Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 617
95 % 35 68 759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 786
70 % 35 68 838
50 % 35 202 205
40 % 45 614 23
30 % 45 614 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48958
95 % 1 1 40556
90 % 1 1 38614
70 % 35 68 839
50 % 35 201 207
40 % 35 201 224
30 % 35 201 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 545
95 % 35 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 709
70 % 35 74 754
50 % 35 74 810
40 % 35 199 227
30 % 35 199 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 538
95 % 35 74 675 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 699
70 % 35 74 745
50 % 35 76 783
40 % 35 76 816
30 % 35 79 780
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 632
95 % 35 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 805
70 % 35 68 858
50 % 35 70 862
40 % 35 70 892
30 % 35 70 880
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2892
95 % 35 68 780 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 807
70 % 35 68 859
50 % 35 68 907
40 % 35 72 858
30 % 35 72 863
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 618
95 % 35 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 787
70 % 35 68 840
50 % 35 70 871
40 % 35 70 901
30 % 35 71 874
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 644
95 % 35 68 769 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 796
70 % 35 68 848
50 % 35 68 896
40 % 35 68 920
30 % 35 199 245
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 549
95 % 35 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 712
70 % 35 74 759
50 % 35 77 769
40 % 44 475 45
30 % 44 475 64
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 703
70 % 35 74 749
50 % 35 208 198
40 % 35 209 216
30 % 35 209 234
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 590
95 % 33 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 760
70 % 33 70 805
50 % 33 70 863
40 % 33 70 886
30 % 33 70 882
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 543
95 % 35 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 704
70 % 35 74 750
50 % 35 74 805
40 % 44 435 52
30 % 44 461 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 626
95 % 35 68 770 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 797
70 % 35 68 849
50 % 35 68 897
40 % 35 70 891
30 % 35 71 873
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 625
95 % 35 68 767 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 794
70 % 35 68 846
50 % 35 68 893
40 % 35 68 918
30 % 35 70 884
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59293
95 % 3 5 15414 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15087
70 % 3 5 14100
50 % 3 5 12471
40 % 3 5 11173
30 % 3 5 9507
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2795
95 % 3 21 3127 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3176
70 % 3 21 3124
50 % 7 30 2140
40 % 7 151 289
30 % 9 155 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 633
95 % 35 68 761 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 788
70 % 35 68 841
50 % 35 69 873
40 % 35 69 904
30 % 35 69 891
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59292
95 % 35 68 772 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 799
70 % 35 68 852
50 % 35 194 210
40 % 35 194 232
30 % 35 194 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 615
95 % 35 68 757 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 784
70 % 35 68 836
50 % 35 68 889
40 % 35 189 240
30 % 35 189 254
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 630
95 % 35 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 802
70 % 35 68 834
50 % 35 68 902
40 % 35 199 228
30 % 45 603 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2251
95 % 35 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 803
70 % 35 68 856
50 % 35 192 213
40 % 35 192 234
30 % 35 192 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61659
95 % 35 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 708
70 % 35 74 753
50 % 35 74 809
40 % 35 207 217
30 % 35 207 235
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 880
95 % 35 74 674 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 698
70 % 35 74 744
50 % 35 74 800
40 % 35 76 815
30 % 36 78 793
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 544
95 % 35 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 707
70 % 35 74 752
50 % 35 74 808
40 % 36 201 223
30 % 36 201 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2812
95 % 3 21 3142 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 783
70 % 35 68 835
50 % 51 107 400
40 % 58 130 314
30 % 72 276 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61656
95 % 1 1 50243
90 % 1 7 11399
70 % 3 27 2445
50 % 35 74 803
40 % 35 79 774
30 % 35 79 786
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 695
70 % 35 74 740
50 % 35 74 802
40 % 36 78 797
30 % 36 78 795

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 28 Z 50S ribosomal protein L37Ae 2238
2 1S72 28 Z 50S ribosomal protein L37Ae 2238
3 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
4 3G6E 27 Z 50S ribosomal protein L37Ae 2238
5 3CPW 27 Y 50S ribosomal protein L37Ae 2238
6 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
7 2OTL 27 Z 50S ribosomal protein L37Ae 2238
8 3G71 27 Z 50S ribosomal protein L37Ae 2238
9 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
10 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
11 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
12 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
13 3OW2 27 Y 50S ribosomal protein L37Ae 2238
14 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
15 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
16 1QVG 28 Y L37Ae 50S ribosomal protein 2238
17 2QEX 27 Z 50S ribosomal protein L37Ae 2238
18 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
19 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
20 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
21 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
22 1N8R 27 1 50S ribosomal protein L37AE 2238
