Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 646
95 % 35 68 789 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 820
70 % 35 68 868
50 % 35 215 204
40 % 45 647 25
30 % 45 647 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50657
95 % 1 1 41938
90 % 1 1 39909
70 % 35 68 869
50 % 35 214 205
40 % 35 214 224
30 % 35 214 242
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 586
95 % 35 74 721 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 746
70 % 35 74 790
50 % 35 74 846
40 % 35 212 225
30 % 35 212 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 577
95 % 35 74 707 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 733
70 % 35 74 779
50 % 35 76 811
40 % 35 76 842
30 % 35 79 810
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 657
95 % 35 68 804 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 835
70 % 35 68 885
50 % 35 70 890
40 % 35 70 920
30 % 35 70 912
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2999
95 % 35 68 810 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 841
70 % 35 68 890
50 % 35 68 937
40 % 35 72 891
30 % 35 72 896
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 647
95 % 35 68 790 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 821
70 % 35 68 870
50 % 35 70 901
40 % 35 70 935
30 % 35 71 907
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 673
95 % 35 68 795 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 826
70 % 35 68 875
50 % 35 68 927
40 % 35 68 957
30 % 35 212 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 589
95 % 35 74 722 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 749
70 % 35 74 795
50 % 35 77 802
40 % 44 496 40
30 % 44 496 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 582
95 % 35 74 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 739
70 % 35 74 784
50 % 35 221 203
40 % 35 222 218
30 % 35 222 237
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 620
95 % 33 70 762 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 794
70 % 33 70 836
50 % 33 70 891
40 % 33 70 921
30 % 33 70 913
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 583
95 % 35 74 715 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 740
70 % 35 74 785
50 % 35 74 840
40 % 44 451 60
30 % 44 477 68
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 651
95 % 35 68 796 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 827
70 % 35 68 876
50 % 35 68 928
40 % 35 70 925
30 % 35 71 906
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 648
95 % 35 68 805 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 836
70 % 35 68 886
50 % 35 68 934
40 % 35 68 963
30 % 35 70 922
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61230
95 % 3 5 15995 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15647
70 % 3 5 14559
50 % 3 5 12862
40 % 3 5 11513
30 % 3 5 9791
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2904
95 % 3 21 3246 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3306
70 % 3 21 3246
50 % 7 30 2217
40 % 7 164 284
30 % 9 168 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 658
95 % 35 68 791 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 822
70 % 35 68 871
50 % 35 69 904
40 % 35 69 939
30 % 35 69 927
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57632
95 % 35 68 798 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 829
70 % 35 68 879
50 % 35 207 209
40 % 35 207 229
30 % 35 207 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 645
95 % 35 68 788 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 819
70 % 35 68 867
50 % 35 68 921
40 % 35 202 235
30 % 35 202 252
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 655
95 % 35 68 802 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 833
70 % 35 68 865
50 % 35 68 932
40 % 35 212 226
30 % 45 636 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2347
95 % 35 68 803 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 834
70 % 35 68 883
50 % 35 205 210
40 % 35 205 231
30 % 35 205 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63666
95 % 35 74 718 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 743
70 % 35 74 787
50 % 35 74 845
40 % 35 220 219
30 % 35 220 239
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 938
95 % 35 74 706 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 732
70 % 35 74 778
50 % 35 74 834
40 % 35 76 841
30 % 36 78 822
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 585
95 % 35 74 716 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 742
70 % 35 74 786
50 % 35 74 844
40 % 36 214 221
30 % 36 214 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2919
95 % 3 21 3258 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 818
70 % 35 68 866
50 % 51 108 415
40 % 58 133 334
30 % 72 292 159
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63664
95 % 1 1 51831
90 % 1 7 11661
70 % 3 27 2523
50 % 35 74 838
40 % 35 79 806
30 % 35 79 814
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 581
95 % 35 74 712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 729
70 % 35 74 775
50 % 35 74 837
40 % 36 78 827
30 % 36 78 824

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CC7 22 V 50S ribosomal protein L29P 2238
20 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
21 3CCE 22 V 50S ribosomal protein L29P 2238
22 3G6E 23 V 50S ribosomal protein L29P 2238
23 3CPW 23 U 50S ribosomal protein L29P 2238
24 3CCU 22 V 50S ribosomal protein L29P 2238
25 1VQ6 25 V 50S ribosomal protein L29P 2238
26 1M90 24 W RIBOSOMAL PROTEIN L29 2238
27 3CCL 22 V 50S ribosomal protein L29P 2238
28 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
29 1YJ9 24 V 50S ribosomal protein L29P 2238
30 3CD6 22 V 50S ribosomal protein L29P 2238
31 3CCV 22 V 50S ribosomal protein L29P 2238
32 3CC4 22 V 50S ribosomal protein L29P 2238
33 2OTL 23 V 50S ribosomal protein L29P 2238
34 3G71 23 V 50S ribosomal protein L29P 2238
35 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
36 1VQ4 24 V 50S ribosomal protein L29P 2238
37 1YJN 24 V 50S ribosomal protein L29P 2238
38 3CMA 22 V 50S ribosomal protein L29P 2238
39 3CCS 22 V 50S ribosomal protein L29P 2238
40 3CCQ 22 V 50S ribosomal protein L29P 2238
41 3I56 22 V 50S ribosomal protein L29P 2238
42 3CCR 22 V 50S ribosomal protein L29P 2238
43 2OTJ 23 V 50S ribosomal protein L29P 2238
44 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
45 3OW2 23 U 50S ribosomal protein L29P 2238
46 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
47 1QVG 24 U 50S ribosomal protein L29P 2238
48 3CME 22 V 50S ribosomal protein L29P 2238
49 2QEX 23 V 50S ribosomal protein L29P 2238
50 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
51 1N8R 23 W 50S ribosomal protein L29P 2238
52 1Q81 24 W 50S ribosomal protein L29P 2238
53 1Q82 24 W 50S ribosomal protein L29P 2238
54 1QVF 24 U 50S ribosomal protein L29P 2238
55 1NJI 23 W 50S ribosomal protein L29P 2238
56 1K73 23 W RIBOSOMAL PROTEIN L29 2238
57 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
58 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
59 3I55 23 V 50S ribosomal protein L29P 2238
60 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
61 1Q86 24 W 50S ribosomal protein L29P 2238
62 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
63 3G4S 23 V 50S ribosomal protein L29P 2238
64 3CCJ 22 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274