Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 660
90 % 36 68 689
70 % 36 68 734
50 % 36 175 201
40 % 36 175 223
30 % 44 509 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58832
95 % 1 1 41000
90 % 1 1 39021
70 % 36 68 726
50 % 36 171 207
40 % 36 171 231
30 % 36 171 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 584
90 % 36 74 615
70 % 36 74 645
50 % 36 74 693
40 % 36 74 732
30 % 43 491 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 582
90 % 36 74 613
70 % 36 74 642
50 % 36 76 664
40 % 36 76 707
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 469
95 % 36 68 661
90 % 36 68 691
70 % 36 68 736
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2168
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 471
95 % 36 68 664
90 % 36 68 693
70 % 36 68 739
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 485
95 % 36 68 657
90 % 36 68 685
70 % 36 68 729
50 % 36 68 781
40 % 36 68 816
30 % 36 174 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 588
90 % 36 74 619
70 % 36 74 651
50 % 36 76 669
40 % 36 78 688
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 587
90 % 36 74 618
70 % 36 74 650
50 % 36 179 196
40 % 36 179 216
30 % 36 179 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 448
95 % 34 70 631
90 % 34 70 660
70 % 34 70 709
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 589
90 % 36 74 620
70 % 36 74 652
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 686
70 % 36 68 730
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 741
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62170
95 % 3 5 13912
90 % 3 5 13660
70 % 3 5 12818
50 % 3 5 11446
40 % 3 5 10379
30 % 3 5 9008
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68458
95 % 1 1 47435
90 % 1 1 45092
70 % 3 21 2846
50 % 7 30 1900
40 % 7 128 299
30 % 26 151 269
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 475
95 % 36 68 669
90 % 36 68 698
70 % 36 68 745
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69860
95 % 36 68 670
90 % 36 68 699
70 % 36 68 746
50 % 36 172 204
40 % 36 172 228
30 % 36 172 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 740
50 % 36 68 786
40 % 36 68 819
30 % 36 168 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 656
90 % 36 68 684
70 % 36 68 728
50 % 36 68 780
40 % 36 173 224
30 % 44 500 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 170 206
40 % 36 172 227
30 % 36 172 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52086
95 % 36 74 573
90 % 36 74 605
70 % 36 74 638
50 % 36 74 687
40 % 36 179 214
30 % 36 179 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9805
95 % 36 74 578
90 % 36 74 611
70 % 36 74 641
50 % 36 74 689
40 % 36 76 705
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 583
90 % 36 74 614
70 % 36 74 643
50 % 36 74 691
40 % 37 179 215
30 % 37 179 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2179
95 % 3 21 2814
90 % 36 68 690
70 % 36 68 735
50 % 51 105 321
40 % 58 122 277
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61078
95 % 1 1 42249
90 % 1 7 9900
70 % 3 27 2114
50 % 36 74 692
40 % 36 79 676
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 585
90 % 36 74 616
70 % 36 74 648
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
19 1N8R 27 1 50S ribosomal protein L37AE 2238
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
26 1NJI 27 1 50S ribosomal protein L37AE 2238
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
37 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
38 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
39 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
40 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
41 1Q86 28 1 L37Ae 50S ribosomal protein 2238
42 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
43 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
44 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
45 3G4S 27 Z 50S ribosomal protein L37Ae 2238
46 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
47 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
48 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
49 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
50 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
51 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
52 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
53 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
54 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
55 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
56 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
57 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
58 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
59 5UMD 44 h 60S ribosomal protein L37a 5833
60 5MC6 60 AT 60S ribosomal protein L43-A 4932
61 5H4P 41 p 60S ribosomal protein L43-A 4932
62 5M1J 65 p5 60S ribosomal protein L43-B 4932
63 5LZS 41 p Uncharacterized protein 9986
64 5LZT 41 p eL43 9986
65 5LZU 41 p eL43 9986
66 5LZV 41 p eL43 9986
67 5LZW 41 p eL43 9986
68 5LZX 41 p eL43 9986
69 5LZY 41 p eL43 9986
70 5LZZ 41 p eL43 9986
71 5T62 44 R 60S ribosomal protein L43-A 4932
72 5T6R 43 R 60S ribosomal protein L43-A 4932
73 5T5H 38 o 60S ribosomal protein L37a 5693
74 5T2A 39 m eL43 5661
75 5T2C 28 j 60S ribosomal protein L37a 9606
76 5JUO 47 UA eL43 (yeast L43) 4932
77 5JUP 47 UA eL43 (yeast L43) 4932
78 5JUS 47 UA eL43 (yeast L43) 4932
79 5JUT 47 UA eL43 (yeast L43) 4932
80 5JUU 47 UA eL43 (yeast L43) 4932
81 5JCS 28 p 60S ribosomal protein L43-A 4932
82 5IT7 44 pp KLLA0E05941p 28985
83 3JCT 42 p 60S ribosomal protein L43-A 4932
84 3JCS 47 m ribosomal protein L43e 5661
85 5GAK 13 D 60S ribosomal protein L43-A 4932
86 5FL8 40 p 60S ribosomal protein L43-A 4932
87 5APN 43 p 60S ribosomal protein L43-A 4932
88 5APO 43 p 60S ribosomal protein L43-A 4932
89 3JBN 52 Ah 60S ribosomal protein eL43 5833
90 3JBO 55 Ah 60S ribosomal protein eL43 5833
91 3JBP 52 Ah 60S ribosomal protein eL43 5833
92 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
93 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
94 3JAG 41 p eL43 9986
95 3JAH 41 p eL43 9986
96 3JAI 41 p eL43 9986
97 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
98 5AJ0 44 Ap 60S ribosomal protein L37a 9606
99 3J92 40 p eL43 9986
100 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
101 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
102 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
103 3J7O 44 p Ribosomal protein eL43 9823
104 3J7P 45 p Ribosomal protein eL43 9823
105 3J7Q 44 p Ribosomal protein eL43 9823
106 3J7R 44 p Ribosomal protein eL43 9823
107 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
108 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
109 3J79 44 h 60S ribosomal protein eL43 5833
110 3J77 43 93 60S ribosomal protein L43 4932
111 3J78 43 93 60S ribosomal protein L43 4932
112 3J6X 45 83 60S ribosomal protein L43 4932
113 3J6Y 45 83 60S ribosomal protein L43 4932
114 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
115 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
116 4V7F 40 k 60S ribosomal protein L43 4932
117 4V7E 74 Cp 60S ribosomal protein L43E 4565
118 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
119 4V6W 77 Cp 60S ribosomal protein L37a 7227
120 4V6X 77 Cp 60S ribosomal protein L37a 9606
121 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
122 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
123 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
124 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
125 4V7H 24 B9 60S ribosomal protein L43 5541
126 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
127 1YSH 5 D ribosomal protein L37a 4530
128 4V4B 47 B9 60S ribosomal protein L43 4932