Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 868
95 % 35 68 699 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 729
70 % 35 68 783
50 % 35 180 201
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61318
95 % 1 1 42800
90 % 1 1 40671
70 % 35 68 774
50 % 35 176 205
40 % 35 176 229
30 % 35 176 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 620 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 648
70 % 35 74 691
50 % 35 74 743
40 % 35 74 779
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 444
95 % 35 74 618 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 646
70 % 35 74 688
50 % 35 76 718
40 % 35 76 754
30 % 35 79 718
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 515
95 % 35 68 701 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 732
70 % 35 68 786
50 % 35 70 795
40 % 35 70 831
30 % 35 70 818
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2272
95 % 35 68 698 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 728
70 % 35 68 781
50 % 35 68 827
40 % 35 72 806
30 % 35 72 797
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 788
50 % 35 70 796
40 % 35 70 832
30 % 35 71 807
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 525
95 % 35 68 696 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 726
70 % 35 68 778
50 % 35 68 824
40 % 35 68 859
30 % 35 179 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 624 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 652
70 % 35 74 698
50 % 35 76 723
40 % 35 78 735
30 % 42 426 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 623 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 696
50 % 35 183 199
40 % 35 184 218
30 % 35 184 228
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 483
95 % 33 70 670 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 696
70 % 33 70 749
50 % 33 70 797
40 % 33 70 833
30 % 33 70 820
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 625 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 653
70 % 35 74 699
50 % 35 74 748
40 % 42 387 52
30 % 42 413 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 512
95 % 35 68 697 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 727
70 % 35 68 779
50 % 35 68 825
40 % 35 70 829
30 % 35 71 805
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 518
95 % 35 68 705 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 736
70 % 35 68 790
50 % 35 68 832
40 % 35 68 863
30 % 35 68 848
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64785
95 % 3 5 14578 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 5 14307
70 % 3 5 13437
50 % 3 5 11937
40 % 3 5 10828
30 % 3 5 9394
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71262
95 % 1 1 49463
90 % 1 1 46953
70 % 3 21 2971
50 % 7 30 1982
40 % 7 134 287
30 % 26 157 264
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 706 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 737
70 % 35 68 791
50 % 35 69 811
40 % 35 69 845
30 % 35 69 835
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72712
95 % 35 68 707 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 738
70 % 35 68 792
50 % 35 177 203
40 % 35 177 226
30 % 35 177 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 704 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 735
70 % 35 68 789
50 % 35 68 831
40 % 35 68 862
30 % 35 173 245
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 511
95 % 35 68 695 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 724
70 % 35 68 776
50 % 35 68 823
40 % 35 178 222
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2255
95 % 35 68 692 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 721
70 % 35 68 772
50 % 35 175 204
40 % 35 177 225
30 % 35 177 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54363
95 % 35 74 610 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 35 74 640
70 % 35 74 684
50 % 35 74 736
40 % 35 184 216
30 % 35 184 226
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10290
95 % 35 74 614 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 644
70 % 35 74 686
50 % 35 74 738
40 % 35 76 752
30 % 36 78 728
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 619 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 647
70 % 35 74 689
50 % 35 74 741
40 % 36 184 217
30 % 36 184 227
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2284
95 % 3 21 2936 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 731
70 % 35 68 785
50 % 50 105 350
40 % 57 126 282
30 % 57 128 283
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63641
95 % 1 1 44102
90 % 1 7 10407
70 % 3 27 2216
50 % 35 74 742
40 % 35 79 723
30 % 35 79 720
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 448
95 % 35 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 694
50 % 35 74 747
40 % 36 77 746
30 % 36 78 732

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
18 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
19 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
20 1N8R 27 1 50S ribosomal protein L37AE 2238
21 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
22 1Q81 28 1 L37Ae 50S ribosomal protein 2238
