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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 464 Members. Sequence cutoff: 95% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 25 W 50S ribosomal protein L30P 272569  
2 1VQO 25 W 50S ribosomal protein L30P 2238  
3 1VQ8 25 W 50S ribosomal protein L30P 2238  
4 1S72 25 W 50S ribosomal protein L30P 2238  
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238  
6 1YHQ 25 W 50S ribosomal protein L30P 2238  
7 1VQP 25 W 50S ribosomal protein L30P 2238  
8 1VQM 25 W 50S ribosomal protein L30P 2238  
9 3CC2 23 W 50S ribosomal protein L30P 2238  
10 1VQL 25 W 50S ribosomal protein L30P 2238  
11 1VQK 25 W 50S ribosomal protein L30P 2238  
12 1VQN 26 W 50S ribosomal protein L30P 2238  
13 1YIJ 25 W 50S ribosomal protein L30P 2238  
14 1YI2 25 W 50S ribosomal protein L30P 2238  
15 1VQ9 25 W 50S ribosomal protein L30P 2238  
16 1VQ7 25 W 50S ribosomal protein L30P 2238  
17 3CCM 23 W 50S ribosomal protein L30P 272569  
18 1VQ5 25 W 50S ribosomal protein L30P 2238  
19 3CCJ 23 W 50S ribosomal protein L30P 272569  
20 3CC7 23 W 50S ribosomal protein L30P 2238  
21 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238  
22 3CCE 23 W 50S ribosomal protein L30P 272569  
23 3G6E 24 W 50S ribosomal protein L30P 2238  
24 3CPW 24 V 50S ribosomal protein L30P 272569  
25 3CCU 23 W 50S ribosomal protein L30P 272569  
26 1VQ6 26 W 50S ribosomal protein L30P 2238  
27 1M90 25 X RIBOSOMAL PROTEIN L30 2238  
28 3CCL 23 W 50S ribosomal protein L30P 272569  
29 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238  
30 1YJ9 25 W 50S ribosomal protein L30P 2238  
31 3CD6 23 W 50S ribosomal protein L30P 272569  
32 3CCV 23 W 50S ribosomal protein L30P 272569  
33 3CC4 23 W 50S ribosomal protein L30P 272569  
34 2OTL 24 W 50S ribosomal protein L30P 2238  
35 3G71 24 W 50S ribosomal protein L30P 2238  
36 1FFK 22 T RIBOSOMAL PROTEIN L30 2238  
37 1VQ4 25 W 50S ribosomal protein L30P 2238  
38 1YJN 25 W 50S ribosomal protein L30P 2238  
39 3CMA 23 W 50S ribosomal protein L30P 2238  
40 3CCS 23 W 50S ribosomal protein L30P 272569  
41 3CCQ 23 W 50S ribosomal protein L30P 272569  
42 3I56 23 W 50S ribosomal protein L30P 2238  
43 3CCR 23 W 50S ribosomal protein L30P 272569  
44 2OTJ 24 W 50S ribosomal protein L30P 2238  
45 1KQS 26 V RIBOSOMAL PROTEIN L30 2238  
46 3OW2 24 V 50S ribosomal protein L30P 2238  
47 3CXC 25 V RIBOSOMAL PROTEIN L30 2238  
48 1QVG 25 V 50S ribosomal protein L30P 2238  
49 3CME 23 W 50S ribosomal protein L30P 2238  
50 2QEX 24 W 50S ribosomal protein L30P 2238  
51 1KC8 24 X RIBOSOMAL PROTEIN L30 2238  
52 1N8R 24 X 50S ribosomal protein L30P 2238  
53 1Q81 25 X 50S ribosomal protein L30P 2238  
54 1Q82 25 X 50S ribosomal protein L30P 2238  
55 1QVF 25 V 50S ribosomal protein L30P 2238  
56 1NJI 24 X 50S ribosomal protein L30P 2238  
57 1K73 24 X RIBOSOMAL PROTEIN L30 2238  
58 1K9M 24 X RIBOSOMAL PROTEIN L30 2238  
59 1KD1 24 X RIBOSOMAL PROTEIN L30 2238  
60 3I55 24 W 50S ribosomal protein L30P 2238  
61 1K8A 24 X RIBOSOMAL PROTEIN L30 2238  
62 1Q86 25 X 50S ribosomal protein L30P 2238  
63 1M1K 24 X RIBOSOMAL PROTEIN L30 2238  
64 3G4S 24 W 50S ribosomal protein L30P 2238  
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238  
66 2QA4 25 W 50S ribosomal protein L30P 2238  
67 1Q7Y 25 X 50S ribosomal protein L30P 2238  
68 4ADX 33 W RPL30 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 649
95% 36 68 467
90% 36 68 488
70% 36 68 525
50% 36 118 239
40% 36 118 265
30% 38 325 49
