Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 863
95 % 35 68 697
90 % 35 68 727
70 % 35 68 779
50 % 35 180 201
40 % 43 537 20
30 % 43 537 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60907
95 % 1 1 42489
90 % 1 1 40386
70 % 35 68 770
50 % 35 176 205
40 % 35 176 227
30 % 35 176 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 446
95 % 35 74 618
90 % 35 74 646
70 % 35 74 689
50 % 35 74 741
40 % 35 74 775
30 % 42 517 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 444
95 % 35 74 616
90 % 35 74 644
70 % 35 74 686
50 % 35 76 716
40 % 35 76 751
30 % 35 79 713
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 513
95 % 35 68 699
90 % 35 68 730
70 % 35 68 782
50 % 35 70 793
40 % 35 70 830
30 % 35 70 817
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2256
95 % 35 68 696
90 % 35 68 725
70 % 35 68 777
50 % 35 68 821
40 % 35 72 803
30 % 35 72 793
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 514
95 % 35 68 701
90 % 35 68 732
70 % 35 68 784
50 % 35 70 794
40 % 35 70 831
30 % 35 71 806
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 523
95 % 35 68 694
90 % 35 68 723
70 % 35 68 774
50 % 35 68 818
40 % 35 68 854
30 % 35 179 230
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 451
95 % 35 74 622
90 % 35 74 650
70 % 35 74 696
50 % 35 76 721
40 % 35 78 729
30 % 42 420 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 450
95 % 35 74 621
90 % 35 74 649
70 % 35 74 694
50 % 35 183 199
40 % 35 184 217
30 % 35 184 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 483
95 % 33 70 668
90 % 33 70 693
70 % 33 70 746
50 % 33 70 795
40 % 33 70 832
30 % 33 70 819
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 452
95 % 35 74 623
90 % 35 74 651
70 % 35 74 697
50 % 35 74 746
40 % 42 384 58
30 % 42 410 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 510
95 % 35 68 695
90 % 35 68 724
70 % 35 68 775
50 % 35 68 819
40 % 35 70 828
30 % 35 71 804
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 516
95 % 35 68 703
90 % 35 68 734
70 % 35 68 786
50 % 35 68 826
40 % 35 68 858
30 % 35 68 842
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64339
95 % 3 5 14477
90 % 3 5 14204
70 % 3 5 13347
50 % 3 5 11870
40 % 3 5 10769
30 % 3 5 9344
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70754
95 % 1 1 49075
90 % 1 1 46601
70 % 3 21 2952
50 % 7 30 1977
40 % 7 134 287
30 % 26 157 261
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 517
95 % 35 68 704
90 % 35 68 735
70 % 35 68 787
50 % 35 69 808
40 % 35 69 843
30 % 35 69 832
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72191
95 % 35 68 705
90 % 35 68 736
70 % 35 68 788
50 % 35 177 203
40 % 35 177 225
30 % 35 177 235
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 515
95 % 35 68 702
90 % 35 68 733
70 % 35 68 785
50 % 35 68 825
40 % 35 68 857
30 % 35 173 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 509
95 % 35 68 693
90 % 35 68 721
70 % 35 68 772
50 % 35 68 817
40 % 35 178 222
30 % 43 528 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2239
95 % 35 68 691
90 % 35 68 719
70 % 35 68 769
50 % 35 175 204
40 % 35 177 224
30 % 35 177 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53997
95 % 35 74 608
90 % 35 74 638
70 % 35 74 682
50 % 35 74 734
40 % 35 184 215
30 % 35 184 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10221
95 % 35 74 612
90 % 35 74 642
70 % 35 74 684
50 % 35 74 736
40 % 35 76 749
30 % 36 78 721
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 445
95 % 35 74 617
90 % 35 74 645
70 % 35 74 687
50 % 35 74 739
40 % 36 184 216
