Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 869
95 % 35 68 701 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 731
70 % 35 68 784
50 % 35 180 201
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61399
95 % 1 1 42847
90 % 1 1 40717
70 % 35 68 776
50 % 35 176 205
40 % 35 176 230
30 % 35 176 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 621 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 74 744
40 % 35 74 780
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 619 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 648
70 % 35 74 690
50 % 35 76 719
40 % 35 76 755
30 % 35 79 719
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 703 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 787
50 % 35 70 797
40 % 35 70 833
30 % 35 70 820
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2279
95 % 35 68 700 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 730
70 % 35 68 783
50 % 35 68 829
40 % 35 72 808
30 % 35 72 799
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 517
95 % 35 68 705 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 789
50 % 35 70 798
40 % 35 70 834
30 % 35 71 809
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 526
95 % 35 68 698 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 35 68 728
70 % 35 68 780
50 % 35 68 826
40 % 35 68 861
30 % 35 179 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 452
95 % 35 74 625 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 654
70 % 35 74 700
50 % 35 76 724
40 % 35 78 736
30 % 42 426 59
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 624 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 653
70 % 35 74 698
50 % 35 183 199
40 % 35 184 218
30 % 35 184 228
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 485
95 % 33 70 674 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 700
70 % 33 70 753
50 % 33 70 799
40 % 33 70 835
30 % 33 70 822
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 453
95 % 35 74 626 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 655
70 % 35 74 701
50 % 35 74 749
40 % 42 387 52
30 % 42 413 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 513
95 % 35 68 699 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 729
70 % 35 68 781
50 % 35 68 827
40 % 35 70 831
30 % 35 71 807
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 707 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 738
70 % 35 68 791
50 % 35 68 834
40 % 35 68 865
30 % 35 68 849
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64866
95 % 3 5 14601 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14329
70 % 3 5 13461
50 % 3 5 11956
40 % 3 5 10846
30 % 3 5 9412
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71346
95 % 1 1 49513
90 % 1 1 47002
70 % 3 21 2978
50 % 7 30 1986
40 % 7 134 287
30 % 26 157 264
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 739
70 % 35 68 792
50 % 35 69 813
40 % 35 69 847
30 % 35 69 837
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 72797
95 % 35 68 709 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 740
70 % 35 68 793
50 % 35 177 203
40 % 35 177 226
30 % 35 177 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 518
95 % 35 68 706 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 737
70 % 35 68 790
50 % 35 68 833
40 % 35 68 864
30 % 35 173 245
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 512
95 % 35 68 697 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 778
50 % 35 68 825
40 % 35 178 222
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2262
95 % 35 68 695 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 775
50 % 35 175 204
40 % 35 177 225
30 % 35 177 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54443
95 % 35 74 611 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.3
PDBFlex
90 % 35 74 642
70 % 35 74 686
50 % 35 74 737
40 % 35 184 216
30 % 35 184 226
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10302
95 % 35 74 615 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 646
70 % 35 74 688
50 % 35 74 739
40 % 35 76 753
30 % 36 78 729
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 620 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 649
70 % 35 74 691
50 % 35 74 742
40 % 36 184 217
30 % 36 184 227
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2291
95 % 3 21 2944 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 733
70 % 35 68 786
50 % 50 105 350
40 % 57 126 282
30 % 57 128 284
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63722
95 % 1 1 44150
90 % 1 7 10419
70 % 3 27 2219
50 % 35 74 743
40 % 35 79 724
30 % 35 79 721
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 622 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 696
50 % 35 74 748
40 % 36 77 747
30 % 36 78 733

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 28 Z 50S ribosomal protein L37Ae 2238
2 1VQO 28 Z 50S ribosomal protein L37Ae 2238
3 1VQ8 28 Z 50S ribosomal protein L37Ae 2238
4 1S72 28 Z 50S ribosomal protein L37Ae 2238
5 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
6 1YHQ 28 Z 50S ribosomal protein L37Ae 2238
7 1VQP 28 Z 50S ribosomal protein L37Ae 2238
8 1VQM 28 Z 50S ribosomal protein L37Ae 2238
9 1VQL 28 Z 50S ribosomal protein L37Ae 2238
10 1VQK 28 Z 50S ribosomal protein L37Ae 2238
11 1VQN 29 Z 50S ribosomal protein L37Ae 2238
12 1YIJ 28 Z 50S ribosomal protein L37Ae 2238
13 1YI2 28 Z 50S ribosomal protein L37Ae 2238
14 1VQ9 28 Z 50S ribosomal protein L37Ae 2238
15 1VQ7 28 Z 50S ribosomal protein L37Ae 2238
16 1VQ5 28 Z 50S ribosomal protein L37Ae 2238
17 1YIT 32 Z 50S RIBOSOMAL PROTEIN L37AE 2238
18 3G6E 27 Z 50S ribosomal protein L37Ae 2238
19 3CPW 27 Y 50S ribosomal protein L37Ae 2238
20 1VQ6 29 Z 50S ribosomal protein L37Ae 2238
21 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
22 1YJW 32 Z 50S RIBOSOMAL PROTEIN L37AE 2238
23 1YJ9 28 Z 50S ribosomal protein L37Ae 2238
24 2OTL 27 Z 50S ribosomal protein L37Ae 2238
25 3G71 27 Z 50S ribosomal protein L37Ae 2238
26 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
27 1VQ4 28 Z 50S ribosomal protein L37Ae 2238
28 1YJN 28 Z 50S ribosomal protein L37Ae 2238
29 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
