Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 846
95 % 35 68 676 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 706
70 % 35 68 761
50 % 35 177 202
40 % 43 531 20
30 % 43 531 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60136
95 % 1 1 41940
90 % 1 1 39881
70 % 35 68 751
50 % 35 173 209
40 % 35 173 230
30 % 35 173 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 431
95 % 35 74 603 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 632
70 % 35 74 669
50 % 35 74 714
40 % 35 74 747
30 % 42 511 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 429
95 % 35 74 601 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 630
70 % 35 74 666
50 % 35 76 688
40 % 35 76 721
30 % 35 79 686
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 487
95 % 35 68 677 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 708
70 % 35 68 763
50 % 35 70 775
40 % 35 70 807
30 % 35 70 798
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2224
95 % 35 68 674 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 703
70 % 35 68 758
50 % 35 68 805
40 % 35 72 778
30 % 35 72 770
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 489
95 % 35 68 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 712
70 % 35 68 767
50 % 35 70 776
40 % 35 70 808
30 % 35 71 783
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 504
95 % 35 68 672 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 701
70 % 35 68 755
50 % 35 68 802
40 % 35 68 837
30 % 35 176 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 436
95 % 35 74 608 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 637
70 % 35 74 677
50 % 35 76 692
40 % 35 78 701
30 % 42 417 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 435
95 % 35 74 607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 636
70 % 35 74 675
50 % 35 181 200
40 % 35 181 219
30 % 35 181 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 464
95 % 33 70 653 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 33 70 679
70 % 33 70 733
50 % 33 70 779
40 % 33 70 812
30 % 33 70 802
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 437
95 % 35 74 609
90 % 35 74 638
70 % 35 74 678
50 % 35 74 722
40 % 42 381 58
30 % 42 407 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 485
95 % 35 68 673 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 702
70 % 35 68 756
50 % 35 68 803
40 % 35 70 804
30 % 35 71 781
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 491
95 % 35 68 683 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 714
70 % 35 68 769
50 % 35 68 811
40 % 35 68 844
30 % 35 68 831
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63501
95 % 3 5 14264 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 13993
70 % 3 5 13129
50 % 3 5 11685
40 % 3 5 10598
30 % 3 5 9190
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69819
95 % 1 1 48393
90 % 1 1 45966
70 % 3 21 2915
50 % 7 30 1938
40 % 7 130 299
30 % 26 153 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 493
95 % 35 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 717
70 % 35 68 772
50 % 35 69 792
40 % 35 69 826
30 % 35 69 816
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71234
95 % 35 68 687 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 718
70 % 35 68 773
50 % 35 174 205
40 % 35 174 229
30 % 35 174 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 490
95 % 35 68 682 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 713
70 % 35 68 768
50 % 35 68 810
40 % 35 68 843
30 % 35 170 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 484
95 % 35 68 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 699
70 % 35 68 753
50 % 35 68 801
40 % 35 175 224
30 % 43 522 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2207
95 % 35 68 669 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 697
70 % 35 68 750
50 % 35 172 208
40 % 35 174 228
30 % 35 174 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53317
95 % 35 74 593 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 624
70 % 35 74 662
50 % 35 74 708
40 % 35 181 217
30 % 35 181 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10078
