Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 599
95 % 35 68 736 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 809
50 % 35 202 200
40 % 45 604 22
30 % 45 604 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48232
95 % 1 1 40015
90 % 1 1 38124
70 % 35 68 810
50 % 35 201 203
40 % 35 201 220
30 % 35 201 236
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 535
95 % 35 74 664 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 686
70 % 35 74 731
50 % 35 74 791
40 % 35 199 222
30 % 35 199 238
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 527
95 % 35 74 650 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 674
70 % 35 74 719
50 % 35 76 762
40 % 35 76 796
30 % 35 79 768
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 612
95 % 35 68 754 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 779
70 % 35 68 826
50 % 35 70 843
40 % 35 70 877
30 % 35 70 869
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2819
95 % 35 68 757 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 782
70 % 35 68 829
50 % 35 68 884
40 % 35 72 842
30 % 35 72 850
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 600
95 % 35 68 737 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 763
70 % 35 68 811
50 % 35 70 853
40 % 35 70 885
30 % 35 71 863
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 626
95 % 35 68 744 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 769
70 % 35 68 817
50 % 35 68 873
40 % 35 68 899
30 % 35 199 239
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 540
95 % 35 74 666 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 688
70 % 35 74 735
50 % 35 77 753
40 % 44 465 43
30 % 44 465 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 531
95 % 35 74 657 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 679
70 % 35 74 725
50 % 35 208 194
40 % 35 209 211
30 % 35 209 228
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 571
95 % 33 70 706 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 732
70 % 33 70 778
50 % 33 70 845
40 % 33 70 870
30 % 33 70 871
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 532
95 % 35 74 658 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 680
70 % 35 74 726
50 % 35 74 787
40 % 44 425 52
30 % 44 451 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 606
95 % 35 68 745 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 770
70 % 35 68 818
50 % 35 68 874
40 % 35 70 874
30 % 35 71 862
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 613
95 % 35 68 755 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 780
70 % 35 68 827
50 % 35 68 882
40 % 35 68 906
30 % 35 70 876
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58478
95 % 3 5 15112 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14798
70 % 3 5 13841
50 % 3 5 12250
40 % 3 5 10984
30 % 3 5 9346
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2723
95 % 3 21 3061
90 % 3 21 3112
70 % 3 21 3053
50 % 7 30 2085
40 % 7 151 280
30 % 9 155 284
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 615
95 % 35 68 738 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 764
70 % 35 68 812
50 % 35 69 855
40 % 35 69 887
30 % 35 69 880
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58477
95 % 35 68 748 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 773
70 % 35 68 821
50 % 35 194 207
40 % 35 194 228
30 % 35 194 244
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 598
95 % 35 68 735 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 761
70 % 35 68 808
50 % 35 68 867
40 % 35 189 233
30 % 35 189 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 611
95 % 35 68 753 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 777
70 % 35 68 805
50 % 35 68 879
40 % 35 199 223
30 % 45 593 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2742
95 % 35 68 752 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 776
70 % 35 68 824
50 % 35 192 208
40 % 35 192 230
30 % 35 192 246
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60794
95 % 35 74 662 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 684
70 % 35 74 729
50 % 35 74 790
40 % 35 207 212
30 % 35 207 229
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 861
95 % 35 74 654 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 677
70 % 35 74 721
50 % 35 74 782
40 % 35 76 799
30 % 36 78 781
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 533
95 % 35 74 660 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 683
70 % 35 74 728
50 % 35 74 789
40 % 36 201 219
30 % 36 201 234
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2741
95 % 3 21 3078 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 759
70 % 35 68 806
50 % 51 107 396
40 % 58 128 313
30 % 72 274 154
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60791
95 % 1 1 49595
90 % 1 7 11045
70 % 3 27 2403
50 % 35 74 784
40 % 35 79 758
30 % 35 79 772
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 530
95 % 35 74 655 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 672
70 % 35 74 718
50 % 35 74 783
40 % 36 78 784
30 % 36 78 783

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 26 X 50S ribosomal protein L31e 2238
2 1VQO 26 X 50S ribosomal protein L31e 2238
3 1VQ8 26 X 50S ribosomal protein L31e 2238
4 1S72 26 X 50S ribosomal protein L31e 2238
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238
6 1YHQ 26 X 50S ribosomal protein L31e 2238
7 1VQP 26 X 50S ribosomal protein L31e 2238
8 1VQM 26 X 50S ribosomal protein L31e 2238
9 3CC2 24 X 50S ribosomal protein L31e 2238
10 1VQL 26 X 50S ribosomal protein L31e 2238
11 1VQK 26 X 50S ribosomal protein L31e 2238
12 1VQN 27 X 50S ribosomal protein L31e 2238
13 1YIJ 26 X 50S ribosomal protein L31e 2238
14 1YI2 26 X 50S ribosomal protein L31e 2238
15 1VQ9 26 X 50S ribosomal protein L31e 2238
16 1VQ7 26 X 50S ribosomal protein L31e 2238
17 3CCM 24 X 50S ribosomal protein L31e 2238
18 1VQ5 26 X 50S ribosomal protein L31e 2238
19 3CC7 24 X 50S ribosomal protein L31e 2238
20 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238
21 3CCE 24 X 50S ribosomal protein L31e 2238
22 3G6E 25 X 50S ribosomal protein L31e 2238
23 3CPW 25 W 50S ribosomal protein L31e 2238
24 3CCU 24 X 50S ribosomal protein L31e 2238
25 1VQ6 27 X 50S ribosomal protein L31e 2238
26 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238
27 3CCL 24 X 50S ribosomal protein L31e 2238
28 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238
29 1YJ9 26 X 50S ribosomal protein L31e 2238
30 3CD6 24 X 50S ribosomal protein L31e 2238
31 3CCV 24 X 50S ribosomal protein L31e 2238
32 3CC4 24 X 50S ribosomal protein L31e 2238
33 2OTL 25 X 50S ribosomal protein L31e 2238
34 3G71 25 X 50S ribosomal protein L31e 2238
35 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238
36 1VQ4 26 X 50S ribosomal protein L31e 2238
37 1YJN 26 X 50S ribosomal protein L31e 2238
38 3CMA 24 X 50S ribosomal protein L31e 2238
39 3CCS 24 X 50S ribosomal protein L31e 2238
40 3CCQ 24 X 50S ribosomal protein L31e 2238
41 3I56 24 X 50S ribosomal protein L31e 2238
42 3CCR 24 X 50S ribosomal protein L31e 2238
43 2OTJ 25 X 50S ribosomal protein L31e 2238
44 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238
45 3OW2 25 W 50S ribosomal protein L31e 2238
46 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238
47 1QVG 26 W 50S ribosomal protein L31e 2238
48 3CME 24 X 50S ribosomal protein L31e 2238
49 2QEX 25 X 50S ribosomal protein L31e 2238
50 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238
51 1N8R 25 Y 50S ribosomal protein L31E 2238
52 1Q81 26 Y 50S ribosomal protein L31e 2238
53 1Q82 26 Y 50S ribosomal protein L31e 2238
54 1QVF 26 W 50S ribosomal protein L31e 2238
55 1NJI 25 Y 50S ribosomal protein L31E 2238
56 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238
57 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238
58 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238
59 3I55 25 X 50S ribosomal protein L31e 2238
60 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238
61 1Q86 26 Y 50S ribosomal protein L31e 2238
62 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238
63 3G4S 25 X 50S ribosomal protein L31e 2238
64 3CCJ 24 X 50S ribosomal protein L31e 2238
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238
68 4ADX 34 X RPL31E 145262