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48618
95% 1 1 34064
90% 1 1 32571
70% 36 68 518
50% 36 116 246
40% 36 116 273
30% 36 116 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 411
90% 36 74 434
70% 36 74 464
50% 36 74 509
40% 36 74 549
30% 37 317 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 409
90% 36 74 432
70% 36 74 462
50% 36 76 489
40% 36 76 528
30% 36 78 513
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 528
50% 36 70 558
40% 36 70 592
30% 36 70 593
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1685
95% 36 68 465
90% 36 68 486
70% 36 68 523
50% 36 68 591
40% 36 70 590
30% 36 71 574
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 471
90% 36 68 493
70% 36 68 530
50% 36 70 561
40% 36 70 596
30% 36 71 576
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 334
95% 36 68 463
90% 36 68 484
70% 36 68 521
50% 36 68 588
40% 36 68 621
30% 36 119 283
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 414
90% 36 74 437
70% 36 74 467
50% 36 76 490
40% 36 78 507
30% 37 279 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 413
90% 36 74 436
70% 36 74 466
50% 36 125 225
40% 36 125 250
30% 36 125 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 311
95% 34 70 448
90% 34 70 468
70% 34 70 503
50% 34 70 562
40% 34 70 597
30% 34 70 595
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 415
90% 36 74 438
70% 36 74 468
50% 36 74 511
40% 36 74 551
30% 36 74 546
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 320
95% 36 68 464
90% 36 68 485
70% 36 68 522
50% 36 68 589
40% 36 70 589
30% 36 71 573
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 473
90% 36 68 495
70% 36 68 532
50% 36 68 596
40% 36 68 627
30% 36 68 619
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51587
95% 3 5 11415
90% 3 5 11228
70% 3 5 10606
50% 3 5 9527
40% 3 5 8694
30% 3 5 7615
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57230
95% 1 1 39876
90% 1 1 38130
70% 3 21 2272
50% 7 30 1549
40% 7 74 418
30% 26 97 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 475
90% 36 68 497
70% 36 68 534
50% 36 69 577
40% 36 69 614
30% 36 69 610
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58512
95% 36 68 476
90% 36 68 498
70% 36 68 535
50% 36 118 240
40% 36 118 266
30% 36 118 286
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 494
70% 36 68 531
50% 36 68 595
40% 36 68 626
30% 36 117 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 462
90% 36 68 483
70% 36 68 520
50% 36 68 587
40% 36 117 270
30% 38 320 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1667
95% 35 67 479
90% 35 67 501
70% 35 67 541
50% 35 115 249
40% 35 117 268
30% 35 117 287
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42865
95% 36 74 404
90% 36 74 427
70% 36 74 458
50% 36 74 502
40% 36 122 257
30% 36 122 274
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7876
95% 36 74 407
90% 36 74 430
70% 36 74 461
50% 36 74 504
40% 36 76 526
30% 36 77 519
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 410
90% 36 74 433
70% 36 74 463
50% 36 74 507
40% 36 122 260
30% 36 122 276
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1697
95% 3 21 2218
90% 36 68 490
70% 36 68 527
50% 51 95 303
40% 58 105 291
30% 58 107 307
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50604
95% 1 1 35177
90% 1 7 8099
70% 3 27 1670
50% 36 74 508
40% 36 78 504
30% 36 78 514
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 412
90% 36 74 435
70% 36 74 465
50% 36 74 510
40% 37 77 517
30% 37 78 515
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.