7 44 pp KLLA0E05941p 28985
94 3JCT 42 p 60S ribosomal protein L43-A 4932
95 3JCS 47 m ribosomal protein L43e 5661
96 5GAK 13 D 60S ribosomal protein L43-A 4932
97 5FL8 40 p 60S ribosomal protein L43-A 4932
98 5APN 43 p 60S ribosomal protein L43-A 4932
99 5APO 43 p 60S ribosomal protein L43-A 4932
100 3JBN 52 Ah 60S ribosomal protein eL43 5833
101 3JBO 55 Ah 60S ribosomal protein eL43 5833
102 3JBP 52 Ah 60S ribosomal protein eL43 5833
103 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
104 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
105 3JAG 41 p eL43 9986
106 3JAH 41 p eL43 9986
107 3JAI 41 p eL43 9986
108 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
109 5AJ0 44 Ap 60S ribosomal protein L37a 9606
110 3J92 40 p eL43 9986
111 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
112 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
113 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
114 3J7O 44 p Ribosomal protein eL43 9823
115 3J7P 45 p Ribosomal protein eL43 9823
116 3J7Q 44 p Ribosomal protein eL43 9823
117 3J7R 44 p Ribosomal protein eL43 9823
118 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
119 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
120 3J79 44 h 60S ribosomal protein eL43 5833
121 3J77 43 93 60S ribosomal protein L43 4932
122 3J78 43 93 60S ribosomal protein L43 4932
123 3J6X 45 83 60S ribosomal protein L43 4932
124 3J6Y 45 83 60S ribosomal protein L43 4932
125 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
126 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
127 4V7F 40 k 60S ribosomal protein L43 4932
128 4V7E 74 Cp 60S ribosomal protein L43E 4565
129 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
130 4V6W 77 Cp 60S ribosomal protein L37a 7227
131 4V6X 77 Cp 60S ribosomal protein L37a 9606
132 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
133 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
134 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
135 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
136 4V7H 24 B9 60S ribosomal protein L43 5541
137 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
138 1YSH 5 D ribosomal protein L37a 4530
139 4V4B 47 B9 60S ribosomal protein L43 4932