Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 856
95 % 35 68 690 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 719
70 % 35 68 772
50 % 35 178 202
40 % 43 534 20
30 % 43 534 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60591
95 % 1 1 42268
90 % 1 1 40182
70 % 35 68 763
50 % 35 174 207
40 % 35 174 230
30 % 35 174 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 618 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 646
70 % 35 74 685
50 % 35 74 736
40 % 35 74 768
30 % 42 514 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 444
95 % 35 74 616
90 % 35 74 644
70 % 35 74 682
50 % 35 76 706
40 % 35 76 741
30 % 35 79 697
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 504
95 % 35 68 691 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 721
70 % 35 68 774
50 % 35 70 791
40 % 35 70 826
30 % 35 70 815
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2248
95 % 35 68 689 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 717
70 % 35 68 770
50 % 35 68 819
40 % 35 72 798
30 % 35 72 790
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 505
95 % 35 68 693 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 723
70 % 35 68 776
50 % 35 70 792
40 % 35 70 827
30 % 35 71 801
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 515
95 % 35 68 687 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 715
70 % 35 68 767
50 % 35 68 816
40 % 35 68 852
30 % 35 177 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 622 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 76 711
40 % 35 78 717
30 % 42 419 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 690
50 % 35 182 198
40 % 35 182 217
30 % 35 182 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 478
95 % 33 70 666 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 690
70 % 33 70 743
50 % 33 70 793
40 % 33 70 828
30 % 33 70 817
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 623 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 651
70 % 35 74 694
50 % 35 74 743
40 % 42 383 58
30 % 42 409 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 501
95 % 35 68 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 716
70 % 35 68 768
50 % 35 68 817
40 % 35 70 823
30 % 35 71 800
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 507
95 % 35 68 695 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 725
70 % 35 68 778
50 % 35 68 823
40 % 35 68 856
30 % 35 68 842
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63972
95 % 3 5 14391 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 5 14115
70 % 3 5 13242
50 % 3 5 11773
40 % 3 5 10679
30 % 3 5 9262
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70314
95 % 1 1 48740
90 % 1 1 46284
70 % 3 21 2938
50 % 7 30 1965
40 % 7 131 300
30 % 26 154 266
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 508
95 % 35 68 696 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 779
50 % 35 69 804
40 % 35 69 840
30 % 35 69 831
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71735
95 % 35 68 697 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 727
70 % 35 68 780
50 % 35 175 203
40 % 35 175 226
30 % 35 175 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 506
95 % 35 68 694 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 777
50 % 35 68 822
40 % 35 68 855
30 % 35 171 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 500
95 % 35 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 713
70 % 35 68 765
50 % 35 68 815
40 % 35 176 223
30 % 43 525 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2231
95 % 35 68 684 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 711
70 % 35 68 762
50 % 35 173 206
40 % 35 175 225
30 % 35 175 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53734
95 % 35 74 608 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 638
70 % 35 74 678
50 % 35 74 729
40 % 35 182 215
