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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 615 Members. Sequence cutoff: 40% Cluster size: 70 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 25 W 50S ribosomal protein L30P 272569  
2 1VQO 25 W 50S ribosomal protein L30P 2238  
3 1VQ8 25 W 50S ribosomal protein L30P 2238  
4 1S72 25 W 50S ribosomal protein L30P 2238  
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238  
6 1YHQ 25 W 50S ribosomal protein L30P 2238  
7 1VQP 25 W 50S ribosomal protein L30P 2238  
8 1VQM 25 W 50S ribosomal protein L30P 2238  
9 3CC2 23 W 50S ribosomal protein L30P 2238  
10 1VQL 25 W 50S ribosomal protein L30P 2238  
11 1VQK 25 W 50S ribosomal protein L30P 2238  
12 1VQN 26 W 50S ribosomal protein L30P 2238  
13 1YIJ 25 W 50S ribosomal protein L30P 2238  
14 1YI2 25 W 50S ribosomal protein L30P 2238  
15 1VQ9 25 W 50S ribosomal protein L30P 2238  
16 1VQ7 25 W 50S ribosomal protein L30P 2238  
17 3CCM 23 W 50S ribosomal protein L30P 2238  
18 1VQ5 25 W 50S ribosomal protein L30P 2238  
19 3CCJ 23 W 50S ribosomal protein L30P 2238  
20 3CC7 23 W 50S ribosomal protein L30P 2238  
21 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238  
22 3CCE 23 W 50S ribosomal protein L30P 2238  
23 3G6E 24 W 50S ribosomal protein L30P 2238  
24 3CPW 24 V 50S ribosomal protein L30P 2238  
25 3CCU 23 W 50S ribosomal protein L30P 2238  
26 1VQ6 26 W 50S ribosomal protein L30P 2238  
27 1M90 25 X RIBOSOMAL PROTEIN L30 2238  
28 3CCL 23 W 50S ribosomal protein L30P 2238  
29 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238  
30 1YJ9 25 W 50S ribosomal protein L30P 2238  
31 3CD6 23 W 50S ribosomal protein L30P 2238  
32 3CCV 23 W 50S ribosomal protein L30P 2238  
33 3CC4 23 W 50S ribosomal protein L30P 2238  
34 2OTL 24 W 50S ribosomal protein L30P 2238  
35 3G71 24 W 50S ribosomal protein L30P 2238  
36 1FFK 22 T RIBOSOMAL PROTEIN L30 2238  
37 1VQ4 25 W 50S ribosomal protein L30P 2238  
38 1YJN 25 W 50S ribosomal protein L30P 2238  
39 3CMA 23 W 50S ribosomal protein L30P 2238  
40 3CCS 23 W 50S ribosomal protein L30P 2238  
41 3CCQ 23 W 50S ribosomal protein L30P 2238  
42 3I56 23 W 50S ribosomal protein L30P 2238  
43 3CCR 23 W 50S ribosomal protein L30P 2238  
44 2OTJ 24 W 50S ribosomal protein L30P 2238  
45 1KQS 26 V RIBOSOMAL PROTEIN L30 2238  
46 3OW2 24 V 50S ribosomal protein L30P 2238  
47 3CXC 25 V RIBOSOMAL PROTEIN L30 2238  
48 1QVG 25 V 50S ribosomal protein L30P 2238  
49 3CME 23 W 50S ribosomal protein L30P 2238  
50 2QEX 24 W 50S ribosomal protein L30P 2238  
51 1KC8 24 X RIBOSOMAL PROTEIN L30 2238  
52 1N8R 24 X 50S ribosomal protein L30P 2238  
53 1Q81 25 X 50S ribosomal protein L30P 2238  
54 1Q82 25 X 50S ribosomal protein L30P 2238  
55 1QVF 25 V 50S ribosomal protein L30P 2238  
56 1NJI 24 X 50S ribosomal protein L30P 2238  
57 1K73 24 X RIBOSOMAL PROTEIN L30 2238  
58 1K9M 24 X RIBOSOMAL PROTEIN L30 2238  
59 1KD1 24 X RIBOSOMAL PROTEIN L30 2238  
60 3I55 24 W 50S ribosomal protein L30P 2238  
61 1K8A 24 X RIBOSOMAL PROTEIN L30 2238  
62 1Q86 25 X 50S ribosomal protein L30P 2238  
63 1M1K 24 X RIBOSOMAL PROTEIN L30 2238  
64 3G4S 24 W 50S ribosomal protein L30P 2238  
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238  
66 2QA4 25 W 50S ribosomal protein L30P 2238  
67 1Q7Y 25 X 50S ribosomal protein L30P 2238  
68 4V4N 66 AY 50S ribosomal protein L30P SEE REMARK 999 2190  
69 4V6U 31 BY 50S ribosomal protein L30P 186497  
70 4ADX 33 W RPL30 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 670
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 122 239
40% 36 122 263
30% 41 343 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49590
95% 1 1 34765
90% 1 1 33215
70% 36 68 531
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 74 523
40% 36 74 565
30% 40 335 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 76 499
40% 36 76 540
30% 36 78 524
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 477
90% 36 68 501
70% 36 68 541
50% 36 70 581
40% 36 70 617
30% 36 70 618
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1720
95% 36 68 473
90% 36 68 496
70% 36 68 536
50% 36 68 616
40% 36 70 616
30% 36 71 595
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 479
90% 36 68 503
70% 36 68 543
50% 36 70 584
40% 36 70 621
30% 36 71 598
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 471
90% 36 68 494
70% 36 68 534
50% 36 68 613
40% 36 68 648
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 76 500
40% 36 78 521
30% 40 293 68
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 419
90% 36 74 444
70% 36 74 476
50% 36 129 222
40% 36 129 248
30% 36 129 264
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 315
95% 34 70 456
90% 34 70 477
70% 34 70 513
50% 34 70 585
40% 34 70 622
30% 34 70 620
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 74 526
40% 36 74 567
30% 36 74 561
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 472
90% 36 68 495
70% 36 68 535
50% 36 68 614
40% 36 70 615
30% 36 71 594
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 481
90% 36 68 505
70% 36 68 545
50% 36 68 620
40% 36 68 653
30% 36 68 648
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52588
95% 3 5 11595
90% 3 5 11406
70% 3 5 10789
50% 3 5 9686
40% 3 5 8843
30% 3 5 7734
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58302
95% 1 1 40634
90% 1 1 38822
70% 3 21 2323
50% 7 30 1581
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 483
90% 36 68 507
70% 36 68 547
50% 36 69 603
40% 36 69 640
30% 36 69 635
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59601
95% 36 68 484
90% 36 68 508
70% 36 68 549
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 480
90% 36 68 504
70% 36 68 544
50% 36 68 619
40% 36 68 652
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 470
90% 36 68 493
70% 36 68 533
50% 36 68 611
40% 36 121 267
30% 41 338 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1703
95% 36 68 468
90% 36 68 491
70% 36 68 530
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43763
95% 36 74 409
90% 36 74 434
70% 36 74 466
50% 36 74 516
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8042
95% 36 74 413
90% 36 74 438
70% 36 74 469
50% 36 74 518
40% 36 76 537
30% 36 77 531
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 521
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1731
95% 3 21 2270
90% 36 68 500
70% 36 68 540
50% 51 95 311
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51602
95% 1 1 35892
90% 1 7 8253
70% 3 27 1707
50% 36 74 522
40% 36 79 508
30% 36 79 516
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 525
40% 37 77 531
30% 37 78 526
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.