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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 584 Members. Sequence cutoff: 30% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 26 X 50S ribosomal protein L31e 272569  
2 1VQO 26 X 50S ribosomal protein L31e 2238  
3 1VQ8 26 X 50S ribosomal protein L31e 2238  
4 1S72 26 X 50S ribosomal protein L31e 2238  
5 1JJ2 25 W RIBOSOMAL PROTEIN L31E 2238  
6 1YHQ 26 X 50S ribosomal protein L31e 2238  
7 1VQP 26 X 50S ribosomal protein L31e 2238  
8 1VQM 26 X 50S ribosomal protein L31e 2238  
9 3CC2 24 X 50S ribosomal protein L31e 2238  
10 1VQL 26 X 50S ribosomal protein L31e 2238  
11 1VQK 26 X 50S ribosomal protein L31e 2238  
12 1VQN 27 X 50S ribosomal protein L31e 2238  
13 1YIJ 26 X 50S ribosomal protein L31e 2238  
14 1YI2 26 X 50S ribosomal protein L31e 2238  
15 1VQ9 26 X 50S ribosomal protein L31e 2238  
16 1VQ7 26 X 50S ribosomal protein L31e 2238  
17 3CCM 24 X 50S ribosomal protein L31e 2238  
18 1VQ5 26 X 50S ribosomal protein L31e 2238  
19 3CCJ 24 X 50S ribosomal protein L31e 2238  
20 3CC7 24 X 50S ribosomal protein L31e 2238  
21 1YIT 30 X 50S RIBOSOMAL PROTEIN L31E 2238  
22 3CCE 24 X 50S ribosomal protein L31e 2238  
23 3G6E 25 X 50S ribosomal protein L31e 2238  
24 3CPW 25 W 50S ribosomal protein L31e 2238  
25 3CCU 24 X 50S ribosomal protein L31e 2238  
26 1VQ6 27 X 50S ribosomal protein L31e 2238  
27 1M90 26 Y RIBOSOMAL PROTEIN L31E 2238  
28 3CCL 24 X 50S ribosomal protein L31e 2238  
29 1YJW 30 X 50S RIBOSOMAL PROTEIN L31E 2238  
30 1YJ9 26 X 50S ribosomal protein L31e 2238  
31 3CD6 24 X 50S ribosomal protein L31e 2238  
32 3CCV 24 X 50S ribosomal protein L31e 2238  
33 3CC4 24 X 50S ribosomal protein L31e 2238  
34 2OTL 25 X 50S ribosomal protein L31e 2238  
35 3G71 25 X 50S ribosomal protein L31e 2238  
36 1FFK 23 U RIBOSOMAL PROTEIN L31E 2238  
37 1VQ4 26 X 50S ribosomal protein L31e 2238  
38 1YJN 26 X 50S ribosomal protein L31e 2238  
39 3CMA 24 X 50S ribosomal protein L31e 2238  
40 3CCS 24 X 50S ribosomal protein L31e 2238  
41 3CCQ 24 X 50S ribosomal protein L31e 2238  
42 3I56 24 X 50S ribosomal protein L31e 2238  
43 3CCR 24 X 50S ribosomal protein L31e 2238  
44 2OTJ 25 X 50S ribosomal protein L31e 2238  
45 1KQS 27 W RIBOSOMAL PROTEIN L31E 2238  
46 3OW2 25 W 50S ribosomal protein L31e 2238  
47 3CXC 26 W RIBOSOMAL PROTEIN L31E 2238  
48 1QVG 26 W 50S ribosomal protein L31e 2238  
49 3CME 24 X 50S ribosomal protein L31e 2238  
50 2QEX 25 X 50S ribosomal protein L31e 2238  
51 1KC8 25 Y RIBOSOMAL PROTEIN L31E 2238  
52 1N8R 25 Y 50S ribosomal protein L31E 2238  
53 1Q81 26 Y 50S ribosomal protein L31e 2238  
54 1Q82 26 Y 50S ribosomal protein L31e 2238  
55 1QVF 26 W 50S ribosomal protein L31e 2238  
56 1NJI 25 Y 50S ribosomal protein L31E 2238  
57 1K73 25 Y RIBOSOMAL PROTEIN L31E 2238  
58 1K9M 25 Y RIBOSOMAL PROTEIN L31E 2238  
59 1KD1 25 Y RIBOSOMAL PROTEIN L31E 2238  
60 3I55 25 X 50S ribosomal protein L31e 2238  
61 1K8A 25 Y RIBOSOMAL PROTEIN L31E 2238  
62 1Q86 26 Y 50S ribosomal protein L31e 2238  
63 1M1K 25 Y RIBOSOMAL PROTEIN L31E 2238  
64 3G4S 25 X 50S ribosomal protein L31e 2238  
65 1W2B 28 W 50S RIBOSOMAL PROTEIN L31E 2238  
66 2QA4 26 X 50S RIBOSOMAL PROTEIN L31E 2238  
67 1Q7Y 26 Y 50S ribosomal protein L31e 2238  
68 4ADX 34 X RPL31E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 547
95% 36 68 448
90% 36 68 470
70% 36 68 501
50% 36 105 320
40% 36 105 344
30% 37 402 56
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46499
95% 1 1 32661
90% 1 1 31249