30 % 35 182 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10176
95 % 35 74 612 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 642
70 % 35 74 680
50 % 35 74 731
40 % 35 76 739
30 % 36 78 706
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 645
70 % 35 74 683
50 % 35 74 734
40 % 36 182 216
30 % 36 182 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2260
95 % 3 21 2902 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 720
70 % 35 68 773
50 % 50 105 345
40 % 57 124 284
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62869
95 % 1 1 43533
90 % 1 7 10271
70 % 3 27 2202
50 % 35 74 735
40 % 35 79 705
30 % 35 79 699
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 619 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 647
70 % 35 74 688
50 % 35 74 740
40 % 36 77 733
30 % 36 78 712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 25 W 50S ribosomal protein L30P 2238
2 1VQO 25 W 50S ribosomal protein L30P 2238
3 1VQ8 25 W 50S ribosomal protein L30P 2238
4 1S72 25 W 50S ribosomal protein L30P 2238
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238
6 1YHQ 25 W 50S ribosomal protein L30P 2238
7 1VQP 25 W 50S ribosomal protein L30P 2238
8 1VQM 25 W 50S ribosomal protein L30P 2238
9 3CC2 23 W 50S ribosomal protein L30P 2238
10 1VQL 25 W 50S ribosomal protein L30P 2238
11 1VQK 25 W 50S ribosomal protein L30P 2238
12 1VQN 26 W 50S ribosomal protein L30P 2238
13 1YIJ 25 W 50S ribosomal protein L30P 2238
14 1YI2 25 W 50S ribosomal protein L30P 2238
15 1VQ9 25 W 50S ribosomal protein L30P 2238
16 1VQ7 25 W 50S ribosomal protein L30P 2238
17 3CCM 23 W 50S ribosomal protein L30P 2238
18 1VQ5 25 W 50S ribosomal protein L30P 2238
19 3CC7 23 W 50S ribosomal protein L30P 2238
20 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238
21 3CCE 23 W 50S ribosomal protein L30P 2238
22 3G6E 24 W 50S ribosomal protein L30P 2238
23 3CPW 24 V 50S ribosomal protein L30P 2238
24 3CCU 23 W 50S ribosomal protein L30P 2238
25 1VQ6 26 W 50S ribosomal protein L30P 2238
26 1M90 25 X RIBOSOMAL PROTEIN L30 2238
27 3CCL 23 W 50S ribosomal protein L30P 2238
28 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238
29 1YJ9 25 W 50S ribosomal protein L30P 2238
30 3CD6 23 W 50S ribosomal protein L30P 2238
31 3CCV 23 W 50S ribosomal protein L30P 2238
32 3CC4 23 W 50S ribosomal protein L30P 2238
33 2OTL 24 W 50S ribosomal protein L30P 2238
34 3G71 24 W 50S ribosomal protein L30P 2238
35 1FFK 22 T RIBOSOMAL PROTEIN L30 2238
36 1VQ4 25 W 50S ribosomal protein L30P 2238
37 1YJN 25 W 50S ribosomal protein L30P 2238
38 3CMA 23 W 50S ribosomal protein L30P 2238
39 3CCS 23 W 50S ribosomal protein L30P 2238
40 3CCQ 23 W 50S ribosomal protein L30P 2238
41 3I56 23 W 50S ribosomal protein L30P 2238
42 3CCR 23 W 50S ribosomal protein L30P 2238
43 2OTJ 24 W 50S ribosomal protein L30P 2238
44 1KQS 26 V RIBOSOMAL PROTEIN L30 2238
45 3OW2 24 V 50S ribosomal protein L30P 2238
46 3CXC 25 V RIBOSOMAL PROTEIN L30 2238
47 1QVG 25 V 50S ribosomal protein L30P 2238
48 3CME 23 W 50S ribosomal protein L30P 2238
49 2QEX 24 W 50S ribosomal protein L30P 2238
50 1KC8 24 X RIBOSOMAL PROTEIN L30 2238
51 1N8R 24 X 50S ribosomal protein L30P 2238
52 1Q81 25 X 50S ribosomal protein L30P 2238
53 1Q82 25 X 50S ribosomal protein L30P 2238
54 1QVF 25 V 50S ribosomal protein L30P 2238
55 1NJI 24 X 50S ribosomal protein L30P 2238
56 1K73 24 X RIBOSOMAL PROTEIN L30 2238
57 1K9M 24 X RIBOSOMAL PROTEIN L30 2238
58 1KD1 24 X RIBOSOMAL PROTEIN L30 2238
59 3I55 24 W 50S ribosomal protein L30P 2238
60 1K8A 24 X RIBOSOMAL PROTEIN L30 2238
61 1Q86 25 X 50S ribosomal protein L30P 2238
62 1M1K 24 X RIBOSOMAL PROTEIN L30 2238
63 3G4S 24 W 50S ribosomal protein L30P 2238
64 3CCJ 23 W 50S ribosomal protein L30P 2238
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238
66 2QA4 25 W 50S ribosomal protein L30P 2238
67 1Q7Y 25 X 50S ribosomal protein L30P 2238
68 4ADX 33 W RPL30 145262