Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 595
95 % 35 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 804
50 % 35 199 202
40 % 45 591 21
30 % 45 591 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47946
95 % 1 1 39797
90 % 1 1 37923
70 % 35 68 805
50 % 35 198 205
40 % 35 198 222
30 % 35 198 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 526
95 % 35 74 660 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 683
70 % 35 74 727
50 % 35 74 790
40 % 35 196 223
30 % 35 196 239
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 518
95 % 35 74 646 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 671
70 % 35 74 715
50 % 35 76 761
40 % 35 76 793
30 % 35 79 760
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 608
95 % 35 68 749 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 774
70 % 35 68 821
50 % 35 70 841
40 % 35 70 874
30 % 35 70 860
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2806
95 % 35 68 752 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 777
70 % 35 68 824
50 % 35 68 880
40 % 35 72 839
30 % 35 72 840
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 596
95 % 35 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 758
70 % 35 68 806
50 % 35 70 850
40 % 35 70 881
30 % 35 71 854
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 625
95 % 35 68 740 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 764
70 % 35 68 813
50 % 35 68 869
40 % 35 68 896
30 % 35 196 240
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 531
95 % 35 74 662 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 685
70 % 35 74 731
50 % 35 77 751
40 % 44 455 46
30 % 44 455 63
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 522
95 % 35 74 653 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 676
70 % 35 74 721
50 % 35 205 197
40 % 35 206 212
30 % 35 206 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 568
95 % 33 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 728
70 % 33 70 774
50 % 33 70 842
40 % 33 70 868
30 % 33 70 862
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 523
95 % 35 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 677
70 % 35 74 722
50 % 35 74 786
40 % 44 415 52
30 % 44 441 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 602
95 % 35 68 741 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 765
70 % 35 68 814
50 % 35 68 870
40 % 35 70 872
30 % 35 71 853
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 609
95 % 35 68 750 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 775
70 % 35 68 822
50 % 35 68 878
40 % 35 68 902
30 % 35 70 867
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58140
95 % 3 5 15018 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14710
70 % 3 5 13764
50 % 3 5 12179
40 % 3 5 10920
30 % 3 5 9293
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2708
95 % 3 21 3043
90 % 3 21 3091
70 % 3 21 3037
50 % 7 30 2112
40 % 7 148 286
30 % 9 152 291
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 611
95 % 35 68 734 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 807
50 % 35 69 852
40 % 35 69 883
30 % 35 69 870
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58139
95 % 35 68 739 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 812
50 % 35 191 207
40 % 35 191 228
30 % 35 191 245
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 594
95 % 35 68 731 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 35 68 864
40 % 35 186 235
30 % 35 186 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 607
95 % 35 68 748 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 772
70 % 35 68 801
50 % 35 68 875
40 % 35 196 224
30 % 45 581 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2727
95 % 35 68 747 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 771
70 % 35 68 819
50 % 35 189 208
40 % 35 189 231
30 % 35 189 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60447
