Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 891
95 % 35 68 715 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 747
70 % 35 68 794
50 % 35 185 198
40 % 43 552 20
30 % 43 552 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62199
95 % 1 1 43416
90 % 1 1 41220
70 % 35 68 786
50 % 35 181 206
40 % 35 181 224
30 % 35 181 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 457
95 % 35 74 634 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 662
70 % 35 74 707
50 % 35 74 758
40 % 35 74 794
30 % 42 532 39
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 455
95 % 35 74 632 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 660
70 % 35 74 704
50 % 35 76 732
40 % 35 76 766
30 % 35 79 727
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 526
95 % 35 68 717 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 750
70 % 35 68 797
50 % 35 70 807
40 % 35 70 847
30 % 35 70 829
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2335
95 % 35 68 713 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 746
70 % 35 68 793
50 % 35 68 838
40 % 35 72 820
30 % 35 72 807
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 527
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 799
50 % 35 70 809
40 % 35 70 848
30 % 35 71 817
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 539
95 % 35 68 711 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 744
70 % 35 68 790
50 % 35 68 835
40 % 35 68 871
30 % 35 184 227
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 462
95 % 35 74 638 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 666
70 % 35 74 712
50 % 35 76 736
40 % 35 78 748
30 % 42 430 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 461
95 % 35 74 637 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 665
70 % 35 74 711
50 % 35 188 195
40 % 35 189 215
30 % 35 189 223
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 495
95 % 33 70 688 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 717
70 % 33 70 762
50 % 33 70 810
40 % 33 70 849
30 % 33 70 831
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 463
95 % 35 74 639 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 667
70 % 35 74 713
50 % 35 74 762
40 % 42 391 53
30 % 42 417 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 523
95 % 35 68 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 745
70 % 35 68 791
50 % 35 68 836
40 % 35 70 846
30 % 35 71 815
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 721 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 754
70 % 35 68 801
50 % 35 68 843
40 % 35 68 875
30 % 35 68 856
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65702
95 % 3 5 14782 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14509
70 % 3 5 13625
50 % 3 5 12099
40 % 3 5 10968
30 % 3 5 9524
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72229
95 % 1 1 50109
90 % 1 1 47525
70 % 3 21 3025
50 % 7 30 2020
40 % 7 139 279
30 % 26 162 254
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 530
95 % 35 68 722 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 802
50 % 35 69 823
40 % 35 69 859
30 % 35 69 844
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73686
95 % 35 68 723 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 35 182 203
40 % 35 182 223
30 % 35 182 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 528
95 % 35 68 720 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 753
70 % 35 68 800
50 % 35 68 842
40 % 35 68 874
30 % 35 178 236
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 522
95 % 35 68 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 742
70 % 35 68 788
50 % 35 68 834
40 % 35 183 221
30 % 43 543 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2317
95 % 35 68 708 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 740
70 % 35 68 785
50 % 35 180 205
40 % 35 182 222
30 % 35 182 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55142
95 % 35 74 623 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 654
70 % 35 74 699
50 % 35 74 749
40 % 35 189 213
30 % 35 189 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10446
95 % 35 74 626 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 657
70 % 35 74 701
50 % 35 74 751
40 % 35 76 762
30 % 36 78 745
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 456
95 % 35 74 633 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 661
70 % 35 74 705
50 % 35 74 756
40 % 36 189 214
30 % 36 189 222
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2348
95 % 3 21 2995 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 749
70 % 35 68 796
50 % 50 105 379
40 % 57 126 287
30 % 57 128 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64543
95 % 1 1 44727
90 % 1 7 10539
70 % 3 27 2250
50 % 35 74 757
40 % 35 79 733
30 % 35 79 731
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 459
95 % 35 74 635
90 % 35 74 663
70 % 35 74 709
50 % 35 74 761
40 % 36 77 756
30 % 36 78 749

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CC7 22 V 50S ribosomal protein L29P 2238
20 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
21 3CCE 22 V 50S ribosomal protein L29P 2238
22 3G6E 23 V 50S ribosomal protein L29P 2238
23 3CPW 23 U 50S ribosomal protein L29P 2238
24 3CCU 22 V 50S ribosomal protein L29P 2238
25 1VQ6 25 V 50S ribosomal protein L29P 2238
26 1M90 24 W RIBOSOMAL PROTEIN L29 2238
27 3CCL 22 V 50S ribosomal protein L29P 2238
28 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
29 1YJ9 24 V 50S ribosomal protein L29P 2238
30 3CD6 22 V 50S ribosomal protein L29P 2238
31 3CCV 22 V 50S ribosomal protein L29P 2238
32 3CC4 22 V 50S ribosomal protein L29P 2238
33 2OTL 23 V 50S ribosomal protein L29P 2238
34 3G71 23 V 50S ribosomal protein L29P 2238
35 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
36 1VQ4 24 V 50S ribosomal protein L29P 2238
37 1YJN 24 V 50S ribosomal protein L29P 2238
38 3CMA 22 V 50S ribosomal protein L29P 2238
39 3CCS 22 V 50S ribosomal protein L29P 2238
40 3CCQ 22 V 50S ribosomal protein L29P 2238
41 3I56 22 V 50S ribosomal protein L29P 2238
42 3CCR 22 V 50S ribosomal protein L29P 2238
43 2OTJ 23 V 50S ribosomal protein L29P 2238
44 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
45 3OW2 23 U 50S ribosomal protein L29P 2238
46 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
47 1QVG 24 U 50S ribosomal protein L29P 2238
48 3CME 22 V 50S ribosomal protein L29P 2238
49 2QEX 23 V 50S ribosomal protein L29P 2238
50 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
51 1N8R 23 W 50S ribosomal protein L29P 2238
52 1Q81 24 W 50S ribosomal protein L29P 2238
53 1Q82 24 W 50S ribosomal protein L29P 2238
54 1QVF 24 U 50S ribosomal protein L29P 2238
55 1NJI 23 W 50S ribosomal protein L29P 2238
56 1K73 23 W RIBOSOMAL PROTEIN L29 2238
57 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
58 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
59 3I55 23 V 50S ribosomal protein L29P 2238
60 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
61 1Q86 24 W 50S ribosomal protein L29P 2238
62 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
63 3G4S 23 V 50S ribosomal protein L29P 2238
64 3CCJ 22 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274