Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 660
95 % 35 68 800 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 831
70 % 35 68 879
50 % 35 224 205
40 % 45 665 24
30 % 45 665 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51080
95 % 1 1 42301
90 % 1 1 40258
70 % 35 68 880
50 % 35 222 206
40 % 35 222 224
30 % 35 222 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 596
95 % 35 74 731 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 759
70 % 35 74 801
50 % 35 74 859
40 % 35 220 225
30 % 35 220 242
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 587
95 % 35 74 718 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 746
70 % 35 74 789
50 % 35 76 820
40 % 35 76 852
30 % 35 79 820
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 671
95 % 35 68 815 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 846
70 % 35 68 898
50 % 35 70 901
40 % 35 70 929
30 % 35 70 917
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 3053
95 % 35 68 819 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 850
70 % 35 68 901
50 % 35 68 946
40 % 35 72 903
30 % 35 72 904
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 665
95 % 35 68 806 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 837
70 % 35 68 888
50 % 35 70 911
40 % 35 70 943
30 % 35 71 911
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 682
95 % 35 68 804 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 835
70 % 35 68 886
50 % 35 68 935
40 % 35 68 963
30 % 35 220 241
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 599
95 % 35 74 732 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 762
70 % 35 74 807
50 % 35 77 810
40 % 44 505 38
30 % 44 505 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 593
95 % 35 74 724 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 752
70 % 35 74 795
50 % 35 229 203
40 % 35 230 211
30 % 35 230 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 630
95 % 33 70 773 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 803
70 % 33 70 847
50 % 33 70 902
40 % 33 70 930
30 % 33 70 918
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 594
95 % 35 74 725 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 753
70 % 35 74 796
50 % 35 74 853
40 % 44 459 59
30 % 44 485 72
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 664
95 % 35 68 805 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 836
70 % 35 68 887
50 % 35 68 936
40 % 35 70 934
30 % 35 71 910
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 661
95 % 35 68 816 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 847
70 % 35 68 899
50 % 35 68 944
40 % 35 68 970
30 % 35 70 926
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61703
95 % 3 5 16108 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15775
70 % 3 5 14680
50 % 3 5 12972
40 % 3 5 11607
30 % 3 5 9878
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2952
95 % 3 21 3296 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3355
70 % 3 21 3298
50 % 7 30 2240
40 % 7 172 275
30 % 9 176 282
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 672
95 % 35 68 801 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 832
70 % 35 68 881
50 % 35 69 912
40 % 35 69 945
30 % 35 69 931
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58092
95 % 35 68 808 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 839
70 % 35 68 891
50 % 35 215 208
40 % 35 215 229
30 % 35 215 244
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 658
95 % 35 68 798 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 829
70 % 35 68 877
50 % 35 68 928
40 % 35 210 234
30 % 35 210 249
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 668
95 % 35 68 812 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 843
70 % 35 68 875
50 % 35 68 941
40 % 35 221 222
30 % 45 652 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2387
95 % 35 68 814 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 845
70 % 35 68 896
50 % 35 213 209
40 % 35 213 230
30 % 35 213 245
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64155
95 % 35 74 728 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 756
70 % 35 74 798
50 % 35 74 858
40 % 35 229 212
30 % 35 229 231
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 947
95 % 35 74 719 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 747
70 % 35 74 790
50 % 35 74 845
40 % 35 76 847
30 % 36 78 831
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 595
95 % 35 74 726 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 755
70 % 35 74 797
50 % 35 74 857
40 % 36 222 219
30 % 36 222 238
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2967
95 % 3 21 3308 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 828
70 % 35 68 876
50 % 51 108 418
40 % 58 133 348
30 % 72 300 160
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64152
95 % 1 1 52247
90 % 1 7 11777
70 % 3 27 2553
50 % 35 74 851
40 % 35 79 812
30 % 35 79 821
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 592
95 % 35 74 716 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 744
70 % 35 74 787
50 % 35 74 850
40 % 36 78 833
30 % 36 78 833

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CC7 22 V 50S ribosomal protein L29P 2238
20 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
21 3CCE 22 V 50S ribosomal protein L29P 2238
22 3G6E 23 V 50S ribosomal protein L29P 2238
23 3CPW 23 U 50S ribosomal protein L29P 2238
24 3CCU 22 V 50S ribosomal protein L29P 2238
25 1VQ6 25 V 50S ribosomal protein L29P 2238
26 1M90 24 W RIBOSOMAL PROTEIN L29 2238
27 3CCL 22 V 50S ribosomal protein L29P 2238
28 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
29 1YJ9 24 V 50S ribosomal protein L29P 2238
30 3CD6 22 V 50S ribosomal protein L29P 2238
31 3CCV 22 V 50S ribosomal protein L29P 2238
32 3CC4 22 V 50S ribosomal protein L29P 2238
33 2OTL 23 V 50S ribosomal protein L29P 2238
34 3G71 23 V 50S ribosomal protein L29P 2238
35 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
36 1VQ4 24 V 50S ribosomal protein L29P 2238
37 1YJN 24 V 50S ribosomal protein L29P 2238
38 3CMA 22 V 50S ribosomal protein L29P 2238
39 3CCS 22 V 50S ribosomal protein L29P 2238
40 3CCQ 22 V 50S ribosomal protein L29P 2238
41 3I56 22 V 50S ribosomal protein L29P 2238
42 3CCR 22 V 50S ribosomal protein L29P 2238
43 2OTJ 23 V 50S ribosomal protein L29P 2238
44 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
45 3OW2 23 U 50S ribosomal protein L29P 2238
46 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
47 1QVG 24 U 50S ribosomal protein L29P 2238
48 3CME 22 V 50S ribosomal protein L29P 2238
49 2QEX 23 V 50S ribosomal protein L29P 2238
50 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
51 1N8R 23 W 50S ribosomal protein L29P 2238
52 1Q81 24 W 50S ribosomal protein L29P 2238
53 1Q82 24 W 50S ribosomal protein L29P 2238
54 1QVF 24 U 50S ribosomal protein L29P 2238
55 1NJI 23 W 50S ribosomal protein L29P 2238
56 1K73 23 W RIBOSOMAL PROTEIN L29 2238
57 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
58 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
59 3I55 23 V 50S ribosomal protein L29P 2238
60 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
61 1Q86 24 W 50S ribosomal protein L29P 2238
62 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
63 3G4S 23 V 50S ribosomal protein L29P 2238
64 3CCJ 22 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274