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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 399 Members. Sequence cutoff: 95% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 24 V 50S ribosomal protein L29P 272569  
2 1VQO 24 V 50S ribosomal protein L29P 2238  
3 1VQ8 24 V 50S ribosomal protein L29P 2238  
4 1S72 24 V 50S ribosomal protein L29P 2238  
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238  
6 1YHQ 24 V 50S ribosomal protein L29P 2238  
7 1VQP 24 V 50S ribosomal protein L29P 2238  
8 1VQM 24 V 50S ribosomal protein L29P 2238  
9 3CC2 22 V 50S ribosomal protein L29P 2238  
10 1VQL 24 V 50S ribosomal protein L29P 2238  
11 1VQK 24 V 50S ribosomal protein L29P 2238  
12 1VQN 25 V 50S ribosomal protein L29P 2238  
13 1YIJ 24 V 50S ribosomal protein L29P 2238  
14 1YI2 24 V 50S ribosomal protein L29P 2238  
15 1VQ9 24 V 50S ribosomal protein L29P 2238  
16 1VQ7 24 V 50S ribosomal protein L29P 2238  
17 3CCM 22 V 50S ribosomal protein L29P 2238  
18 1VQ5 24 V 50S ribosomal protein L29P 2238  
19 3CCJ 22 V 50S ribosomal protein L29P 2238  
20 3CC7 22 V 50S ribosomal protein L29P 2238  
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
22 3CCE 22 V 50S ribosomal protein L29P 2238  
23 3G6E 23 V 50S ribosomal protein L29P 2238  
24 3CPW 23 U 50S ribosomal protein L29P 2238  
25 3CCU 22 V 50S ribosomal protein L29P 2238  
26 1VQ6 25 V 50S ribosomal protein L29P 2238  
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238  
28 3CCL 22 V 50S ribosomal protein L29P 2238  
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
30 1YJ9 24 V 50S ribosomal protein L29P 2238  
31 3CD6 22 V 50S ribosomal protein L29P 2238  
32 3CCV 22 V 50S ribosomal protein L29P 2238  
33 3CC4 22 V 50S ribosomal protein L29P 2238  
34 2OTL 23 V 50S ribosomal protein L29P 2238  
35 3G71 23 V 50S ribosomal protein L29P 2238  
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238  
37 1VQ4 24 V 50S ribosomal protein L29P 2238  
38 1YJN 24 V 50S ribosomal protein L29P 2238  
39 3CMA 22 V 50S ribosomal protein L29P 2238  
40 3CCS 22 V 50S ribosomal protein L29P 2238  
41 3CCQ 22 V 50S ribosomal protein L29P 2238  
42 3I56 22 V 50S ribosomal protein L29P 2238  
43 3CCR 22 V 50S ribosomal protein L29P 2238  
44 2OTJ 23 V 50S ribosomal protein L29P 2238  
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238  
46 3OW2 23 U 50S ribosomal protein L29P 2238  
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238  
48 1QVG 24 U 50S ribosomal protein L29P 2238  
49 3CME 22 V 50S ribosomal protein L29P 2238  
50 2QEX 23 V 50S ribosomal protein L29P 2238  
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238  
52 1N8R 23 W 50S ribosomal protein L29P 2238  
53 1Q81 24 W 50S ribosomal protein L29P 2238  
54 1Q82 24 W 50S ribosomal protein L29P 2238  
55 1QVF 24 U 50S ribosomal protein L29P 2238  
56 1NJI 23 W 50S ribosomal protein L29P 2238  
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238  
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238  
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238  
60 3I55 23 V 50S ribosomal protein L29P 2238  
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238  
62 1Q86 24 W 50S ribosomal protein L29P 2238  
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238  
64 3G4S 23 V 50S ribosomal protein L29P 2238  
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238  
66 2QA4 24 V 50S ribosomal protein L29P 2238  
67 1Q7Y 24 W 50S ribosomal protein L29P 2238  
68 1YL3 22 W 50S ribosomal protein L29 300852  
69 2B66 22 2 50S ribosomal protein L29 274  
70 2B9N 22 2 50S ribosomal protein L29 274  
71 2B9P 22 2 50S ribosomal protein L29 274  
72 4ADX 32 V RPL29 187420  
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562  