30 % 36 184 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2269
95 % 3 21 2913
90 % 35 68 729
70 % 35 68 781
50 % 50 105 349
40 % 57 124 285
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63212
95 % 1 1 43778
90 % 1 7 10332
70 % 3 27 2207
50 % 35 74 740
40 % 35 79 720
30 % 35 79 715
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 448
95 % 35 74 619
90 % 35 74 647
70 % 35 74 692
50 % 35 74 745
40 % 36 77 740
30 % 36 78 725

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 25 W 50S ribosomal protein L30P 2238
2 1VQO 25 W 50S ribosomal protein L30P 2238
3 1VQ8 25 W 50S ribosomal protein L30P 2238
4 1S72 25 W 50S ribosomal protein L30P 2238
5 1JJ2 24 V RIBOSOMAL PROTEIN L30 2238
6 1YHQ 25 W 50S ribosomal protein L30P 2238
7 1VQP 25 W 50S ribosomal protein L30P 2238
8 1VQM 25 W 50S ribosomal protein L30P 2238
9 3CC2 23 W 50S ribosomal protein L30P 2238
10 1VQL 25 W 50S ribosomal protein L30P 2238
11 1VQK 25 W 50S ribosomal protein L30P 2238
12 1VQN 26 W 50S ribosomal protein L30P 2238
13 1YIJ 25 W 50S ribosomal protein L30P 2238
14 1YI2 25 W 50S ribosomal protein L30P 2238
15 1VQ9 25 W 50S ribosomal protein L30P 2238
16 1VQ7 25 W 50S ribosomal protein L30P 2238
17 3CCM 23 W 50S ribosomal protein L30P 2238
18 1VQ5 25 W 50S ribosomal protein L30P 2238
19 3CC7 23 W 50S ribosomal protein L30P 2238
20 1YIT 29 W 50S RIBOSOMAL PROTEIN L30P 2238
21 3CCE 23 W 50S ribosomal protein L30P 2238
22 3G6E 24 W 50S ribosomal protein L30P 2238
23 3CPW 24 V 50S ribosomal protein L30P 2238
24 3CCU 23 W 50S ribosomal protein L30P 2238
25 1VQ6 26 W 50S ribosomal protein L30P 2238
26 1M90 25 X RIBOSOMAL PROTEIN L30 2238
27 3CCL 23 W 50S ribosomal protein L30P 2238
28 1YJW 29 W 50S RIBOSOMAL PROTEIN L30P 2238
29 1YJ9 25 W 50S ribosomal protein L30P 2238
30 3CD6 23 W 50S ribosomal protein L30P 2238
31 3CCV 23 W 50S ribosomal protein L30P 2238
32 3CC4 23 W 50S ribosomal protein L30P 2238
33 2OTL 24 W 50S ribosomal protein L30P 2238
34 3G71 24 W 50S ribosomal protein L30P 2238
35 1FFK 22 T RIBOSOMAL PROTEIN L30 2238
36 1VQ4 25 W 50S ribosomal protein L30P 2238
37 1YJN 25 W 50S ribosomal protein L30P 2238
38 3CMA 23 W 50S ribosomal protein L30P 2238
39 3CCS 23 W 50S ribosomal protein L30P 2238
40 3CCQ 23 W 50S ribosomal protein L30P 2238
41 3I56 23 W 50S ribosomal protein L30P 2238
42 3CCR 23 W 50S ribosomal protein L30P 2238
43 2OTJ 24 W 50S ribosomal protein L30P 2238
44 1KQS 26 V RIBOSOMAL PROTEIN L30 2238
45 3OW2 24 V 50S ribosomal protein L30P 2238
46 3CXC 25 V RIBOSOMAL PROTEIN L30 2238
47 1QVG 25 V 50S ribosomal protein L30P 2238
48 3CME 23 W 50S ribosomal protein L30P 2238
49 2QEX 24 W 50S ribosomal protein L30P 2238
50 1KC8 24 X RIBOSOMAL PROTEIN L30 2238
51 1N8R 24 X 50S ribosomal protein L30P 2238
52 1Q81 25 X 50S ribosomal protein L30P 2238
53 1Q82 25 X 50S ribosomal protein L30P 2238
54 1QVF 25 V 50S ribosomal protein L30P 2238
55 1NJI 24 X 50S ribosomal protein L30P 2238
56 1K73 24 X RIBOSOMAL PROTEIN L30 2238
57 1K9M 24 X RIBOSOMAL PROTEIN L30 2238
58 1KD1 24 X RIBOSOMAL PROTEIN L30 2238
59 3I55 24 W 50S ribosomal protein L30P 2238
60 1K8A 24 X RIBOSOMAL PROTEIN L30 2238
61 1Q86 25 X 50S ribosomal protein L30P 2238
62 1M1K 24 X RIBOSOMAL PROTEIN L30 2238
63 3G4S 24 W 50S ribosomal protein L30P 2238
64 3CCJ 23 W 50S ribosomal protein L30P 2238
65 1W2B 27 V 50S RIBOSOMAL PROTEIN L30P 2238
66 2QA4 25 W 50S ribosomal protein L30P 2238
67 1Q7Y 25 X 50S ribosomal protein L30P 2238
68 4V4N 66 AY 50S ribosomal protein L30P SEE REMARK 999 2190
69 4V6U 31 BY 50S ribosomal protein L30P 2261
70 4ADX 33 W RPL30 145262