95 % 35 74 658 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 681
70 % 35 74 725
50 % 35 74 789
40 % 35 204 214
30 % 35 204 231
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 855
95 % 35 74 650 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 674
70 % 35 74 717
50 % 35 74 781
40 % 35 76 796
30 % 36 78 775
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 524
95 % 35 74 656 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 680
70 % 35 74 724
50 % 35 74 788
40 % 36 198 220
30 % 36 198 236
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2726
95 % 3 21 3060 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 51 107 392
40 % 58 128 309
30 % 72 271 153
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60444
95 % 1 1 49317
90 % 1 7 10986
70 % 3 27 2390
50 % 35 74 783
40 % 35 79 754
30 % 35 79 764
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 521
95 % 35 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 670
70 % 35 74 714
50 % 35 74 782
40 % 36 78 780
30 % 36 78 776

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 28 Z 50S ribosomal protein L37Ae 2238
2 1S72 28 Z 50S ribosomal protein L37Ae 2238
3 1JJ2 27 Y RIBOSOMAL PROTEIN L37Ae 2238
4 3G6E 27 Z 50S ribosomal protein L37Ae 2238
5 3CPW 27 Y 50S ribosomal protein L37Ae 2238
6 1M90 28 1 RIBOSOMAL PROTEIN L37Ae 2238
7 2OTL 27 Z 50S ribosomal protein L37Ae 2238
8 3G71 27 Z 50S ribosomal protein L37Ae 2238
9 1FFK 25 W RIBOSOMAL PROTEIN L37AE 2238
10 2OTJ 27 Z 50S ribosomal protein L37Ae 2238
11 4V88 79 Bp, Dp 60S ribosomal protein L43-A 4932
12 1KQS 29 Y RIBOSOMAL PROTEIN L37Ae 2238
13 3OW2 27 Y 50S ribosomal protein L37Ae 2238
14 4U4R 79 Q3, q3 60S ribosomal protein L43-A 4932
15 3CXC 28 Y RIBOSOMAL PROTEIN L37AE 2238
16 1QVG 28 Y L37Ae 50S ribosomal protein 2238
17 2QEX 27 Z 50S ribosomal protein L37Ae 2238
18 4U3U 79 Q3, q3 60S ribosomal protein L43-A 4932
19 5TBW 44 AQ, DR 60S ribosomal protein L43-A 4932
20 1KC8 27 1 RIBOSOMAL PROTEIN L37Ae 2238
21 4U3M 79 Q3, q3 60S ribosomal protein L43-A 4932
22 1N8R 27 1 50S ribosomal protein L37AE 2238
23 4U3N 79 Q3, q3 60S ribosomal protein L43-A 4932
24 1Q81 28 1 L37Ae 50S ribosomal protein 2238
25 1Q82 28 1 L37Ae 50S ribosomal protein 2238
26 1QVF 28 Y L37Ae 50S ribosomal protein 2238
27 4U52 79 Q3, q3 60S ribosomal protein L43-A 4932
28 4U4Q 79 Q3, q3 60S ribosomal protein L43-A 4932
29 1NJI 27 1 50S ribosomal protein L37AE 2238
30 4U6F 79 Q3, q3 60S ribosomal protein L43-A 4932
31 4U4U 79 Q3, q3 60S ribosomal protein L43-A 4932
32 1K73 27 1 RIBOSOMAL PROTEIN L37Ae 2238
33 4U4Z 79 Q3, q3 60S ribosomal protein L43-A 4932
34 4U4Y 79 Q3, q3 60S ribosomal protein L43-A 4932
35 4U4N 79 Q3, q3 60S ribosomal protein L43-A 4932
36 4U55 79 Q3, q3 60S ribosomal protein L43-A 4932
37 1K9M 27 1 RIBOSOMAL PROTEIN L37Ae 2238
38 1KD1 27 1 RIBOSOMAL PROTEIN L37Ae 2238
39 5DAT 79 Q3, q3 60S ribosomal protein L43-A 4932
40 5I4L 79 Q3, q3 60S ribosomal protein L43-A 4932
41 4U51 79 Q3, q3 60S ribosomal protein L43-A 4932
42 1K8A 27 1 RIBOSOMAL PROTEIN L37Ae 2238
43 5OBM 44 Q3, q3 60S ribosomal protein L43-A 4932
44 4U53 79 Q3, q3 60S ribosomal protein L43-A 4932
45 5ON6 45 AQ, DR 60S ribosomal protein L43-A 4932
46 1Q86 28 1 L37Ae 50S ribosomal protein 2238
47 4U50 79 Q3, q3 60S ribosomal protein L43-A 4932
48 5NDV 44 Q3, q3 60S ribosomal protein L43-A 4932
49 5LYB 79 Q3, q3 60S ribosomal protein L43-A 4932
50 1M1K 27 1 RIBOSOMAL PROTEIN L37Ae 2238
51 3G4S 27 Z 50S ribosomal protein L37Ae 2238
52 1W2B 30 Y 50S RIBOSOMAL PROTEIN L37AE 2238
53 4U56 79 Q3, q3 60S ribosomal protein L43-A 4932
54 2QA4 28 Z 50S ribosomal protein L37Ae 2238
55 5TGA 79 Q3, q3 60S ribosomal protein L43-A 4932
56 5MEI 45 AQ, DR 60S ribosomal protein L43-A 4932
57 1Q7Y 28 1 L37Ae 50S ribosomal protein 2238
58 5FCJ 79 Q3, q3 60S ribosomal protein L43-A 4932
59 4U4O 79 Q3, q3 60S ribosomal protein L43-A 4932
60 5DGV 79 Q3, q3 60S ribosomal protein L43-A 4932