30 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
31 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
32 3OW2 27 Y 50S ribosomal protein L37Ae 2238
33 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
34 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
35 1QVG 28 Y L37Ae 50S ribosomal protein 2238
36 2QEX 27 Z 50S ribosomal protein L37Ae 2238
37 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
38 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
39 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
40 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
41 1N8R 27 1 50S ribosomal protein L37AE 2238
42 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
43 1Q81 28 1 L37Ae 50S ribosomal protein 2238
44 1Q82 28 1 L37Ae 50S ribosomal protein 2238
45 1QVF 28 Y L37Ae 50S ribosomal protein 2238
46 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
47 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
48 1NJI 27 1 50S ribosomal protein L37AE 2238
49 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
50 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
51 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
52 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
53 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
54 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
55 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
56 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
57 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
58 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
59 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
60 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
61 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
62 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
63 1Q86 28 1 L37Ae 50S ribosomal protein 2238
64 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
65 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
66 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
67 3G4S 27 Z 50S ribosomal protein L37Ae 2238
68 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
69 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
70 2QA4 28 Z 50S ribosomal protein L37Ae 2238
71 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
72 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
73 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
74 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
75 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
76 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
77 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
78 4V8P 46 BY, CY, EY, GY RPL37A 5911
79 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
80 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
81 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
82 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
83 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
84 5XY3 43 p Uncharacterized protein 5722
85 5XXB 43 o Ribosomal protein eL43 5811
86 5UMD 44 h 60S ribosomal protein L37a 5833
87 5MC6 60 AT 60S ribosomal protein L43-A 4932
88 5H4P 41 p 60S ribosomal protein L43-A 4932
89 5M1J 65 p5 60S ribosomal protein L43-B 4932
90 5LZS 41 p Uncharacterized protein 9986
91 5LZT 41 p eL43 9986
92 5LZU 41 p eL43 9986
93 5LZV 41 p eL43 9986
94 5LZW 41 p eL43 9986
95 5LZX 41 p eL43 9986
96 5LZY 41 p eL43 9986
97 5LZZ 41 p eL43 9986
98 5T62 44 R 60S ribosomal protein L43-A 4932
99 5T6R 43 R 60S ribosomal protein L43-A 4932
100 5T5H 38 o 60S ribosomal protein L37a 5693
101 5T2A 39 m eL43 5661
102 5T2C 28 j 60S ribosomal protein L37a 9606
103 5LKS 44 Lp 60S ribosomal protein L37a 9606
104 5JUO 47 UA eL43 (yeast L43) 4932
105 5JUP 47 UA eL43 (yeast L43) 4932
106 5JUS 47 UA eL43 (yeast L43) 4932
107 5JUT 47 UA eL43 (yeast L43) 4932
108 5JUU 47 UA eL43 (yeast L43) 4932
109 5JCS 28 p 60S ribosomal protein L43-A 4932
110 5IT7 44 pp KLLA0E05941p 28985
111 3JCT 42 p 60S ribosomal protein L43-A 4932
112 3JCS 47 m ribosomal protein L43e 5661
113 5GAK 13 D 60S ribosomal protein L43-A 4932
114 5FL8 40 p 60S ribosomal protein L43-A 4932
115 5APN 43 p 60S ribosomal protein L43-A 4932
116 5APO 43 p 60S ribosomal protein L43-A 4932
117 3JBN 52 Ah 60S ribosomal protein eL43 5833
118 3JBO 55 Ah 60S ribosomal protein eL43 5833
119 3JBP 52 Ah 60S ribosomal protein eL43 5833
120 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
121 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
122 3JAG 41 p eL43 9986
123 3JAH 41 p eL43 9986
124 3JAI 41 p eL43 9986
125 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
126 5AJ0 44 Ap 60S ribosomal protein L37a 9606
127 3J92 40 p eL43 9986
128 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
129 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
130 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
131 3J7O 44 p Ribosomal protein eL43 9823
132 3J7P 45 p Ribosomal protein eL43 9823
133 3J7Q 44 p Ribosomal protein eL43 9823
134 3J7R 44 p Ribosomal protein eL43 9823
135 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
136 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
137 3J79 44 h 60S ribosomal protein eL43 5833
138 3J77 43 93 60S ribosomal protein L43 4932
139 3J78 43 93 60S ribosomal protein L43 4932
140 3J6X 45 83 60S ribosomal protein L43 4932
141 3J6Y 45 83 60S ribosomal protein L43 4932
142 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
143 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
144 4V7F 40 k 60S ribosomal protein L43 4932
145 4V7E 74 Cp 60S ribosomal protein L43E 4565
146 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
147 4V6W 77 Cp 60S ribosomal protein L37a 7227
148 4V6X 77 Cp 60S ribosomal protein L37a 9606
149 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
150 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
151 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
152 4ADX 36 Z RPL37AE 145262
153 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
154 4V7H 24 B9 60S ribosomal protein L43 5541
155 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
156 1YSH 5 D ribosomal protein L37a 4530
157 4V4B 47 B9 60S ribosomal protein L43 4932