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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 579 Members. Sequence cutoff: 50% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 26 X 50S ribosomal protein L31e 272569  
2 1VQO 26 X 50S ribosomal protein L31e 2238  
3 1VQ8 26 X 50S ribosomal protein L31e 2238  
4 1S72 26 X 50S ribosomal protein L31e 2238  
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238  
6 1YHQ 26 X 50S ribosomal protein L31e 2238  
7 1VQP 26 X 50S ribosomal protein L31e 2238  
8 1VQM 26 X 50S ribosomal protein L31e 2238  
9 3CC2 24 X 50S ribosomal protein L31e 2238  
10 1VQL 26 X 50S ribosomal protein L31e 2238  
11 1VQK 26 X 50S ribosomal protein L31e 2238  
12 1VQN 27 X 50S ribosomal protein L31e 2238  
13 1YIJ 26 X 50S ribosomal protein L31e 2238  
14 1YI2 26 X 50S ribosomal protein L31e 2238  
15 1VQ9 26 X 50S ribosomal protein L31e 2238  
16 1VQ7 26 X 50S ribosomal protein L31e 2238  
17 3CCM 24 X 50S ribosomal protein L31e 2238  
18 1VQ5 26 X 50S ribosomal protein L31e 2238  
19 3CCJ 24 X 50S ribosomal protein L31e 2238  
20 3CC7 24 X 50S ribosomal protein L31e 2238  
21 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238  
22 3CCE 24 X 50S ribosomal protein L31e 2238  
23 3G6E 25 X 50S ribosomal protein L31e 2238  
24 3CPW 25 W 50S ribosomal protein L31e 2238  
25 3CCU 24 X 50S ribosomal protein L31e 2238  
26 1VQ6 27 X 50S ribosomal protein L31e 2238  
27 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238  
28 3CCL 24 X 50S ribosomal protein L31e 2238  
29 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238  
30 1YJ9 26 X 50S ribosomal protein L31e 2238  
31 3CD6 24 X 50S ribosomal protein L31e 2238  
32 3CCV 24 X 50S ribosomal protein L31e 2238  
33 3CC4 24 X 50S ribosomal protein L31e 2238  
34 2OTL 25 X 50S ribosomal protein L31e 2238  
35 3G71 25 X 50S ribosomal protein L31e 2238  
36 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238  
37 1VQ4 26 X 50S ribosomal protein L31e 2238  
38 1YJN 26 X 50S ribosomal protein L31e 2238  
39 3CMA 24 X 50S ribosomal protein L31e 2238  
40 3CCS 24 X 50S ribosomal protein L31e 2238  
41 3CCQ 24 X 50S ribosomal protein L31e 2238  
42 3I56 24 X 50S ribosomal protein L31e 2238  
43 3CCR 24 X 50S ribosomal protein L31e 2238  
44 2OTJ 25 X 50S ribosomal protein L31e 2238  
45 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238  
46 3OW2 25 W 50S ribosomal protein L31e 2238  
47 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238  
48 1QVG 26 W 50S ribosomal protein L31e 2238  
49 3CME 24 X 50S ribosomal protein L31e 2238  
50 2QEX 25 X 50S ribosomal protein L31e 2238  
51 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238  
52 1N8R 25 Y 50S ribosomal protein L31E 2238  
53 1Q81 26 Y 50S ribosomal protein L31e 2238  
54 1Q82 26 Y 50S ribosomal protein L31e 2238  
55 1QVF 26 W 50S ribosomal protein L31e 2238  
56 1NJI 25 Y 50S ribosomal protein L31E 2238  
57 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238  
58 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238  
59 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238  
60 3I55 25 X 50S ribosomal protein L31e 2238  
61 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238  
62 1Q86 26 Y 50S ribosomal protein L31e 2238  
63 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238  
64 3G4S 25 X 50S ribosomal protein L31e 2238  
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238  
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238  
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238  
68 4ADX 34 X RPL31E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 617
95% 36 68 457
90% 36 68 481
70% 36 68 516
50% 36 139 233
40% 36 139 261
30% 39 453 46
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47408
95% 1 1 33295
90% 1 1 31841
70% 36 68 509
50% 36 137 237
40% 36 137 270
30% 36 137 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 401
90% 36 74 426
70% 36 74 453
50% 36 74 500
40% 36 74 535
30% 38 445 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 399
90% 36 74 424
70% 36 74 451
50% 36 76 482
40% 36 76 514
30% 36 78 506
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 459
90% 36 68 484
70% 36 68 519
50% 36 70 545
40% 36 70 578
30% 36 70 576
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1634
95% 36 68 455
90% 36 68 479
70% 36 68 514
50% 36 68 574
40% 36 70 577
30% 36 71 558
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 461
90% 36 68 486
70% 36 68 521
50% 36 70 547
40% 36 70 581
30% 36 71 561
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 332
95% 36 68 452
90% 36 68 477
70% 36 68 512
50% 36 68 571
40% 36 68 609
30% 36 140 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 404
90% 36 74 429
70% 36 74 457
50% 36 76 484
40% 36 78 496
30% 38 386 69
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 403
90% 36 74 428
70% 36 74 456
50% 36 146 215
40% 36 146 244
30% 36 146 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 307
95% 34 70 438
90% 34 70 460
70% 34 70 494
50% 34 70 549
40% 34 70 583
30% 34 70 578
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 405
90% 36 74 430
70% 36 74 458
50% 36 74 504
40% 36 74 538
30% 36 74 538
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 453
90% 36 68 478
70% 36 68 513
50% 36 68 572
40% 36 70 576
30% 36 71 557
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 523
50% 36 68 579
40% 36 68 616
30% 36 68 607
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50340
95% 3 5 11135
90% 3 5 10956
70% 3 5 10360
50% 3 5 9313
40% 3 5 8493
30% 3 5 7456
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55898
95% 1 1 39028
90% 1 1 37332
70% 3 21 2215
50% 7 30 1506
40% 7 92 409
30% 26 115 332
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 525
50% 36 69 562
40% 36 69 601
30% 36 69 596
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57165
95% 36 68 466
90% 36 68 491
70% 36 68 526
50% 36 139 235
40% 36 139 263
30% 36 139 278
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 462
90% 36 68 487
70% 36 68 522
50% 36 68 578
40% 36 68 615
30% 36 138 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 476
70% 36 68 511
50% 36 68 569
40% 36 138 266
30% 39 448 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1617
95% 35 67 469
90% 35 67 494
70% 35 67 532
50% 35 136 242
40% 35 138 265
30% 35 138 284
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41787
95% 36 74 394
90% 36 74 420
70% 36 74 448
50% 36 74 495
40% 36 143 250
30% 36 143 264
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7624
95% 36 74 397
90% 36 74 422
70% 36 74 450
50% 36 74 497
40% 36 76 513
30% 36 77 511
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 400
90% 36 74 425
70% 36 74 452
50% 36 74 498
40% 36 143 251
30% 36 143 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1644
95% 3 21 2158
90% 36 68 483
70% 36 68 518
50% 51 97 296
40% 57 106 285
30% 57 108 302
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49370
95% 1 1 34396
90% 1 7 7917
70% 3 27 1633
50% 36 74 499
40% 36 78 493
30% 36 78 508
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 402
90% 36 74 427
70% 36 74 454
50% 36 74 501
40% 37 77 504
30% 37 78 509
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.