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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 400 Members. Sequence cutoff: 40% Cluster size: 84 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1S72 28 Z 50S ribosomal protein L37Ae 2238  
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238  
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238  
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238  
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238  
6 3G71 27 Z 50S ribosomal protein L37Ae 2238  
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238  
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238  
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 559292  
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238  
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238  
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 559292  
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238  
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238  
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238  
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 559292  
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 559292  
19 1N8R 27 1 50S ribosomal protein L37AE 2238  
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 559292  
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238  
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238  
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238  
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 559292  
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 559292  
26 1NJI 27 1 50S ribosomal protein L37AE 2238  
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 559292  
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 559292  
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 559292  
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 559292  
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 559292  
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 559292  
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
36 4U51 79 Q3, q3 60S ribosomal protein L43-A 559292  
37 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
38 4U53 79 Q3, q3 60S ribosomal protein L43-A 559292  
39 1Q86 28 1 L37Ae 50S ribosomal protein 2238  
40 4U50 79 Q3, q3 60S ribosomal protein L43-A 559292  
41 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238  
42 3G4S 27 Z 50S ribosomal protein L37Ae 2238  
43 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238  
44 4U56 79 Q3, q3 60S ribosomal protein L43-A 559292  
45 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238  
46 4U4O 79 Q3, q3 60S ribosomal protein L43-A 559292  
47 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932  
48 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986  
49 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986  
50 3JAG 41 p eL43 9986  
51 3JAH 41 p eL43 9986  
52 3JAI 41 p eL43 9986  
53 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606  
54 5AJ0 44 Ap 60S ribosomal protein L37a 9606  
55 3J92 40 p eL43 9986  
56 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986  
57 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986  
58 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565  
59 3J7O 44 p Ribosomal protein eL43 9823  
60 3J7P 45 p Ribosomal protein eL43 9823  
61 3J7Q 44 p Ribosomal protein eL43 9823  
62 3J7R 44 p Ribosomal protein eL43 9823  
63 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986  
64 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986  
65 3J79 44 h 60S ribosomal protein eL43 36329  
66 3J77 43 93 60S ribosomal protein L43 4932  
67 3J78 43 93 60S ribosomal protein L43 4932  
68 3J6X 45 83 60S ribosomal protein L43 580240  
69 3J6Y 45 83 60S ribosomal protein L43 580240  
70 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986  
71 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985  
72 4V7F 40 k 60S ribosomal protein L43 4932  
73 4V7E 74 Cp 60S ribosomal protein L43E 4565  
74 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190  
75 4V6W 77 Cp 60S ribosomal protein L37a 7227  
76 4V6X 77 Cp 60S ribosomal protein L37a 9606  
77 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431  
78 4V6U 45 Bi 50S ribosomal protein L37Ae 186497  
79 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 559292  
80 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932  
81 4V7H 24 B9 60S ribosomal protein L43 5541  
82 4V5Z 81 Bz 60S Ribosomal protein L37a 9615  
83 1YSH 5 D ribosomal protein L37a 4530  
84 4V4B 47 B9 60S ribosomal protein L43 4932  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 686
95% 36 68 489
90% 36 68 512
70% 36 68 562
50% 36 128 228
40% 36 128 257
30% 41 366 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50864
95% 1 1 35618
90% 1 1 34004
70% 36 68 555
50% 36 126 236
40% 36 126 264
30% 36 126 279
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 426
90% 36 74 452
70% 36 74 488
50% 36 74 557
40% 36 74 598
30% 40 358 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 423
90% 36 74 450
70% 36 74 485
50% 36 76 534
40% 36 76 576
30% 36 78 553
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 491
90% 36 68 515
70% 36 68 565
50% 36 70 613
40% 36 70 650
30% 36 70 646
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1777
95% 36 68 487
90% 36 68 510
70% 36 68 560
50% 36 68 644
40% 36 70 647
30% 36 71 628
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 492
90% 36 68 516
70% 36 68 566
50% 36 70 615
40% 36 70 652
30% 36 71 630
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 343
95% 36 68 485
90% 36 68 508
70% 36 68 558
50% 36 68 641
40% 36 68 674
30% 36 129 268
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 431
90% 36 74 457
70% 36 74 494
50% 36 76 538
40% 36 78 551
30% 40 310 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 429
90% 36 74 455
70% 36 74 492
50% 36 135 218
40% 36 135 242
30% 36 135 257
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 320
95% 34 70 467
90% 34 70 490
70% 34 70 539
50% 34 70 616
40% 34 70 653
30% 34 70 648
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 301
95% 36 74 432
90% 36 74 458
70% 36 74 495
50% 36 74 564
40% 36 74 603
30% 36 74 598
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 486
90% 36 68 509
70% 36 68 559
50% 36 68 642
40% 36 70 646
30% 36 71 627
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 494
90% 36 68 518
70% 36 68 568
50% 36 68 648
40% 36 68 678
30% 36 68 677
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53905
95% 3 5 11947
90% 3 5 11733
70% 3 5 11070
50% 3 5 9935
40% 3 5 9080
30% 3 5 7930
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59685
95% 1 1 41537
90% 1 1 39665
70% 3 21 2390
50% 7 30 1617
40% 7 84 400
30% 26 107 328
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 336
95% 36 68 496
90% 36 68 520
70% 36 68 570
50% 36 69 633
40% 36 69 669
30% 36 69 666
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60994
95% 36 68 497
90% 36 68 521
70% 36 68 571
50% 36 128 229
40% 36 128 258
30% 36 128 271
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 493
90% 36 68 517
70% 36 68 567
50% 36 68 647
40% 36 68 677
30% 36 127 275
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 484
90% 36 68 507
70% 36 68 557
50% 36 68 640
40% 36 127 261
30% 41 361 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1756
95% 36 68 481
90% 36 68 504
70% 36 68 554
50% 36 126 235
40% 36 128 255
30% 36 128 270
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44924
95% 36 74 416
90% 36 74 443
70% 36 74 481
50% 36 74 550
40% 36 132 248
30% 36 132 262
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8295
95% 36 74 420
90% 36 74 447
70% 36 74 484
50% 36 74 552
40% 36 76 572
30% 36 77 561
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 425
90% 36 74 451
70% 36 74 486
50% 36 74 555
40% 37 134 244
30% 37 134 259
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1788
95% 3 21 2334
90% 36 68 514
70% 36 68 564
50% 51 95 328
40% 58 105 302
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52908
95% 1 1 36757
90% 1 7 8478
70% 3 27 1758
50% 36 74 556
40% 36 79 538
30% 36 79 544
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 427
90% 36 74 453
70% 36 74 491
50% 36 74 560
40% 37 77 562
30% 37 78 556
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.