Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 592
95 % 35 68 728 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 800
50 % 35 197 203
40 % 45 587 21
30 % 45 587 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47664
95 % 1 1 39562
90 % 1 1 37708
70 % 35 68 801
50 % 35 196 204
40 % 35 196 221
30 % 35 196 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 524
95 % 35 74 658 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 681
70 % 35 74 726
50 % 35 74 788
40 % 35 194 222
30 % 35 194 242
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 516
95 % 35 74 643 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 668
70 % 35 74 714
50 % 35 76 755
40 % 35 76 790
30 % 35 79 757
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 605
95 % 35 68 745 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 769
70 % 35 68 818
50 % 35 70 834
40 % 35 70 872
30 % 35 70 859
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2790
95 % 35 68 748 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 821
50 % 35 68 875
40 % 35 72 838
30 % 35 72 839
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 593
95 % 35 68 729 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 753
70 % 35 68 802
50 % 35 70 845
40 % 35 70 879
30 % 35 71 853
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 622
95 % 35 68 735 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 760
70 % 35 68 809
50 % 35 68 864
40 % 35 68 892
30 % 35 194 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 529
95 % 35 74 660 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 683
70 % 35 74 730
50 % 35 77 746
40 % 44 453 46
30 % 44 453 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 520
95 % 35 74 650 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 673
70 % 35 74 720
50 % 35 203 198
40 % 35 204 212
30 % 35 204 232
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 565
95 % 33 70 699 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 726
70 % 33 70 771
50 % 33 70 836
40 % 33 70 866
30 % 33 70 861
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 521
95 % 35 74 651 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 674
70 % 35 74 721
50 % 35 74 783
40 % 44 413 54
30 % 44 439 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 599
95 % 35 68 736 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 761
70 % 35 68 810
50 % 35 68 865
40 % 35 70 870
30 % 35 71 852
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 606
95 % 35 68 746 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 770
70 % 35 68 819
50 % 35 68 873
40 % 35 68 899
30 % 35 70 866
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57793
95 % 3 5 14930 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14628
70 % 3 5 13692
50 % 3 5 12122
40 % 3 5 10878
30 % 3 5 9261
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2692
95 % 3 21 3026
90 % 3 21 3075
70 % 3 21 3024
50 % 7 30 2096
40 % 7 146 285
30 % 9 150 294
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 608
95 % 35 68 730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 754
70 % 35 68 803
50 % 35 69 847
40 % 35 69 881
30 % 35 69 869
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57792
95 % 35 68 734 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 759
70 % 35 68 808
50 % 35 189 205
40 % 35 189 227
30 % 35 189 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 590
95 % 35 68 726 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 751
70 % 35 68 799
50 % 35 68 859
40 % 35 184 233
30 % 35 184 252
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 604
95 % 35 68 744 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 767
70 % 35 68 816
50 % 35 68 870
40 % 35 194 223
30 % 45 577 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2712
95 % 35 68 743 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 766
70 % 35 68 815
50 % 35 187 207
40 % 35 187 230
30 % 35 187 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60068
95 % 35 74 656 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 679
70 % 35 74 724
50 % 35 74 787
40 % 35 202 215
30 % 35 202 234
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 848
95 % 35 74 647 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 671
70 % 35 74 716
50 % 35 74 778
40 % 35 76 793
30 % 36 78 772
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 522
95 % 35 74 654 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 678
70 % 35 74 723
50 % 35 74 786
40 % 36 196 220
30 % 36 196 239
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2711
95 % 3 21 3044 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 750
70 % 35 68 798
50 % 51 107 387
40 % 58 128 303
30 % 72 269 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60065
95 % 1 1 49028
90 % 1 7 10929
70 % 3 27 2375
50 % 35 74 780
40 % 35 79 750
30 % 35 79 762
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 519
95 % 35 74 648
90 % 35 74 667
70 % 35 74 713
50 % 35 74 779
40 % 36 78 777
30 % 36 78 773

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
18 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
19 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
20 1N8R 27 1 50S ribosomal protein L37AE 2238
21 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
22 1Q81 28 1 L37Ae 50S ribosomal protein 2238
23 1Q82 28 1 L37Ae 50S ribosomal protein 2238
24 1QVF 28 Y L37Ae 50S ribosomal protein 2238
25 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
26 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
