Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 788
95 % 36 68 607
90 % 36 68 641
70 % 36 68 682
50 % 36 163 208
40 % 36 163 229
30 % 44 479 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56994
95 % 1 1 39717
90 % 1 1 37825
70 % 36 68 675
50 % 36 159 215
40 % 36 159 237
30 % 36 159 249
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 344
95 % 36 74 508
90 % 36 74 542
70 % 36 74 580
50 % 36 74 654
40 % 36 74 700
30 % 43 468 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 342
95 % 36 74 506
90 % 36 74 538
70 % 36 74 576
50 % 36 76 634
40 % 36 76 678
30 % 36 79 658
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 418
95 % 36 68 609
90 % 36 68 643
70 % 36 68 684
50 % 36 70 707
40 % 36 70 746
30 % 36 70 751
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2086
95 % 36 68 605
90 % 36 68 640
70 % 36 68 681
50 % 36 68 735
40 % 36 72 717
30 % 36 72 721
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 420
95 % 36 68 612
90 % 36 68 645
70 % 36 68 687
50 % 36 70 709
40 % 36 70 748
30 % 36 71 736
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 431
95 % 36 68 603
90 % 36 68 638
70 % 36 68 678
50 % 36 68 732
40 % 36 68 766
30 % 36 162 242
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 351
95 % 36 74 514
90 % 36 74 551
70 % 36 74 589
50 % 36 76 636
40 % 36 78 657
30 % 43 388 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 349
95 % 36 74 512
90 % 36 74 548
70 % 36 74 588
50 % 36 167 203
40 % 36 167 224
30 % 36 167 232
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 397
95 % 34 70 579
90 % 34 70 618
70 % 34 70 655
50 % 34 70 710
40 % 34 70 750
30 % 34 70 754
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 352
95 % 36 74 515
90 % 36 74 552
70 % 36 74 590
50 % 36 74 659
40 % 36 74 703
30 % 36 74 704
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 412
95 % 36 68 604
90 % 36 68 639
70 % 36 68 679
50 % 36 68 733
40 % 36 70 742
30 % 36 71 734
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 422
95 % 36 68 614
90 % 36 68 647
70 % 36 68 689
50 % 36 68 739
40 % 36 68 770
30 % 36 68 774
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60269
95 % 3 5 13470
90 % 3 5 13223
70 % 3 5 12428
50 % 3 5 11108
40 % 3 5 10092
30 % 3 5 8767
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66468
95 % 1 1 46065
90 % 1 1 43839
70 % 3 21 2742
50 % 7 30 1833
40 % 7 116 324
30 % 26 139 282
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 423
95 % 36 68 615
90 % 36 68 648
70 % 36 68 692
50 % 36 69 720
40 % 36 69 759
30 % 36 69 765
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67845
95 % 36 68 616
90 % 36 68 649
70 % 36 68 693
50 % 36 160 213
40 % 36 160 235
30 % 36 160 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 421
95 % 36 68 613
90 % 36 68 646
70 % 36 68 688
50 % 36 68 738
40 % 36 68 769
30 % 36 156 253
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 411
95 % 36 68 602
90 % 36 68 637
70 % 36 68 677
50 % 36 68 731
40 % 36 161 230
30 % 44 473 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2066
95 % 36 68 598
90 % 36 68 635
70 % 36 68 674
50 % 36 158 214
40 % 36 160 233
30 % 36 160 245
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50390
95 % 36 74 502
90 % 36 74 533
70 % 36 74 569
50 % 36 74 647
40 % 36 167 222
30 % 36 167 230
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9502
95 % 36 74 504
90 % 36 74 535
70 % 36 74 575
50 % 36 74 650
40 % 36 76 677
30 % 36 77 676
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 343
95 % 36 74 507
90 % 36 74 540
70 % 36 74 578
50 % 36 74 652
40 % 37 167 223
30 % 37 167 231
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2094
95 % 3 21 2716
90 % 36 68 642
70 % 36 68 683
50 % 51 105 303
40 % 58 119 275
30 % 58 121 281
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59204
95 % 1 1 40953
90 % 1 7 9609
70 % 3 27 2027
50 % 36 74 653
40 % 36 79 645
30 % 36 79 661
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 345
95 % 36 74 509
90 % 36 74 545
70 % 36 74 584
50 % 36 74 657
