Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 856
95 % 35 68 690 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 719
70 % 35 68 772
50 % 35 178 202
40 % 43 534 20
30 % 43 534 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60591
95 % 1 1 42268
90 % 1 1 40182
70 % 35 68 763
50 % 35 174 207
40 % 35 174 230
30 % 35 174 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 618 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 646
70 % 35 74 685
50 % 35 74 736
40 % 35 74 768
30 % 42 514 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 444
95 % 35 74 616
90 % 35 74 644
70 % 35 74 682
50 % 35 76 706
40 % 35 76 741
30 % 35 79 697
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 504
95 % 35 68 691 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 721
70 % 35 68 774
50 % 35 70 791
40 % 35 70 826
30 % 35 70 815
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2248
95 % 35 68 689 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 717
70 % 35 68 770
50 % 35 68 819
40 % 35 72 798
30 % 35 72 790
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 505
95 % 35 68 693 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 723
70 % 35 68 776
50 % 35 70 792
40 % 35 70 827
30 % 35 71 801
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 515
95 % 35 68 687 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 715
70 % 35 68 767
50 % 35 68 816
40 % 35 68 852
30 % 35 177 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 622 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 76 711
40 % 35 78 717
30 % 42 419 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 690
50 % 35 182 198
40 % 35 182 217
30 % 35 182 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 478
95 % 33 70 666 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 690
70 % 33 70 743
50 % 33 70 793
40 % 33 70 828
30 % 33 70 817
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 623 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 651
70 % 35 74 694
50 % 35 74 743
40 % 42 383 58
30 % 42 409 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 501
95 % 35 68 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 716
70 % 35 68 768
50 % 35 68 817
40 % 35 70 823
30 % 35 71 800
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 507
95 % 35 68 695 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 725
70 % 35 68 778
50 % 35 68 823
40 % 35 68 856
30 % 35 68 842
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63972
95 % 3 5 14391 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 5 14115
70 % 3 5 13242
50 % 3 5 11773
40 % 3 5 10679
30 % 3 5 9262
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70314
95 % 1 1 48740
90 % 1 1 46284
70 % 3 21 2938
50 % 7 30 1965
40 % 7 131 300
30 % 26 154 266
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 508
95 % 35 68 696 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 779
50 % 35 69 804
40 % 35 69 840
30 % 35 69 831
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71735
95 % 35 68 697 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 727
70 % 35 68 780
50 % 35 175 203
40 % 35 175 226
30 % 35 175 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 506
95 % 35 68 694 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 777
50 % 35 68 822
40 % 35 68 855
30 % 35 171 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 500
95 % 35 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 713
70 % 35 68 765
50 % 35 68 815
40 % 35 176 223
30 % 43 525 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2231
95 % 35 68 684 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 711
70 % 35 68 762
50 % 35 173 206
40 % 35 175 225
30 % 35 175 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53734
95 % 35 74 608 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 638
70 % 35 74 678
50 % 35 74 729
40 % 35 182 215
30 % 35 182 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10176
95 % 35 74 612 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 642
70 % 35 74 680
50 % 35 74 731
40 % 35 76 739
30 % 36 78 706
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 645
70 % 35 74 683
50 % 35 74 734
40 % 36 182 216
30 % 36 182 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2260
95 % 3 21 2902 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 720
70 % 35 68 773
50 % 50 105 345
40 % 57 124 284
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62869
95 % 1 1 43533
90 % 1 7 10271
70 % 3 27 2202
50 % 35 74 735
40 % 35 79 705
30 % 35 79 699
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 619 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 647
70 % 35 74 688
50 % 35 74 740
40 % 36 77 733
30 % 36 78 712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
18 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
19 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
20 1N8R 27 1 50S ribosomal protein L37AE 2238
21 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
22 1Q81 28 1 L37Ae 50S ribosomal protein 2238