23 1Q82 28 1 L37Ae 50S ribosomal protein 2238
24 1QVF 28 Y L37Ae 50S ribosomal protein 2238
25 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
26 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
27 1NJI 27 1 50S ribosomal protein L37AE 2238
28 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
29 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
30 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
31 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
35 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
37 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
38 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
39 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
40 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
41 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
42 1Q86 28 1 L37Ae 50S ribosomal protein 2238
43 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
44 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
45 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
46 3G4S 27 Z 50S ribosomal protein L37Ae 2238
47 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
48 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
49 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
50 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
51 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
52 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
53 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
54 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
55 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
56 4V8P 46 BY, CY, EY, GY RPL37A 5911
57 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
58 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
59 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
60 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
61 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
62 5XY3 43 p Uncharacterized protein 5722
63 5XXB 43 o Ribosomal protein eL43 5811
64 5UMD 44 h 60S ribosomal protein L37a 5833
65 5MC6 60 AT 60S ribosomal protein L43-A 4932
66 5H4P 41 p 60S ribosomal protein L43-A 4932
67 5M1J 65 p5 60S ribosomal protein L43-B 4932
68 5LZS 41 p Uncharacterized protein 9986
69 5LZT 41 p eL43 9986
70 5LZU 41 p eL43 9986
71 5LZV 41 p eL43 9986
72 5LZW 41 p eL43 9986
73 5LZX 41 p eL43 9986
74 5LZY 41 p eL43 9986
75 5LZZ 41 p eL43 9986
76 5T62 44 R 60S ribosomal protein L43-A 4932
77 5T6R 43 R 60S ribosomal protein L43-A 4932
78 5T5H 38 o 60S ribosomal protein L37a 5693
79 5T2A 39 m eL43 5661
80 5T2C 28 j 60S ribosomal protein L37a 9606
81 5LKS 44 Lp 60S ribosomal protein L37a 9606
82 5JUO 47 UA eL43 (yeast L43) 4932
83 5JUP 47 UA eL43 (yeast L43) 4932
84 5JUS 47 UA eL43 (yeast L43) 4932
85 5JUT 47 UA eL43 (yeast L43) 4932
86 5JUU 47 UA eL43 (yeast L43) 4932
87 5JCS 28 p 60S ribosomal protein L43-A 4932
88 5IT7 44 pp KLLA0E05941p 28985
89 3JCT 42 p 60S ribosomal protein L43-A 4932
90 3JCS 47 m ribosomal protein L43e 5661
91 5GAK 13 D 60S ribosomal protein L43-A 4932
92 5FL8 40 p 60S ribosomal protein L43-A 4932
93 5APN 43 p 60S ribosomal protein L43-A 4932
94 5APO 43 p 60S ribosomal protein L43-A 4932
95 3JBN 52 Ah 60S ribosomal protein eL43 5833
96 3JBO 55 Ah 60S ribosomal protein eL43 5833
97 3JBP 52 Ah 60S ribosomal protein eL43 5833
98 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
99 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
100 3JAG 41 p eL43 9986
101 3JAH 41 p eL43 9986
102 3JAI 41 p eL43 9986
103 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
104 5AJ0 44 Ap 60S ribosomal protein L37a 9606
105 3J92 40 p eL43 9986
106 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
107 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
108 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
109 3J7O 44 p Ribosomal protein eL43 9823
110 3J7P 45 p Ribosomal protein eL43 9823
111 3J7Q 44 p Ribosomal protein eL43 9823
112 3J7R 44 p Ribosomal protein eL43 9823
113 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
114 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
115 3J79 44 h 60S ribosomal protein eL43 5833
116 3J77 43 93 60S ribosomal protein L43 4932
117 3J78 43 93 60S ribosomal protein L43 4932
118 3J6X 45 83 60S ribosomal protein L43 4932
119 3J6Y 45 83 60S ribosomal protein L43 4932
120 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
121 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
122 4V7F 40 k 60S ribosomal protein L43 4932
123 4V7E 74 Cp 60S ribosomal protein L43E 4565
124 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
125 4V6W 77 Cp 60S ribosomal protein L37a 7227
126 4V6X 77 Cp 60S ribosomal protein L37a 9606
127 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
128 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
129 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
130 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
131 4V7H 24 B9 60S ribosomal protein L43 5541
132 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
133 1YSH 5 D ribosomal protein L37a 4530
134 4V4B 47 B9 60S ribosomal protein L43 4932