95 % 35 74 597 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 628
70 % 35 74 664
50 % 35 74 710
40 % 35 76 719
30 % 36 78 693
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 430
95 % 35 74 602 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 631
70 % 35 74 667
50 % 35 74 712
40 % 36 181 218
30 % 36 181 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2238
95 % 3 21 2881 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 707
70 % 35 68 762
50 % 50 105 334
40 % 57 123 282
30 % 57 125 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62404
95 % 1 1 43202
90 % 1 7 10170
70 % 3 27 2169
50 % 35 74 713
40 % 35 79 691
30 % 35 79 688
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 432
95 % 35 74 604 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 633
70 % 35 74 672
50 % 35 74 718
40 % 36 77 714
30 % 36 78 697

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 25 W 50S ribosomal protein L30P 2238
2 1VQO 25 W 50S ribosomal protein L30P 2238
3 1VQ8 25 W 50S ribosomal protein L30P 2238
4 1S72 25 W 50S ribosomal protein L30P 2238
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238
6 1YHQ 25 W 50S ribosomal protein L30P 2238
7 1VQP 25 W 50S ribosomal protein L30P 2238
8 1VQM 25 W 50S ribosomal protein L30P 2238
9 3CC2 23 W 50S ribosomal protein L30P 2238
10 1VQL 25 W 50S ribosomal protein L30P 2238
11 1VQK 25 W 50S ribosomal protein L30P 2238
12 1VQN 26 W 50S ribosomal protein L30P 2238
13 1YIJ 25 W 50S ribosomal protein L30P 2238
14 1YI2 25 W 50S ribosomal protein L30P 2238
15 1VQ9 25 W 50S ribosomal protein L30P 2238
16 1VQ7 25 W 50S ribosomal protein L30P 2238
17 3CCM 23 W 50S ribosomal protein L30P 2238
18 1VQ5 25 W 50S ribosomal protein L30P 2238
19 3CC7 23 W 50S ribosomal protein L30P 2238
20 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238
21 3CCE 23 W 50S ribosomal protein L30P 2238
22 3G6E 24 W 50S ribosomal protein L30P 2238
23 3CPW 24 V 50S ribosomal protein L30P 2238
24 3CCU 23 W 50S ribosomal protein L30P 2238
25 1VQ6 26 W 50S ribosomal protein L30P 2238
26 1M90 25 X RIBOSOMAL PROTEIN L30 2238
27 3CCL 23 W 50S ribosomal protein L30P 2238
28 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238
29 1YJ9 25 W 50S ribosomal protein L30P 2238
30 3CD6 23 W 50S ribosomal protein L30P 2238
31 3CCV 23 W 50S ribosomal protein L30P 2238
32 3CC4 23 W 50S ribosomal protein L30P 2238
33 2OTL 24 W 50S ribosomal protein L30P 2238
34 3G71 24 W 50S ribosomal protein L30P 2238
35 1FFK 22 T RIBOSOMAL PROTEIN L30 2238
36 1VQ4 25 W 50S ribosomal protein L30P 2238
37 1YJN 25 W 50S ribosomal protein L30P 2238
38 3CMA 23 W 50S ribosomal protein L30P 2238
39 3CCS 23 W 50S ribosomal protein L30P 2238
40 3CCQ 23 W 50S ribosomal protein L30P 2238
41 3I56 23 W 50S ribosomal protein L30P 2238
42 3CCR 23 W 50S ribosomal protein L30P 2238
43 2OTJ 24 W 50S ribosomal protein L30P 2238
44 1KQS 26 V RIBOSOMAL PROTEIN L30 2238
45 3OW2 24 V 50S ribosomal protein L30P 2238
46 3CXC 25 V RIBOSOMAL PROTEIN L30 2238
47 1QVG 25 V 50S ribosomal protein L30P 2238
48 3CME 23 W 50S ribosomal protein L30P 2238
49 2QEX 24 W 50S ribosomal protein L30P 2238
50 1KC8 24 X RIBOSOMAL PROTEIN L30 2238
51 1N8R 24 X 50S ribosomal protein L30P 2238
52 1Q81 25 X 50S ribosomal protein L30P 2238
53 1Q82 25 X 50S ribosomal protein L30P 2238
54 1QVF 25 V 50S ribosomal protein L30P 2238
55 1NJI 24 X 50S ribosomal protein L30P 2238
56 1K73 24 X RIBOSOMAL PROTEIN L30 2238
57 1K9M 24 X RIBOSOMAL PROTEIN L30 2238
58 1KD1 24 X RIBOSOMAL PROTEIN L30 2238
59 3I55 24 W 50S ribosomal protein L30P 2238
60 1K8A 24 X RIBOSOMAL PROTEIN L30 2238
61 1Q86 25 X 50S ribosomal protein L30P 2238
62 1M1K 24 X RIBOSOMAL PROTEIN L30 2238
63 3G4S 24 W 50S ribosomal protein L30P 2238
64 3CCJ 23 W 50S ribosomal protein L30P 2238
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238
66 2QA4 25 W 50S ribosomal protein L30P 2238
67 1Q7Y 25 X 50S ribosomal protein L30P 2238
68 4V4N 66 AY 50S ribosomal protein L30P SEE REMARK 999 2190
69 4V6U 31 BY 50S ribosomal protein L30P 2261
70 4ADX 33 W RPL30 145262