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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 412 Members. Sequence cutoff: 95% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 24 V 50S ribosomal protein L29P 272569  
2 1VQO 24 V 50S ribosomal protein L29P 2238  
3 1VQ8 24 V 50S ribosomal protein L29P 2238  
4 1S72 24 V 50S ribosomal protein L29P 2238  
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238  
6 1YHQ 24 V 50S ribosomal protein L29P 2238  
7 1VQP 24 V 50S ribosomal protein L29P 2238  
8 1VQM 24 V 50S ribosomal protein L29P 2238  
9 3CC2 22 V 50S ribosomal protein L29P 2238  
10 1VQL 24 V 50S ribosomal protein L29P 2238  
11 1VQK 24 V 50S ribosomal protein L29P 2238  
12 1VQN 25 V 50S ribosomal protein L29P 2238  
13 1YIJ 24 V 50S ribosomal protein L29P 2238  
14 1YI2 24 V 50S ribosomal protein L29P 2238  
15 1VQ9 24 V 50S ribosomal protein L29P 2238  
16 1VQ7 24 V 50S ribosomal protein L29P 2238  
17 3CCM 22 V 50S ribosomal protein L29P 272569  
18 1VQ5 24 V 50S ribosomal protein L29P 2238  
19 3CCJ 22 V 50S ribosomal protein L29P 272569  
20 3CC7 22 V 50S ribosomal protein L29P 2238  
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
22 3CCE 22 V 50S ribosomal protein L29P 272569  
23 3G6E 23 V 50S ribosomal protein L29P 2238  
24 3CPW 23 U 50S ribosomal protein L29P 272569  
25 3CCU 22 V 50S ribosomal protein L29P 272569  
26 1VQ6 25 V 50S ribosomal protein L29P 2238  
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238  
28 3CCL 22 V 50S ribosomal protein L29P 272569  
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
30 1YJ9 24 V 50S ribosomal protein L29P 2238  
31 3CD6 22 V 50S ribosomal protein L29P 272569  
32 3CCV 22 V 50S ribosomal protein L29P 272569  
33 3CC4 22 V 50S ribosomal protein L29P 272569  
34 2OTL 23 V 50S ribosomal protein L29P 2238  
35 3G71 23 V 50S ribosomal protein L29P 2238  
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238  
37 1VQ4 24 V 50S ribosomal protein L29P 2238  
38 1YJN 24 V 50S ribosomal protein L29P 2238  
39 3CMA 22 V 50S ribosomal protein L29P 2238  
40 3CCS 22 V 50S ribosomal protein L29P 272569  
41 3CCQ 22 V 50S ribosomal protein L29P 272569  
42 3I56 22 V 50S ribosomal protein L29P 2238  
43 3CCR 22 V 50S ribosomal protein L29P 272569  
44 2OTJ 23 V 50S ribosomal protein L29P 2238  
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238  
46 3OW2 23 U 50S ribosomal protein L29P 2238  
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238  
48 1QVG 24 U 50S ribosomal protein L29P 2238  
49 3CME 22 V 50S ribosomal protein L29P 2238  
50 2QEX 23 V 50S ribosomal protein L29P 2238  
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238  
52 1N8R 23 W 50S ribosomal protein L29P 2238  
53 1Q81 24 W 50S ribosomal protein L29P 2238  
54 1Q82 24 W 50S ribosomal protein L29P 2238  
55 1QVF 24 U 50S ribosomal protein L29P 2238  
56 1NJI 23 W 50S ribosomal protein L29P 2238  
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238  
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238  
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238  
60 3I55 23 V 50S ribosomal protein L29P 2238  
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238  
62 1Q86 24 W 50S ribosomal protein L29P 2238  
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238  
64 3G4S 23 V 50S ribosomal protein L29P 2238  
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238  
66 2QA4 24 V 50S ribosomal protein L29P 2238  
67 1Q7Y 24 W 50S ribosomal protein L29P 2238  
68 4V4P 22 AW 50S ribosomal protein L29 300852  
69 4V4R 47 B2 50S ribosomal protein L29 274  
70 4V4S 47 B2 50S ribosomal protein L29 274  
71 4V4T 46 B2 50S ribosomal protein L29 274  
72 4ADX 32 V RPL29 187420  
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562  
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 631
95% 36 68 463
90% 36 68 486
70% 36 68 522
50% 36 118 234
40% 36 118 263
30% 38 320 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48113
95% 1 1 33762
90% 1 1 32280
70% 36 68 515
50% 36 116 240
40% 36 116 271
30% 36 116 293
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 408
90% 36 74 432
70% 36 74 461
50% 36 74 507
40% 36 74 544
30% 37 312 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 406
90% 36 74 430
70% 36 74 459
50% 36 76 486
40% 36 76 520
30% 36 78 512
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 465
90% 36 68 489
70% 36 68 525
50% 36 70 549
40% 36 70 583
30% 36 70 583
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1663
95% 36 68 461
90% 36 68 484
70% 36 68 520
50% 36 68 583
40% 36 70 582
30% 36 71 564
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 467
90% 36 68 491
70% 36 68 527
50% 36 70 552
40% 36 70 587
30% 36 71 566
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 459
90% 36 68 482
70% 36 68 518
50% 36 68 580
40% 36 68 614
30% 36 119 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 488
40% 36 78 503
30% 37 274 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 410
90% 36 74 434
70% 36 74 464
50% 36 125 220
40% 36 125 248
30% 36 125 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 308
95% 34 70 445
90% 34 70 465
70% 34 70 500
50% 34 70 553
40% 34 70 588
30% 34 70 585
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 510
40% 36 74 546
30% 36 74 543
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 460
90% 36 68 483
70% 36 68 519
50% 36 68 581
40% 36 70 581
30% 36 71 563
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 469
90% 36 68 493
70% 36 68 529
50% 36 68 588
40% 36 68 621
30% 36 68 614
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51060
95% 3 5 11294
90% 3 5 11114
70% 3 5 10501
50% 3 5 9441
40% 3 5 8612
30% 3 5 7552
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56660
95% 1 1 39523
90% 1 1 37797
70% 3 21 2250
50% 7 30 1530
40% 7 74 412
30% 26 97 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 471
90% 36 68 495
70% 36 68 531
50% 36 69 567
40% 36 69 606
30% 36 69 601
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57931
95% 36 68 472
90% 36 68 496
70% 36 68 532
50% 36 118 235
40% 36 118 264
30% 36 118 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 468
90% 36 68 492
70% 36 68 528
50% 36 68 587
40% 36 68 620
30% 36 117 289
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 458
90% 36 68 481
70% 36 68 517
50% 36 68 578
40% 36 117 268
30% 38 315 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1646
95% 35 67 475
90% 35 67 499
70% 35 67 537
50% 35 115 243
40% 35 117 266
30% 35 117 286
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42415
95% 36 74 400
90% 36 74 424
70% 36 74 454
50% 36 74 501
40% 36 122 253
30% 36 122 271
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7746
95% 36 74 404
90% 36 74 428
70% 36 74 458
50% 36 74 504
40% 36 76 519
30% 36 77 517
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 407
90% 36 74 431
70% 36 74 460
50% 36 74 505
40% 36 122 256
30% 36 122 273
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1674
95% 3 21 2196
90% 36 68 488
70% 36 68 524
50% 51 95 298
40% 58 105 287
30% 58 107 306
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50083
95% 1 1 34865
90% 1 7 8025
70% 3 27 1659
50% 36 74 506
40% 36 78 500
30% 36 78 513
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 409
90% 36 74 433
70% 36 74 462
50% 36 74 508
40% 37 77 511
30% 37 78 514
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.