27 1NJI 27 1 50S ribosomal protein L37AE 2238
28 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
29 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
30 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
31 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
35 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
37 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
38 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
39 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
40 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
41 5OBM 44 Q3, q3 60S ribosomal protein L43-A 4932
42 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
43 5ON6 45 AQ, DR 60S ribosomal protein L43-A 4932
44 1Q86 28 1 L37Ae 50S ribosomal protein 2238
45 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
46 5NDV 44 Q3, q3 60S ribosomal protein L43-A 4932
47 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
48 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
49 3G4S 27 Z 50S ribosomal protein L37Ae 2238
50 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
51 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
52 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
53 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
54 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
55 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
56 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
57 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
58 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
59 5NDW 67 Q3, q3 60S ribosomal protein L43-A 4932
60 4V8P 46 BY, CY, EY, GY RPL37A 5911
61 5NDG 79 Q3, q3 60S ribosomal protein L43-A 4932
62 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
63 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
64 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
65 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
66 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
67 6FTG 41 p Ribosomal protein L37a 9986
68 6FTI 41 p Ribosomal protein L37a 9986
69 6FTJ 41 p Ribosomal protein L37a 9986
70 6FT6 41 p 60S ribosomal protein L43-A 4932
71 6FRK 49 p Ribosomal protein eL43 9986
72 6EK0 44 Lp 60S ribosomal protein L37a 9606
73 6AZ3 41 o ribosomal protein eL43 5661
74 5XY3 43 p Uncharacterized protein 5722
75 5XXB 43 o Ribosomal protein eL43 5811
76 5UMD 44 h 60S ribosomal protein L37a 5833
77 5MC6 60 AT 60S ribosomal protein L43-A 4932
78 5H4P 41 p 60S ribosomal protein L43-A 4932
79 5M1J 65 p5 60S ribosomal protein L43-B 4932
80 5LZS 41 p Uncharacterized protein 9986
81 5LZT 41 p eL43 9986
82 5LZU 41 p eL43 9986
83 5LZV 41 p eL43 9986
84 5LZW 41 p eL43 9986
85 5LZX 41 p eL43 9986
86 5LZY 41 p eL43 9986
87 5LZZ 41 p eL43 9986
88 5T62 44 R 60S ribosomal protein L43-A 4932
89 5T6R 43 R 60S ribosomal protein L43-A 4932
90 5T5H 38 o 60S ribosomal protein L37a 5693
91 5T2A 39 m eL43 5661
92 5T2C 28 j 60S ribosomal protein L37a 9606
93 5LKS 44 Lp 60S ribosomal protein L37a 9606
94 5JUO 47 UA eL43 (yeast L43) 4932
95 5JUP 47 UA eL43 (yeast L43) 4932
96 5JUS 47 UA eL43 (yeast L43) 4932
97 5JUT 47 UA eL43 (yeast L43) 4932
98 5JUU 47 UA eL43 (yeast L43) 4932
99 5JCS 28 p 60S ribosomal protein L43-A 4932
100 5IT7 44 pp KLLA0E05941p 28985
101 3JCT 42 p 60S ribosomal protein L43-A 4932
102 3JCS 47 m ribosomal protein L43e 5661
103 5GAK 13 D 60S ribosomal protein L43-A 4932
104 5FL8 40 p 60S ribosomal protein L43-A 4932
105 5APN 43 p 60S ribosomal protein L43-A 4932
106 5APO 43 p 60S ribosomal protein L43-A 4932
107 3JBN 52 Ah 60S ribosomal protein eL43 5833
108 3JBO 55 Ah 60S ribosomal protein eL43 5833
109 3JBP 52 Ah 60S ribosomal protein eL43 5833
110 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
111 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
112 3JAG 41 p eL43 9986
113 3JAH 41 p eL43 9986
114 3JAI 41 p eL43 9986
115 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
116 5AJ0 44 Ap 60S ribosomal protein L37a 9606
117 3J92 40 p eL43 9986
118 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
119 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
120 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
121 3J7O 44 p Ribosomal protein eL43 9823
122 3J7P 45 p Ribosomal protein eL43 9823
123 3J7Q 44 p Ribosomal protein eL43 9823
124 3J7R 44 p Ribosomal protein eL43 9823
125 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
126 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
127 3J79 44 h 60S ribosomal protein eL43 5833
128 3J77 43 93 60S ribosomal protein L43 4932
129 3J78 43 93 60S ribosomal protein L43 4932
130 3J6X 45 83 60S ribosomal protein L43 4932
131 3J6Y 45 83 60S ribosomal protein L43 4932
132 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
133 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
134 4V7F 40 k 60S ribosomal protein L43 4932
135 4V7E 74 Cp 60S ribosomal protein L43E 4565
136 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
137 4V6W 77 Cp 60S ribosomal protein L37a 7227
138 4V6X 77 Cp 60S ribosomal protein L37a 9606
139 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
140 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
141 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
142 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
143 4V7H 24 B9 60S ribosomal protein L43 5541
144 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
145 1YSH 5 D ribosomal protein L37a 4530
146 4V4B 47 B9 60S ribosomal protein L43 4932