61 5DGE 79 Q3, q3 60S ribosomal protein L43-A 4932
62 5NDW 67 Q3, q3 60S ribosomal protein L43-A 4932
63 4V8P 46 BY, CY, EY, GY RPL37A 5911
64 5NDG 79 Q3, q3 60S ribosomal protein L43-A 4932
65 5FCI 79 Q3, q3 60S ribosomal protein L43-A 4932
66 5DC3 79 Q3, q3 60S ribosomal protein L43-A 4932
67 5DGF 79 Q3, q3 60S ribosomal protein L43-A 4932
68 5TGM 79 Q3, q3 60S ribosomal protein L43-A 4932
69 4V7R 62 Bg, Dg 60S ribosomal protein L43 4932
70 6D9J 41 p eL43 9986
71 6D90 41 p eL43 9986
72 6FTG 41 p Ribosomal protein L37a 9986
73 6FTI 41 p Ribosomal protein L37a 9986
74 6FTJ 41 p Ribosomal protein L37a 9986
75 6FT6 41 p 60S ribosomal protein L43-A 4932
76 6FRK 49 p Ribosomal protein eL43 9986
77 6EK0 44 Lp 60S ribosomal protein L37a 9606
78 6AZ3 41 o ribosomal protein eL43 5661
79 5XY3 43 p Uncharacterized protein 5722
80 5XXB 43 o Ribosomal protein eL43 5811
81 5UMD 44 h 60S ribosomal protein L37a 5833
82 5MC6 60 AT 60S ribosomal protein L43-A 4932
83 5H4P 41 p 60S ribosomal protein L43-A 4932
84 5M1J 65 p5 60S ribosomal protein L43-B 4932
85 5LZS 41 p Uncharacterized protein 9986
86 5LZT 41 p eL43 9986
87 5LZU 41 p eL43 9986
88 5LZV 41 p eL43 9986
89 5LZW 41 p eL43 9986
90 5LZX 41 p eL43 9986
91 5LZY 41 p eL43 9986
92 5LZZ 41 p eL43 9986
93 5T62 44 R 60S ribosomal protein L43-A 4932
94 5T6R 43 R 60S ribosomal protein L43-A 4932
95 5T5H 38 o 60S ribosomal protein L37a 5693
96 5T2A 39 m eL43 5661
97 5T2C 28 j 60S ribosomal protein L37a 9606
98 5LKS 44 Lp 60S ribosomal protein L37a 9606
99 5JUO 47 UA eL43 (yeast L43) 4932
100 5JUP 47 UA eL43 (yeast L43) 4932
101 5JUS 47 UA eL43 (yeast L43) 4932
102 5JUT 47 UA eL43 (yeast L43) 4932
103 5JUU 47 UA eL43 (yeast L43) 4932
104 5JCS 28 p 60S ribosomal protein L43-A 4932
105 5IT7 44 pp KLLA0E05941p 28985
106 3JCT 42 p 60S ribosomal protein L43-A 4932
107 3JCS 47 m ribosomal protein L43e 5661
108 5GAK 13 D 60S ribosomal protein L43-A 4932
109 5FL8 40 p 60S ribosomal protein L43-A 4932
110 5APN 43 p 60S ribosomal protein L43-A 4932
111 5APO 43 p 60S ribosomal protein L43-A 4932
112 3JBN 52 Ah 60S ribosomal protein eL43 5833
113 3JBO 55 Ah 60S ribosomal protein eL43 5833
114 3JBP 52 Ah 60S ribosomal protein eL43 5833
115 3JAN 44 p Ribosomal protein eL43 SEE REMARK 999 9986
116 3JAJ 44 p Ribosomal protein eL43 SEE REMARK 999 9986
117 3JAG 41 p eL43 9986
118 3JAH 41 p eL43 9986
119 3JAI 41 p eL43 9986
120 4UG0 44 Lp 60S RIBOSOMAL PROTEIN L37A 9606
121 5AJ0 44 Ap 60S ribosomal protein L37a 9606
122 3J92 40 p eL43 9986
123 4D67 41 p 60S RIBOSOMAL PROTEIN L37A 9986
124 4D5Y 41 p 60S RIBOSOMAL PROTEIN EL43 9986
125 4V3P 83 Lm 60S ribosomal protein L37a, expressed 4565
126 3J7O 44 p Ribosomal protein eL43 9823
127 3J7P 45 p Ribosomal protein eL43 9823
128 3J7Q 44 p Ribosomal protein eL43 9823
129 3J7R 44 p Ribosomal protein eL43 9823
130 4UJC 47 Bp 60S RIBOSOMAL PROTEIN L37A 9986
131 4UJD 44 Ap 60S RIBOSOMAL PROTEIN L37A 9986
132 3J79 44 h 60S ribosomal protein eL43 5833
133 3J77 43 93 60S ribosomal protein L43 4932
134 3J78 43 93 60S ribosomal protein L43 4932
135 3J6X 45 83 60S ribosomal protein L43 4932
136 3J6Y 45 83 60S ribosomal protein L43 4932
137 4UJE 78 Cp 60S RIBOSOMAL PROTEIN L37A 9986
138 4V91 44 p EL43 RIBOSOMAL PROTEIN EL43 28985
139 4V7F 40 k 60S ribosomal protein L43 4932
140 4V7E 74 Cp 60S ribosomal protein L43E 4565
141 4V4N 55 Ai 50S ribosomal protein L37AE SEE REMARK 999 2190
142 4V6W 77 Cp 60S ribosomal protein L37a 7227
143 4V6X 77 Cp 60S ribosomal protein L37a 9606
144 4V8M 74 Bo 60S RIBOSOMAL PROTEIN L37A, PUTATIVE 185431
145 4V6U 45 Bi 50S ribosomal protein L37Ae 2261
146 4V8T 42 p 60S RIBOSOMAL PROTEIN L43-A 4932
147 4ADX 36 Z RPL37AE 145262
148 4V6I 63 Bm 60S ribosomal protein rpL43 (L37ae) 4932
149 4V7H 24 B9 60S ribosomal protein L43 5541
150 4V5Z 81 Bz 60S Ribosomal protein L37a 9612
151 1YSH 5 D ribosomal protein L37a 4530
152 4V4B 47 B9 60S ribosomal protein L43 4932