Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1S72 28 Z 50S ribosomal protein L37Ae 2238
2 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
3 3G6E 27 Z 50S ribosomal protein L37Ae 2238
4 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
5 2OTL 27 Z 50S ribosomal protein L37Ae 2238
6 3G71 27 Z 50S ribosomal protein L37Ae 2238
7 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
8 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
9 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
10 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
11 3OW2 27 Y 50S ribosomal protein L37Ae 2238
12 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
13 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
14 1QVG 28 Y L37Ae 50S ribosomal protein 2238
15 2QEX 27 Z 50S ribosomal protein L37Ae 2238
16 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
17 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
18 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
19 1N8R 27 1 50S ribosomal protein L37AE 2238
20 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
21 1Q81 28 1 L37Ae 50S ribosomal protein 2238
22 1Q82 28 1 L37Ae 50S ribosomal protein 2238
23 1QVF 28 Y L37Ae 50S ribosomal protein 2238
24 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
25 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
26 1NJI 27 1 50S ribosomal protein L37AE 2238
27 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
30 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
32 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
33 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
34 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
35 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
36 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
37 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
38 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
39 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
40 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
41 1Q86 28 1 L37Ae 50S ribosomal protein 2238
42 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
43 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
44 3G4S 27 Z 50S ribosomal protein L37Ae 2238
45 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
46 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
47 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
48 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
49 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
50 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
51 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
52 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
53 5IT7 44 pp KLLA0E05941p 28985
54 3JCT 42 p 60S ribosomal protein L43-A 4932
55 3JCS 47 m ribosomal protein L43e 5661
56 5GAK 13 D 60S ribosomal protein L43-A 4932
57 5FL8 40 p 60S ribosomal protein L43-A 4932
58 5APN 43 p 60S ribosomal protein L43-A 4932
59 5APO 43 p 60S ribosomal protein L43-A 4932
60 3JBN 52 Ah 60S ribosomal protein eL43 5833
61 3JBO 55 Ah 60S ribosomal protein eL43 5833
62 3JBP 52 Ah 60S ribosomal protein eL43 5833
63 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
64 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
65 3JAG 41 p eL43 9986
66 3JAH 41 p eL43 9986
67 3JAI 41 p eL43 9986
68 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
69 5AJ0 44 Ap 60S ribosomal protein L37a 9606
70 3J92 40 p eL43 9986
71 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
72 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
73 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
74 3J7O 44 p Ribosomal protein eL43 9823
75 3J7P 45 p Ribosomal protein eL43 9823
76 3J7Q 44 p Ribosomal protein eL43 9823
77 3J7R 44 p Ribosomal protein eL43 9823
78 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
79 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
80 3J79 44 h 60S ribosomal protein eL43 5833
81 3J77 43 93 60S ribosomal protein L43 4932
82 3J78 43 93 60S ribosomal protein L43 4932
83 3J6X 45 83 60S ribosomal protein L43 4932
84 3J6Y 45 83 60S ribosomal protein L43 4932
85 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
86 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
87 4V7F 40 k 60S ribosomal protein L43 4932
88 4V7E 74 Cp 60S ribosomal protein L43E 4565
89 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
90 4V6W 77 Cp 60S ribosomal protein L37a 7227
91 4V6X 77 Cp 60S ribosomal protein L37a 9606
92 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
93 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
94 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
95 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
96 4V7H 24 B9 60S ribosomal protein L43 5541
97 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
98 1YSH 5 D ribosomal protein L37a 4530
99 4V4B 47 B9 60S ribosomal protein L43 4932