40 % 37 77 667
30 % 37 78 668

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
19 1N8R 27 1 50S ribosomal protein L37AE 2238
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
26 1NJI 27 1 50S ribosomal protein L37AE 2238
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
37 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
38 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
39 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
40 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
41 1Q86 28 1 L37Ae 50S ribosomal protein 2238
42 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
43 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
44 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
45 3G4S 27 Z 50S ribosomal protein L37Ae 2238
46 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
47 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
48 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
49 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
50 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
51 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
52 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
53 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
54 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
55 5LZS 41 p Uncharacterized protein 9986
56 5LZT 41 p eL43 9986
57 5LZU 41 p eL43 9986
58 5LZV 41 p eL43 9986
59 5LZW 41 p eL43 9986
60 5LZX 41 p eL43 9986
61 5LZY 41 p eL43 9986
62 5LZZ 41 p eL43 9986
63 5T5H 38 o 60S ribosomal protein L37a 5693
64 5JUO 47 UA eL43 (yeast L43) 4932
65 5JUP 47 UA eL43 (yeast L43) 4932
66 5JUS 47 UA eL43 (yeast L43) 4932
67 5JUT 47 UA eL43 (yeast L43) 4932
68 5JUU 47 UA eL43 (yeast L43) 4932
69 5JCS 28 p 60S ribosomal protein L43-A 4932
70 5IT7 44 pp KLLA0E05941p 28985
71 3JCT 42 p 60S ribosomal protein L43-A 4932
72 3JCS 47 m ribosomal protein L43e 5661
73 5GAK 13 D 60S ribosomal protein L43-A 4932
74 5FL8 40 p 60S ribosomal protein L43-A 4932
75 5APN 43 p 60S ribosomal protein L43-A 4932
76 5APO 43 p 60S ribosomal protein L43-A 4932
77 3JBN 52 Ah 60S ribosomal protein eL43 5833
78 3JBO 55 Ah 60S ribosomal protein eL43 5833
79 3JBP 52 Ah 60S ribosomal protein eL43 5833
80 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
81 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
82 3JAG 41 p eL43 9986
83 3JAH 41 p eL43 9986
84 3JAI 41 p eL43 9986
85 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
86 5AJ0 44 Ap 60S ribosomal protein L37a 9606
87 3J92 40 p eL43 9986
88 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
89 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
90 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
91 3J7O 44 p Ribosomal protein eL43 9823
92 3J7P 45 p Ribosomal protein eL43 9823
93 3J7Q 44 p Ribosomal protein eL43 9823
94 3J7R 44 p Ribosomal protein eL43 9823
95 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
96 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
97 3J79 44 h 60S ribosomal protein eL43 5833
98 3J77 43 93 60S ribosomal protein L43 4932
99 3J78 43 93 60S ribosomal protein L43 4932
100 3J6X 45 83 60S ribosomal protein L43 4932
101 3J6Y 45 83 60S ribosomal protein L43 4932
102 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
103 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
104 4V7F 40 k 60S ribosomal protein L43 4932
105 4V7E 74 Cp 60S ribosomal protein L43E 4565
106 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
107 4V6W 77 Cp 60S ribosomal protein L37a 7227
108 4V6X 77 Cp 60S ribosomal protein L37a 9606
109 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
110 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
111 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
112 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
113 4V7H 24 B9 60S ribosomal protein L43 5541
114 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
115 1YSH 5 D ribosomal protein L37a 4530
116 4V4B 47 B9 60S ribosomal protein L43 4932