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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 8758 Members. Sequence cutoff: 40% Cluster size: 5 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 3G6E 26 Y 50S ribosomal protein L32e 2238  
2 3G71 26 Y 50S ribosomal protein L32e 2238  
3 1FFK 24 V RIBOSOMAL PROTEIN L32E 2238  
4 3OW2 26 X 50S ribosomal protein L32e 2238  
5 3G4S 26 Y 50S ribosomal protein L32e 2238  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 657
95% 36 68 471
90% 36 68 493
70% 36 68 532
50% 36 120 239
40% 36 120 265
30% 41 333 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49138
95% 1 1 34441
90% 1 1 32922
70% 36 68 525
50% 36 118 245
40% 36 118 271
30% 36 118 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 413
90% 36 74 437
70% 36 74 467
50% 36 74 515
40% 36 74 553
30% 40 325 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 494
40% 36 76 532
30% 36 78 517
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 473
90% 36 68 496
70% 36 68 535
50% 36 70 571
40% 36 70 604
30% 36 70 605
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1704
95% 36 68 469
90% 36 68 491
70% 36 68 530
50% 36 68 605
40% 36 70 601
30% 36 71 586
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 498
70% 36 68 537
50% 36 70 574
40% 36 70 608
30% 36 71 588
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 467
90% 36 68 489
70% 36 68 528
50% 36 68 602
40% 36 68 635
30% 36 121 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 416
90% 36 74 440
70% 36 74 470
50% 36 76 495
40% 36 78 511
30% 40 285 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 415
90% 36 74 439
70% 36 74 469
50% 36 127 221
40% 36 127 249
30% 36 127 266
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 451
90% 34 70 472
70% 34 70 508
50% 34 70 575
40% 34 70 609
30% 34 70 607
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 417
90% 36 74 441
70% 36 74 471
50% 36 74 517
40% 36 74 556
30% 36 74 552
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 468
90% 36 68 490
70% 36 68 529
50% 36 68 603
40% 36 70 600
30% 36 71 585
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 500
70% 36 68 539
50% 36 68 609
40% 36 68 640
30% 36 68 635
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52123
95% 3 5 11506
90% 3 5 11317
70% 3 5 10687
50% 3 5 9601
40% 3 5 8758
30% 3 5 7660
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57793
95% 1 1 40268
90% 1 1 38494
70% 3 21 2300
50% 7 30 1569
40% 7 76 416
30% 26 99 340
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 502
70% 36 68 541
50% 36 69 592
40% 36 69 626
30% 36 69 623
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59080
95% 36 68 480
90% 36 68 503
70% 36 68 542
50% 36 120 240
40% 36 120 267
30% 36 120 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 476
90% 36 68 499
70% 36 68 538
50% 36 68 608
40% 36 68 639
30% 36 119 288
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 466
90% 36 68 488
70% 36 68 527
50% 36 68 601
40% 36 119 269
30% 41 328 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1687
95% 36 68 463
90% 36 68 486
70% 36 68 524
50% 36 118 244
40% 36 120 264
30% 36 120 283
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43342
95% 36 74 406
90% 36 74 430
70% 36 74 461
50% 36 74 508
40% 36 124 256
30% 36 124 273
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7964
95% 36 74 409
90% 36 74 433
70% 36 74 464
50% 36 74 510
40% 36 76 530
30% 36 77 523
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 513
40% 36 125 253
30% 36 125 270
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1715
95% 3 21 2249
90% 36 68 495
70% 36 68 534
50% 51 95 309
40% 58 105 292
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51134
95% 1 1 35559
90% 1 7 8176
70% 3 27 1695
50% 36 74 514
40% 36 78 508
30% 36 78 518
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 414
90% 36 74 438
70% 36 74 468
50% 36 74 516
40% 37 77 521
30% 37 78 519
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.