23 1Q82 28 1 L37Ae 50S ribosomal protein 2238
24 1QVF 28 Y L37Ae 50S ribosomal protein 2238
25 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
26 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
27 1NJI 27 1 50S ribosomal protein L37AE 2238
28 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
29 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
30 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
31 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
35 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
37 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
38 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
39 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
40 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
41 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
42 1Q86 28 1 L37Ae 50S ribosomal protein 2238
43 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
44 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
45 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
46 3G4S 27 Z 50S ribosomal protein L37Ae 2238
47 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
48 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
49 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
50 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
51 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
52 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
53 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
54 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
55 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
56 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
57 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
58 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
59 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
60 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
61 5UMD 44 h 60S ribosomal protein L37a 5833
62 5MC6 60 AT 60S ribosomal protein L43-A 4932
63 5H4P 41 p 60S ribosomal protein L43-A 4932
64 5M1J 65 p5 60S ribosomal protein L43-B 4932
65 5LZS 41 p Uncharacterized protein 9986
66 5LZT 41 p eL43 9986
67 5LZU 41 p eL43 9986
68 5LZV 41 p eL43 9986
69 5LZW 41 p eL43 9986
70 5LZX 41 p eL43 9986
71 5LZY 41 p eL43 9986
72 5LZZ 41 p eL43 9986
73 5T62 44 R 60S ribosomal protein L43-A 4932
74 5T6R 43 R 60S ribosomal protein L43-A 4932
75 5T5H 38 o 60S ribosomal protein L37a 5693
76 5T2A 39 m eL43 5661
77 5T2C 28 j 60S ribosomal protein L37a 9606
78 5LKS 44 Lp 60S ribosomal protein L37a 9606
79 5JUO 47 UA eL43 (yeast L43) 4932
80 5JUP 47 UA eL43 (yeast L43) 4932
81 5JUS 47 UA eL43 (yeast L43) 4932
82 5JUT 47 UA eL43 (yeast L43) 4932
83 5JUU 47 UA eL43 (yeast L43) 4932
84 5JCS 28 p 60S ribosomal protein L43-A 4932
85 5IT7 44 pp KLLA0E05941p 28985
86 3JCT 42 p 60S ribosomal protein L43-A 4932
87 3JCS 47 m ribosomal protein L43e 5661
88 5GAK 13 D 60S ribosomal protein L43-A 4932
89 5FL8 40 p 60S ribosomal protein L43-A 4932
90 5APN 43 p 60S ribosomal protein L43-A 4932
91 5APO 43 p 60S ribosomal protein L43-A 4932
92 3JBN 52 Ah 60S ribosomal protein eL43 5833
93 3JBO 55 Ah 60S ribosomal protein eL43 5833
94 3JBP 52 Ah 60S ribosomal protein eL43 5833
95 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
96 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
97 3JAG 41 p eL43 9986
98 3JAH 41 p eL43 9986
99 3JAI 41 p eL43 9986
100 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
101 5AJ0 44 Ap 60S ribosomal protein L37a 9606
102 3J92 40 p eL43 9986
103 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
104 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
105 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
106 3J7O 44 p Ribosomal protein eL43 9823
107 3J7P 45 p Ribosomal protein eL43 9823
108 3J7Q 44 p Ribosomal protein eL43 9823
109 3J7R 44 p Ribosomal protein eL43 9823
110 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
111 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
112 3J79 44 h 60S ribosomal protein eL43 5833
113 3J77 43 93 60S ribosomal protein L43 4932
114 3J78 43 93 60S ribosomal protein L43 4932
115 3J6X 45 83 60S ribosomal protein L43 4932
116 3J6Y 45 83 60S ribosomal protein L43 4932
117 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
118 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
119 4V7F 40 k 60S ribosomal protein L43 4932
120 4V7E 74 Cp 60S ribosomal protein L43E 4565
121 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
122 4V6W 77 Cp 60S ribosomal protein L37a 7227
123 4V6X 77 Cp 60S ribosomal protein L37a 9606
124 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
125 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
126 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
127 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
128 4V7H 24 B9 60S ribosomal protein L43 5541
129 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
130 1YSH 5 D ribosomal protein L37a 4530
131 4V4B 47 B9 60S ribosomal protein L43 4932