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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 475 Members. Sequence cutoff: 70% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 24 V 50S ribosomal protein L29P 272569  
2 1VQO 24 V 50S ribosomal protein L29P 2238  
3 1VQ8 24 V 50S ribosomal protein L29P 2238  
4 1S72 24 V 50S ribosomal protein L29P 2238  
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238  
6 1YHQ 24 V 50S ribosomal protein L29P 2238  
7 1VQP 24 V 50S ribosomal protein L29P 2238  
8 1VQM 24 V 50S ribosomal protein L29P 2238  
9 3CC2 22 V 50S ribosomal protein L29P 2238  
10 1VQL 24 V 50S ribosomal protein L29P 2238  
11 1VQK 24 V 50S ribosomal protein L29P 2238  
12 1VQN 25 V 50S ribosomal protein L29P 2238  
13 1YIJ 24 V 50S ribosomal protein L29P 2238  
14 1YI2 24 V 50S ribosomal protein L29P 2238  
15 1VQ9 24 V 50S ribosomal protein L29P 2238  
16 1VQ7 24 V 50S ribosomal protein L29P 2238  
17 3CCM 22 V 50S ribosomal protein L29P 272569  
18 1VQ5 24 V 50S ribosomal protein L29P 2238  
19 3CCJ 22 V 50S ribosomal protein L29P 272569  
20 3CC7 22 V 50S ribosomal protein L29P 2238  
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
22 3CCE 22 V 50S ribosomal protein L29P 272569  
23 3G6E 23 V 50S ribosomal protein L29P 2238  
24 3CPW 23 U 50S ribosomal protein L29P 2238  
25 3CCU 22 V 50S ribosomal protein L29P 272569  
26 1VQ6 25 V 50S ribosomal protein L29P 2238  
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238  
28 3CCL 22 V 50S ribosomal protein L29P 272569  
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
30 1YJ9 24 V 50S ribosomal protein L29P 2238  
31 3CD6 22 V 50S ribosomal protein L29P 272569  
32 3CCV 22 V 50S ribosomal protein L29P 272569  
33 3CC4 22 V 50S ribosomal protein L29P 272569  
34 2OTL 23 V 50S ribosomal protein L29P 2238  
35 3G71 23 V 50S ribosomal protein L29P 2238  
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238  
37 1VQ4 24 V 50S ribosomal protein L29P 2238  
38 1YJN 24 V 50S ribosomal protein L29P 2238  
39 3CMA 22 V 50S ribosomal protein L29P 2238  
40 3CCS 22 V 50S ribosomal protein L29P 272569  
41 3CCQ 22 V 50S ribosomal protein L29P 272569  
42 3I56 22 V 50S ribosomal protein L29P 2238  
43 3CCR 22 V 50S ribosomal protein L29P 272569  
44 2OTJ 23 V 50S ribosomal protein L29P 2238  
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238  
46 3OW2 23 U 50S ribosomal protein L29P 2238  
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238  
48 1QVG 24 U 50S ribosomal protein L29P 2238  
49 3CME 22 V 50S ribosomal protein L29P 2238  
50 2QEX 23 V 50S ribosomal protein L29P 2238  
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238  
52 1N8R 23 W 50S ribosomal protein L29P 2238  
53 1Q81 24 W 50S ribosomal protein L29P 2238  
54 1Q82 24 W 50S ribosomal protein L29P 2238  
55 1QVF 24 U 50S ribosomal protein L29P 2238  
56 1NJI 23 W 50S ribosomal protein L29P 2238  
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238  
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238  
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238  
60 3I55 23 V 50S ribosomal protein L29P 2238  
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238  
62 1Q86 24 W 50S ribosomal protein L29P 2238  
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238  
64 3G4S 23 V 50S ribosomal protein L29P 2238  
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238  
66 2QA4 24 V 50S ribosomal protein L29P 2238  
67 1Q7Y 24 W 50S ribosomal protein L29P 2238  
68 4V4P 22 AW 50S ribosomal protein L29 300852  
69 4V4R 47 B2 50S ribosomal protein L29 274  
70 4V4S 47 B2 50S ribosomal protein L29 274  
71 4V4T 46 B2 50S ribosomal protein L29 274  
72 4ADX 32 V RPL29 187420  
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562  
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 666
95% 36 68 474
90% 36 68 496
70% 36 68 536
50% 36 121 240
40% 36 121 265
30% 41 335 48
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49419
95% 1 1 34650
90% 1 1 33111
70% 36 68 528
50% 36 119 245
40% 36 119 271
30% 36 119 288
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 74 515
40% 36 74 557
30% 40 327 52
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 413
90% 36 74 438
70% 36 74 467
50% 36 76 494
40% 36 76 533
30% 36 78 518
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 476
90% 36 68 499
70% 36 68 539
50% 36 70 574
40% 36 70 609
30% 36 70 609
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1714
95% 36 68 472
90% 36 68 494
70% 36 68 534
50% 36 68 608
40% 36 70 607
30% 36 71 589
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 478
90% 36 68 501
70% 36 68 541
50% 36 70 578
40% 36 70 614
30% 36 71 592
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 336
95% 36 68 470
90% 36 68 492
70% 36 68 532
50% 36 68 605
40% 36 68 641
30% 36 122 279
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 76 495
40% 36 78 515
30% 40 286 71
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 128 220
40% 36 128 247
30% 36 128 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 313
95% 34 70 455
90% 34 70 475
70% 34 70 511
50% 34 70 579
40% 34 70 615
30% 34 70 612
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 419
90% 36 74 444
70% 36 74 475
50% 36 74 520
40% 36 74 560
30% 36 74 555
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 471
90% 36 68 493
70% 36 68 533
50% 36 68 606
40% 36 70 606
30% 36 71 588
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 480
90% 36 68 503
70% 36 68 543
50% 36 68 612
40% 36 68 646
30% 36 68 640
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52409
95% 3 5 11561
90% 3 5 11373
70% 3 5 10759
50% 3 5 9664
40% 3 5 8822
30% 3 5 7716
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58112
95% 1 1 40506
90% 1 1 38707
70% 3 21 2310
50% 7 30 1571
40% 7 77 414
30% 26 100 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 482
90% 36 68 505
70% 36 68 545
50% 36 69 596
40% 36 69 631
30% 36 69 627
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59406
95% 36 68 483
90% 36 68 506
70% 36 68 546
50% 36 121 241
40% 36 121 266
30% 36 121 283
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 479
90% 36 68 502
70% 36 68 542
50% 36 68 611
40% 36 68 645
30% 36 120 287
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 469
90% 36 68 491
70% 36 68 531
50% 36 68 604
40% 36 120 268
30% 41 330 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1697
95% 36 68 467
90% 36 68 489
70% 36 68 527
50% 36 119 244
40% 36 121 264
30% 36 121 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43616
95% 36 74 407
90% 36 74 432
70% 36 74 463
50% 36 74 509
40% 36 125 253
30% 36 125 271
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8002
95% 36 74 411
90% 36 74 436
70% 36 74 466
50% 36 74 511
40% 36 76 531
30% 36 77 526
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 414
90% 36 74 439
70% 36 74 468
50% 36 74 513
40% 36 126 252
30% 36 126 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1725
95% 3 21 2261
90% 36 68 498
70% 36 68 538
50% 51 95 310
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51422
95% 1 1 35769
90% 1 7 8220
70% 3 27 1698
50% 36 74 514
40% 36 79 503
30% 36 79 511
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 519
40% 37 77 524
30% 37 78 520
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.