23 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
24 1Q81 28 1 L37Ae 50S ribosomal protein 2238
25 1Q82 28 1 L37Ae 50S ribosomal protein 2238
26 1QVF 28 Y L37Ae 50S ribosomal protein 2238
27 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1NJI 27 1 50S ribosomal protein L37AE 2238
30 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
32 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
33 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
35 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
36 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
37 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
38 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
39 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
40 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
41 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
42 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
43 5OBM 44 Q3, q3 60S ribosomal protein L43-A 4932
44 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
45 5ON6 45 AQ, DR 60S ribosomal protein L43-A 4932
46 1Q86 28 1 L37Ae 50S ribosomal protein 2238
47 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
48 5NDV 44 Q3, q3 60S ribosomal protein L43-A 4932
49 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
50 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
51 3G4S 27 Z 50S ribosomal protein L37Ae 2238
52 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
53 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
54 2QA4 28 Z 50S ribosomal protein L37Ae 2238
55 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
56 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
57 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
58 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
59 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
60 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
61 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
62 5NDW 67 Q3, q3 60S ribosomal protein L43-A 4932
63 4V8P 46 BY, CY, EY, GY RPL37A 5911
64 5NDG 79 Q3, q3 60S ribosomal protein L43-A 4932
65 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
66 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
67 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
68 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
69 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
70 6GQV 46 p 60S ribosomal protein L43-A 4932
71 6GQ1 46 p 60S ribosomal protein L43-A 4932
72 6GQB 46 p 60S ribosomal protein L43-A 4932
73 6D9J 41 p eL43 9986
74 6D90 41 p eL43 9986
75 6FTG 41 p Ribosomal protein L37a 9986
76 6FTI 41 p Ribosomal protein L37a 9986
77 6FTJ 41 p Ribosomal protein L37a 9986
78 6FT6 41 p 60S ribosomal protein L43-A 4932
79 6FRK 49 p Ribosomal protein eL43 9986
80 6EK0 44 Lp 60S ribosomal protein L37a 9606
81 6AZ3 41 o ribosomal protein eL43 5661
82 5XY3 43 p Uncharacterized protein 5722
83 5XXB 43 o Ribosomal protein eL43 5811
84 5UMD 44 h 60S ribosomal protein L37a 5833
85 5MC6 60 AT 60S ribosomal protein L43-A 4932
86 5H4P 41 p 60S ribosomal protein L43-A 4932
87 5M1J 65 p5 60S ribosomal protein L43-B 4932
88 5LZS 41 p Uncharacterized protein 9986
89 5LZT 41 p eL43 9986
90 5LZU 41 p eL43 9986
91 5LZV 41 p eL43 9986
92 5LZW 41 p eL43 9986
93 5LZX 41 p eL43 9986
94 5LZY 41 p eL43 9986
95 5LZZ 41 p eL43 9986
96 5T62 44 R 60S ribosomal protein L43-A 4932
97 5T6R 43 R 60S ribosomal protein L43-A 4932
98 5T5H 38 o 60S ribosomal protein L37a 5693
99 5T2A 39 m eL43 5661
100 5T2C 28 j 60S ribosomal protein L37a 9606
101 5LKS 44 Lp 60S ribosomal protein L37a 9606
102 5JUO 47 UA eL43 (yeast L43) 4932
103 5JUP 47 UA eL43 (yeast L43) 4932
104 5JUS 47 UA eL43 (yeast L43) 4932
105 5JUT 47 UA eL43 (yeast L43) 4932
106 5JUU 47 UA eL43 (yeast L43) 4932
107 5JCS 28 p 60S ribosomal protein L43-A 4932
108 5IT7 44 pp KLLA0E05941p 28985
109 3JCT 42 p 60S ribosomal protein L43-A 4932
110 3JCS 47 m ribosomal protein L43e 5661
111 5GAK 13 D 60S ribosomal protein L43-A 4932
112 5FL8 40 p 60S ribosomal protein L43-A 4932
113 5APN 43 p 60S ribosomal protein L43-A 4932
114 5APO 43 p 60S ribosomal protein L43-A 4932
115 3JBN 52 Ah 60S ribosomal protein eL43 5833
116 3JBO 55 Ah 60S ribosomal protein eL43 5833
117 3JBP 52 Ah 60S ribosomal protein eL43 5833
118 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
119 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
120 3JAG 41 p eL43 9986
121 3JAH 41 p eL43 9986
122 3JAI 41 p eL43 9986
123 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
124 5AJ0 44 Ap 60S ribosomal protein L37a 9606
125 3J92 40 p eL43 9986
126 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
127 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
128 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
129 3J7O 44 p Ribosomal protein eL43 9823
130 3J7P 45 p Ribosomal protein eL43 9823
131 3J7Q 44 p Ribosomal protein eL43 9823
132 3J7R 44 p Ribosomal protein eL43 9823
133 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
134 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
135 3J79 44 h 60S ribosomal protein eL43 5833
136 3J77 43 93 60S ribosomal protein L43 4932
137 3J78 43 93 60S ribosomal protein L43 4932
138 3J6X 45 83 60S ribosomal protein L43 4932
139 3J6Y 45 83 60S ribosomal protein L43 4932
140 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
141 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
142 4V7F 40 k 60S ribosomal protein L43 4932
143 4V7E 74 Cp 60S ribosomal protein L43E 4565
144 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
145 4V6W 77 Cp 60S ribosomal protein L37a 7227
146 4V6X 77 Cp 60S ribosomal protein L37a 9606
147 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
148 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
149 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
150 4ADX 36 Z RPL37AE 145262
151 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
152 4V7H 24 B9 60S ribosomal protein L43 5541
153 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
154 1YSH 5 D ribosomal protein L37a 4530
155 4V4B 47 B9 60S ribosomal protein L43 4932