Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 742
95 % 36 68 527
90 % 36 68 555
70 % 36 68 609
50 % 36 141 223
40 % 36 141 254
30 % 44 428 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54386
95 % 1 1 37981
90 % 1 1 36183
70 % 36 68 603
50 % 36 136 236
40 % 36 136 263
30 % 36 136 275
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 462
90 % 36 74 489
70 % 36 74 534
50 % 36 74 621
40 % 36 74 664
30 % 43 417 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 76 590
40 % 36 76 640
30 % 36 78 615
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 673
40 % 36 70 715
30 % 36 70 717
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1928
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 68 702
40 % 36 70 712
30 % 36 71 699
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 675
40 % 36 70 717
30 % 36 71 702
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 699
40 % 36 68 733
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 76 592
40 % 36 78 613
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 507
90 % 34 70 532
70 % 34 70 583
50 % 34 70 676
40 % 34 70 718
30 % 34 70 719
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 74 627
40 % 36 74 670
30 % 36 74 664
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 711
30 % 36 71 698
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 704
40 % 36 68 736
30 % 36 68 736
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57530
95 % 3 5 12801
90 % 3 5 12559
70 % 3 5 11819
50 % 3 5 10592
40 % 3 5 9666
30 % 3 5 8412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63523
95 % 1 1 44095
90 % 1 1 42013
70 % 3 21 2574
50 % 7 30 1732
40 % 7 94 377
30 % 26 117 327
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 690
40 % 36 69 728
30 % 36 69 731
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64867
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 703
40 % 36 68 735
30 % 36 136 276
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 698
40 % 36 140 256
30 % 44 423 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1904
95 % 36 68 521
90 % 36 68 549
70 % 36 68 602
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48090
95 % 36 74 452
90 % 36 74 480
70 % 36 74 526
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8939
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 616
40 % 36 76 639
30 % 36 77 624
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 461
90 % 36 74 488
70 % 36 74 532
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1939
95 % 3 21 2519
90 % 36 68 557
70 % 36 68 610
50 % 51 96 345
40 % 58 110 307
30 % 58 112 322
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56508
95 % 1 1 39163
90 % 1 7 9098
70 % 3 27 1891
50 % 36 74 620
40 % 36 79 601
30 % 36 79 605
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 463
90 % 36 74 491
70 % 36 74 536
50 % 36 74 624
40 % 37 77 624
30 % 37 78 618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
19 1N8R 27 1 50S ribosomal protein L37AE 2238
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
26 1NJI 27 1 50S ribosomal protein L37AE 2238
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
37 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
38 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
39 1Q86 28 1 L37Ae 50S ribosomal protein 2238
40 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
41 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
42 3G4S 27 Z 50S ribosomal protein L37Ae 2238
43 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
44 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
45 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
46 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
47 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
48 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
49 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
50 5IT7 44 pp KLLA0E05941p 28985
51 5GAK 13 D 60S ribosomal protein L43-A 4932
52 5FL8 40 p 60S ribosomal protein L43-A 4932
53 5APN 43 p 60S ribosomal protein L43-A 4932
54 5APO 43 p 60S ribosomal protein L43-A 4932
55 3JBN 52 Ah 60S ribosomal protein eL43 5833
56 3JBO 55 Ah 60S ribosomal protein eL43 5833
57 3JBP 52 Ah 60S ribosomal protein eL43 5833
58 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
59 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
60 3JAG 41 p eL43 9986
61 3JAH 41 p eL43 9986
62 3JAI 41 p eL43 9986
63 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
64 5AJ0 44 Ap 60S ribosomal protein L37a 9606
65 3J92 40 p eL43 9986
66 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
67 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
68 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
69 3J7O 44 p Ribosomal protein eL43 9823
70 3J7P 45 p Ribosomal protein eL43 9823
71 3J7Q 44 p Ribosomal protein eL43 9823
72 3J7R 44 p Ribosomal protein eL43 9823
73 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
74 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
75 3J79 44 h 60S ribosomal protein eL43 5833
76 3J77 43 93 60S ribosomal protein L43 4932
77 3J78 43 93 60S ribosomal protein L43 4932
78 3J6X 45 83 60S ribosomal protein L43 4932
79 3J6Y 45 83 60S ribosomal protein L43 4932
80 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
81 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
82 4V7F 40 k 60S ribosomal protein L43 4932
83 4V7E 74 Cp 60S ribosomal protein L43E 4565
84 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
85 4V6W 77 Cp 60S ribosomal protein L37a 7227
86 4V6X 77 Cp 60S ribosomal protein L37a 9606
87 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
88 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
89 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
90 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
91 4V7H 24 B9 60S ribosomal protein L43 5541
92 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
93 1YSH 5 D ribosomal protein L37a 4530
94 4V4B 47 B9 60S ribosomal protein L43 4932