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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 492 Members. Sequence cutoff: 90% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 25 W 50S ribosomal protein L30P 272569  
2 1VQO 25 W 50S ribosomal protein L30P 2238  
3 1VQ8 25 W 50S ribosomal protein L30P 2238  
4 1S72 25 W 50S ribosomal protein L30P 2238  
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238  
6 1YHQ 25 W 50S ribosomal protein L30P 2238  
7 1VQP 25 W 50S ribosomal protein L30P 2238  
8 1VQM 25 W 50S ribosomal protein L30P 2238  
9 3CC2 23 W 50S ribosomal protein L30P 2238  
10 1VQL 25 W 50S ribosomal protein L30P 2238  
11 1VQK 25 W 50S ribosomal protein L30P 2238  
12 1VQN 26 W 50S ribosomal protein L30P 2238  
13 1YIJ 25 W 50S ribosomal protein L30P 2238  
14 1YI2 25 W 50S ribosomal protein L30P 2238  
15 1VQ9 25 W 50S ribosomal protein L30P 2238  
16 1VQ7 25 W 50S ribosomal protein L30P 2238  
17 3CCM 23 W 50S ribosomal protein L30P 272569  
18 1VQ5 25 W 50S ribosomal protein L30P 2238  
19 3CCJ 23 W 50S ribosomal protein L30P 272569  
20 3CC7 23 W 50S ribosomal protein L30P 2238  
21 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238  
22 3CCE 23 W 50S ribosomal protein L30P 272569  
23 3G6E 24 W 50S ribosomal protein L30P 2238  
24 3CPW 24 V 50S ribosomal protein L30P 2238  
25 3CCU 23 W 50S ribosomal protein L30P 272569  
26 1VQ6 26 W 50S ribosomal protein L30P 2238  
27 1M90 25 X RIBOSOMAL PROTEIN L30 2238  
28 3CCL 23 W 50S ribosomal protein L30P 272569  
29 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238  
30 1YJ9 25 W 50S ribosomal protein L30P 2238  
31 3CD6 23 W 50S ribosomal protein L30P 272569  
32 3CCV 23 W 50S ribosomal protein L30P 272569  
33 3CC4 23 W 50S ribosomal protein L30P 272569  
34 2OTL 24 W 50S ribosomal protein L30P 2238  
35 3G71 24 W 50S ribosomal protein L30P 2238  
36 1FFK 22 T RIBOSOMAL PROTEIN L30 2238  
37 1VQ4 25 W 50S ribosomal protein L30P 2238  
38 1YJN 25 W 50S ribosomal protein L30P 2238  
39 3CMA 23 W 50S ribosomal protein L30P 2238  
40 3CCS 23 W 50S ribosomal protein L30P 272569  
41 3CCQ 23 W 50S ribosomal protein L30P 272569  
42 3I56 23 W 50S ribosomal protein L30P 2238  
43 3CCR 23 W 50S ribosomal protein L30P 272569  
44 2OTJ 24 W 50S ribosomal protein L30P 2238  
45 1KQS 26 V RIBOSOMAL PROTEIN L30 2238  
46 3OW2 24 V 50S ribosomal protein L30P 2238  
47 3CXC 25 V RIBOSOMAL PROTEIN L30 2238  
48 1QVG 25 V 50S ribosomal protein L30P 2238  
49 3CME 23 W 50S ribosomal protein L30P 2238  
50 2QEX 24 W 50S ribosomal protein L30P 2238  
51 1KC8 24 X RIBOSOMAL PROTEIN L30 2238  
52 1N8R 24 X 50S ribosomal protein L30P 2238  
53 1Q81 25 X 50S ribosomal protein L30P 2238  
54 1Q82 25 X 50S ribosomal protein L30P 2238  
55 1QVF 25 V 50S ribosomal protein L30P 2238  
56 1NJI 24 X 50S ribosomal protein L30P 2238  
57 1K73 24 X RIBOSOMAL PROTEIN L30 2238  
58 1K9M 24 X RIBOSOMAL PROTEIN L30 2238  
59 1KD1 24 X RIBOSOMAL PROTEIN L30 2238  
60 3I55 24 W 50S ribosomal protein L30P 2238  
61 1K8A 24 X RIBOSOMAL PROTEIN L30 2238  
62 1Q86 25 X 50S ribosomal protein L30P 2238  
63 1M1K 24 X RIBOSOMAL PROTEIN L30 2238  
64 3G4S 24 W 50S ribosomal protein L30P 2238  
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238  
66 2QA4 25 W 50S ribosomal protein L30P 2238  
67 1Q7Y 25 X 50S ribosomal protein L30P 2238  
68 4ADX 33 W RPL30 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 663
95% 36 68 473
90% 36 68 495
70% 36 68 535
50% 36 121 239
40% 36 121 265
30% 41 335 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49337
95% 1 1 34599
90% 1 1 33069
70% 36 68 527
50% 36 119 243
40% 36 119 271
30% 36 119 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 440
70% 36 74 469
50% 36 74 515
40% 36 74 557
30% 40 327 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 438
70% 36 74 467
50% 36 76 494
40% 36 76 533
30% 36 78 518
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 70 573
40% 36 70 607
30% 36 70 608
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1711
95% 36 68 471
90% 36 68 493
70% 36 68 533
50% 36 68 607
40% 36 70 605
30% 36 71 588
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 477
90% 36 68 500
70% 36 68 540
50% 36 70 577
40% 36 70 612
30% 36 71 591
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 335
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 604
40% 36 68 639
30% 36 122 278
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 443
70% 36 74 473
50% 36 76 495
40% 36 78 515
30% 40 286 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 442
70% 36 74 472
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 453
90% 34 70 474
70% 34 70 510
50% 34 70 578
40% 34 70 613
30% 34 70 611
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 444
70% 36 74 474
50% 36 74 520
40% 36 74 560
30% 36 74 555
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 605
40% 36 70 604
30% 36 71 587
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 611
40% 36 68 644
30% 36 68 638
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52323
95% 3 5 11533
90% 3 5 11347
70% 3 5 10735
50% 3 5 9643
40% 3 5 8804
30% 3 5 7701
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58016
95% 1 1 40444
90% 1 1 38653
70% 3 21 2307
50% 7 30 1571
40% 7 77 413
30% 26 100 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 481
90% 36 68 504
70% 36 68 544
50% 36 69 595
40% 36 69 629
30% 36 69 626
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59310
95% 36 68 482
90% 36 68 505
70% 36 68 545
50% 36 121 240
40% 36 121 266
30% 36 121 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 68 610
40% 36 68 643
30% 36 120 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 468
90% 36 68 490
70% 36 68 530
50% 36 68 603
40% 36 120 268
30% 41 330 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1694
95% 36 68 465
90% 36 68 488
70% 36 68 526
50% 36 119 242
40% 36 121 264
30% 36 121 280
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43535
95% 36 74 407
90% 36 74 432
70% 36 74 463
50% 36 74 509
40% 36 125 252
30% 36 125 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7985
95% 36 74 411
90% 36 74 436
70% 36 74 466
50% 36 74 511
40% 36 76 531
30% 36 77 525
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 439
70% 36 74 468
50% 36 74 513
40% 36 126 251
30% 36 126 268
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1722
95% 3 21 2256
90% 36 68 497
70% 36 68 537
50% 51 95 309
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51339
95% 1 1 35718
90% 1 7 8203
70% 3 27 1696
50% 36 74 514
40% 36 79 503
30% 36 79 511
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 441
70% 36 74 470
50% 36 74 519
40% 37 77 524
30% 37 78 520
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.