74 1GIY 22 W 50S RIBOSOMAL PROTEIN L29 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 547
95% 36 68 449
90% 36 68 471
70% 36 68 502
50% 36 105 320
40% 36 105 344
30% 37 402 56
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46577
95% 1 1 32715
90% 1 1 31302
70% 36 68 495
50% 36 103 330
40% 36 103 353
30% 36 103 364
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 276
95% 36 74 395
90% 36 74 419
70% 36 74 444
50% 36 74 493
40% 36 74 523
30% 36 394 62
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 274
95% 36 74 393
90% 36 74 417
70% 36 74 442
50% 36 76 476
40% 36 76 504
30% 36 78 499
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 312
95% 36 68 451
90% 36 68 474
70% 36 68 505
50% 36 70 531
40% 36 70 557
30% 36 70 562
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1531
95% 36 68 447
90% 36 68 469
70% 36 68 500
50% 36 68 556
40% 36 70 556
30% 36 71 547
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 453
90% 36 68 476
70% 36 68 507
50% 36 70 533
40% 36 70 560
30% 36 71 549
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 326
95% 36 68 445
90% 36 68 467
70% 36 68 498
50% 36 68 553
40% 36 68 584
30% 36 106 349
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 422
70% 36 74 447
50% 36 76 477
40% 36 78 486
30% 36 369 73
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 421
70% 36 74 446
50% 36 112 286
40% 36 112 310
30% 36 112 327
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 302
95% 34 70 429
90% 34 70 449
70% 34 70 478
50% 34 70 534
40% 34 70 561
30% 34 70 563
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 399
90% 36 74 423
70% 36 74 448
50% 36 74 495
40% 36 74 525
30% 36 74 527
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 310
95% 36 68 446
90% 36 68 468
70% 36 68 499
50% 36 68 554
40% 36 70 555
30% 36 71 546
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 317
95% 36 68 455
90% 36 68 478
70% 36 68 509
50% 36 68 560
40% 36 68 589
30% 36 68 585
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49468
95% 3 5 10959
90% 3 5 10788
70% 3 5 10213
50% 3 5 9173
40% 3 5 8374
30% 3 5 7360
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54982
95% 1 1 38385
90% 1 1 36737
70% 3 21 2125
50% 7 30 1448
40% 7 58 696
30% 26 81 477
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 457
90% 36 68 480
70% 36 68 511
50% 36 69 546
40% 36 69 576
30% 36 69 576
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56239
95% 36 68 458
90% 36 68 481
70% 36 68 512
50% 36 105 323
40% 36 105 346
30% 36 105 357
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 454
90% 36 68 477
70% 36 68 508
50% 36 68 559
40% 36 68 588
30% 36 104 361
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 309
95% 36 68 444
90% 36 68 466
70% 36 68 497
50% 36 68 552
40% 36 104 349
30% 37 397 61
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1516
95% 35 67 462
90% 35 67 485
70% 35 67 518
50% 35 102 332
40% 35 104 347
30% 35 104 358
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41062
95% 36 74 388
90% 36 74 413
70% 36 74 439
50% 36 74 488
40% 36 109 318
30% 36 109 332
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7493
95% 36 74 391
90% 36 74 415
70% 36 74 441
50% 36 74 490
40% 36 76 503
30% 36 77 505
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 275
95% 36 74 394
90% 36 74 418
70% 36 74 443
50% 36 74 491
40% 36 109 321
30% 36 109 335
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1542
95% 3 21 2053
90% 36 68 473
70% 36 68 504
50% 51 97 279
40% 57 106 271
30% 57 108 290
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48514
95% 1 1 33800
90% 1 7 7789
70% 3 27 1544
50% 36 74 492
40% 36 78 483
30% 36 78 501
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 277
95% 36 74 396
90% 36 74 420
70% 36 74 445
50% 36 74 494
40% 37 77 495
30% 37 78 502
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.