Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 613
95 % 35 68 749 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 777
70 % 35 68 827
50 % 35 202 201
40 % 45 605 22
30 % 45 605 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48521
95 % 1 1 40229
90 % 1 1 38314
70 % 35 68 828
50 % 35 201 204
40 % 35 201 222
30 % 35 201 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 544
95 % 35 74 678 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 700
70 % 35 74 747
50 % 35 74 800
40 % 35 199 224
30 % 35 199 240
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 536
95 % 35 74 664 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 688
70 % 35 74 735
50 % 35 76 771
40 % 35 76 803
30 % 35 79 775
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 624
95 % 35 68 765 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 793
70 % 35 68 845
50 % 35 70 851
40 % 35 70 882
30 % 35 70 872
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2854
95 % 35 68 769 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 797
70 % 35 68 847
50 % 35 68 893
40 % 35 72 848
30 % 35 72 855
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 614
95 % 35 68 750 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 778
70 % 35 68 829
50 % 35 70 861
40 % 35 70 892
30 % 35 71 867
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 637
95 % 35 68 756 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 784
70 % 35 68 835
50 % 35 68 882
40 % 35 68 907
30 % 35 199 241
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 548
95 % 35 74 679 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 703
70 % 35 74 752
50 % 35 77 759
40 % 44 466 46
30 % 44 466 64
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 540
95 % 35 74 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 693
70 % 35 74 741
50 % 35 208 195
40 % 35 209 213
30 % 35 209 231
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 587
95 % 33 70 726 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 754
70 % 33 70 797
50 % 33 70 852
40 % 33 70 875
30 % 33 70 874
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 672 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 694
70 % 35 74 742
50 % 35 74 796
40 % 44 426 54
30 % 44 452 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 618
95 % 35 68 757 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 785
70 % 35 68 836
50 % 35 68 883
40 % 35 70 880
30 % 35 71 866
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 625
95 % 35 68 766 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 794
70 % 35 68 846
50 % 35 68 891
40 % 35 68 915
30 % 35 70 878
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58791
95 % 3 5 15202 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14887
70 % 3 5 13919
50 % 3 5 12321
40 % 3 5 11049
30 % 3 5 9392
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2758
95 % 3 21 3094
90 % 3 21 3145
70 % 3 21 3085
50 % 7 30 2109
40 % 7 151 282
30 % 9 155 286
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 626
95 % 35 68 751 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 779
70 % 35 68 830
50 % 35 69 863
40 % 35 69 894
30 % 35 69 883
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58790
95 % 35 68 759 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 787
70 % 35 68 839
50 % 35 194 208
40 % 35 194 230
30 % 35 194 245
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 612
95 % 35 68 748 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 776
70 % 35 68 826
50 % 35 68 876
40 % 35 189 236
30 % 35 189 252
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 622
95 % 35 68 764 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 791
70 % 35 68 823
50 % 35 68 888
40 % 35 199 225
30 % 45 594 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2776
95 % 35 68 763 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 790
70 % 35 68 843
50 % 35 192 210
40 % 35 192 233
30 % 35 192 247
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61133
95 % 35 74 676 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 698