70% 36 68 494
50% 36 103 330
40% 36 103 353
30% 36 103 364
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 276
95% 36 74 395
90% 36 74 419
70% 36 74 444
50% 36 74 492
40% 36 74 523
30% 36 394 62
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 274
95% 36 74 393
90% 36 74 417
70% 36 74 442
50% 36 76 475
40% 36 76 504
30% 36 78 499
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 312
95% 36 68 450
90% 36 68 473
70% 36 68 504
50% 36 70 529
40% 36 70 556
30% 36 70 561
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1530
95% 36 68 446
90% 36 68 468
70% 36 68 499
50% 36 68 554
40% 36 70 555
30% 36 71 547
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 452
90% 36 68 475
70% 36 68 506
50% 36 70 531
40% 36 70 559
30% 36 71 549
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 326
95% 36 68 444
90% 36 68 466
70% 36 68 497
50% 36 68 551
40% 36 68 583
30% 36 106 349
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 422
70% 36 74 447
50% 36 76 476
40% 36 78 486
30% 36 369 73
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 421
70% 36 74 446
50% 36 112 286
40% 36 112 310
30% 36 112 327
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 302
95% 34 70 428
90% 34 70 448
70% 34 70 477
50% 34 70 532
40% 34 70 560
30% 34 70 562
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 399
90% 36 74 423
70% 36 74 448
50% 36 74 494
40% 36 74 525
30% 36 74 527
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 310
95% 36 68 445
90% 36 68 467
70% 36 68 498
50% 36 68 552
40% 36 70 554
30% 36 71 546
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 454
90% 36 68 477
70% 36 68 508
50% 36 68 558
40% 36 68 588
30% 36 68 584
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49388
95% 3 5 10947
90% 3 5 10776
70% 3 5 10201
50% 3 5 9164
40% 3 5 8364
30% 3 5 7351
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54893
95% 1 1 38322
90% 1 1 36679
70% 3 21 2123
50% 7 30 1449
40% 7 58 695
30% 26 81 477
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 479
70% 36 68 510
50% 36 69 544
40% 36 69 575
30% 36 69 575
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56150
95% 36 68 457
90% 36 68 480
70% 36 68 511
50% 36 105 323
40% 36 105 346
30% 36 105 357
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 453
90% 36 68 476
70% 36 68 507
50% 36 68 557
40% 36 68 587
30% 36 104 361
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 309
95% 36 68 443
90% 36 68 465
70% 36 68 496
50% 36 68 550
40% 36 104 349
30% 37 397 61
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1515
95% 35 67 461
90% 35 67 484
70% 35 67 517
50% 35 102 332
40% 35 104 347
30% 35 104 358
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40986
95% 36 74 388
90% 36 74 413
70% 36 74 439
50% 36 74 487
40% 36 109 318
30% 36 109 332
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7480
95% 36 74 391
90% 36 74 415
70% 36 74 441
50% 36 74 489
40% 36 76 503
30% 36 77 505
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 275
95% 36 74 394
90% 36 74 418
70% 36 74 443
50% 36 74 490
40% 36 109 321
30% 36 109 335
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1541
95% 3 21 2051
90% 36 68 472
70% 36 68 503
50% 51 97 279
40% 57 106 271
30% 57 108 290
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48436
95% 1 1 33746
90% 1 7 7780
70% 3 27 1543
50% 36 74 491
40% 36 78 483
30% 36 78 501
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 396
90% 36 74 420
70% 36 74 445
50% 36 74 493
40% 37 77 495
30% 37 78 502
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.