70 % 35 74 745
50 % 35 74 799
40 % 35 207 214
30 % 35 207 232
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 873
95 % 35 74 668 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 691
70 % 35 74 737
50 % 35 74 791
40 % 35 76 806
30 % 36 78 785
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 674 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 697
70 % 35 74 744
50 % 35 74 798
40 % 36 201 221
30 % 36 201 236
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2775
95 % 3 21 3108 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 774
70 % 35 68 824
50 % 51 107 400
40 % 58 128 319
30 % 72 274 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61130
95 % 1 1 49835
90 % 1 7 11279
70 % 3 27 2422
50 % 35 74 793
40 % 35 79 766
30 % 35 79 779
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 539
95 % 35 74 669 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 685
70 % 35 74 731
50 % 35 74 792
40 % 36 78 787
30 % 36 78 787

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 25 W 50S ribosomal protein L30P 2238
2 1VQO 25 W 50S ribosomal protein L30P 2238
3 1VQ8 25 W 50S ribosomal protein L30P 2238
4 1S72 25 W 50S ribosomal protein L30P 2238
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238
6 1YHQ 25 W 50S ribosomal protein L30P 2238
7 1VQP 25 W 50S ribosomal protein L30P 2238
8 1VQM 25 W 50S ribosomal protein L30P 2238
9 3CC2 23 W 50S ribosomal protein L30P 2238
10 1VQL 25 W 50S ribosomal protein L30P 2238
11 1VQK 25 W 50S ribosomal protein L30P 2238
12 1VQN 26 W 50S ribosomal protein L30P 2238
13 1YIJ 25 W 50S ribosomal protein L30P 2238
14 1YI2 25 W 50S ribosomal protein L30P 2238
15 1VQ9 25 W 50S ribosomal protein L30P 2238
16 1VQ7 25 W 50S ribosomal protein L30P 2238
17 3CCM 23 W 50S ribosomal protein L30P 2238
18 1VQ5 25 W 50S ribosomal protein L30P 2238
19 3CC7 23 W 50S ribosomal protein L30P 2238
20 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238
21 3CCE 23 W 50S ribosomal protein L30P 2238
22 3G6E 24 W 50S ribosomal protein L30P 2238
23 3CPW 24 V 50S ribosomal protein L30P 2238
24 3CCU 23 W 50S ribosomal protein L30P 2238
25 1VQ6 26 W 50S ribosomal protein L30P 2238
26 1M90 25 X RIBOSOMAL PROTEIN L30 2238
27 3CCL 23 W 50S ribosomal protein L30P 2238
28 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238
29 1YJ9 25 W 50S ribosomal protein L30P 2238
30 3CD6 23 W 50S ribosomal protein L30P 2238
31 3CCV 23 W 50S ribosomal protein L30P 2238
32 3CC4 23 W 50S ribosomal protein L30P 2238
33 2OTL 24 W 50S ribosomal protein L30P 2238
34 3G71 24 W 50S ribosomal protein L30P 2238
35 1FFK 22 T RIBOSOMAL PROTEIN L30 2238
36 1VQ4 25 W 50S ribosomal protein L30P 2238
37 1YJN 25 W 50S ribosomal protein L30P 2238
38 3CMA 23 W 50S ribosomal protein L30P 2238
39 3CCS 23 W 50S ribosomal protein L30P 2238
40 3CCQ 23 W 50S ribosomal protein L30P 2238
41 3I56 23 W 50S ribosomal protein L30P 2238
42 3CCR 23 W 50S ribosomal protein L30P 2238
43 2OTJ 24 W 50S ribosomal protein L30P 2238
44 1KQS 26 V RIBOSOMAL PROTEIN L30 2238
45 3OW2 24 V 50S ribosomal protein L30P 2238
46 3CXC 25 V RIBOSOMAL PROTEIN L30 2238
47 1QVG 25 V 50S ribosomal protein L30P 2238
48 3CME 23 W 50S ribosomal protein L30P 2238
49 2QEX 24 W 50S ribosomal protein L30P 2238
50 1KC8 24 X RIBOSOMAL PROTEIN L30 2238
51 1N8R 24 X 50S ribosomal protein L30P 2238
52 1Q81 25 X 50S ribosomal protein L30P 2238
53 1Q82 25 X 50S ribosomal protein L30P 2238
54 1QVF 25 V 50S ribosomal protein L30P 2238
55 1NJI 24 X 50S ribosomal protein L30P 2238
56 1K73 24 X RIBOSOMAL PROTEIN L30 2238
57 1K9M 24 X RIBOSOMAL PROTEIN L30 2238
58 1KD1 24 X RIBOSOMAL PROTEIN L30 2238
59 3I55 24 W 50S ribosomal protein L30P 2238
60 1K8A 24 X RIBOSOMAL PROTEIN L30 2238
61 1Q86 25 X 50S ribosomal protein L30P 2238
62 1M1K 24 X RIBOSOMAL PROTEIN L30 2238
63 3G4S 24 W 50S ribosomal protein L30P 2238
64 3CCJ 23 W 50S ribosomal protein L30P 2238
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238
66 2QA4 25 W 50S ribosomal protein L30P 2238
67 1Q7Y 25 X 50S ribosomal protein L30P 2238
68 4ADX 33 W RPL30 145262