Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 880
95 % 35 68 706 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 736
70 % 35 68 793
50 % 35 180 204
40 % 43 543 20
30 % 43 543 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61841
95 % 1 1 43156
90 % 1 1 40994
70 % 35 68 784
50 % 35 176 209
40 % 35 176 232
30 % 35 176 243
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 627 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 656
70 % 35 74 700
50 % 35 74 754
40 % 35 74 790
30 % 42 523 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 625 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 654
70 % 35 74 697
50 % 35 76 727
40 % 35 76 762
30 % 35 79 724
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 519
95 % 35 68 708 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 739
70 % 35 68 796
50 % 35 70 805
40 % 35 70 843
30 % 35 70 828
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2312
95 % 35 68 705 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 735
70 % 35 68 792
50 % 35 68 836
40 % 35 72 817
30 % 35 72 804
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 520
95 % 35 68 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 741
70 % 35 68 798
50 % 35 70 807
40 % 35 70 844
30 % 35 71 815
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 529
95 % 35 68 703 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 733
70 % 35 68 789
50 % 35 68 833
40 % 35 68 868
30 % 35 179 234
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 456
95 % 35 74 631 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 660
70 % 35 74 707
50 % 35 76 733
40 % 35 78 742
30 % 42 426 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 455
95 % 35 74 630 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 659
70 % 35 74 705
50 % 35 183 201
40 % 35 184 220
30 % 35 184 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 488
95 % 33 70 678 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 704
70 % 33 70 760
50 % 33 70 808
40 % 33 70 845
30 % 33 70 830
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 457
95 % 35 74 632 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 661
70 % 35 74 708
50 % 35 74 759
40 % 42 387 53
30 % 42 413 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 516
95 % 35 68 704 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 734
70 % 35 68 790
50 % 35 68 834
40 % 35 70 842
30 % 35 71 813
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 522
95 % 35 68 712 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 743
70 % 35 68 800
50 % 35 68 841
40 % 35 68 872
30 % 35 68 856
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65332
95 % 3 5 14706 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14433
70 % 3 5 13542
50 % 3 5 12031
40 % 3 5 10909
30 % 3 5 9473
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71840
95 % 1 1 49844
90 % 1 1 47294
70 % 3 21 3001
50 % 7 30 2001
40 % 7 134 292
30 % 26 157 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 523
95 % 35 68 713 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 744
70 % 35 68 801
50 % 35 69 821
40 % 35 69 856
30 % 35 69 843
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73298
95 % 35 68 714 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 745
70 % 35 68 802
50 % 35 177 206
40 % 35 177 229
30 % 35 177 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 521
95 % 35 68 711 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 742
70 % 35 68 799
50 % 35 68 840
40 % 35 68 871
30 % 35 173 246
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 515
95 % 35 68 702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 731
70 % 35 68 787
50 % 35 68 832
40 % 35 178 225
30 % 43 534 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2295
95 % 35 68 699 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 728
70 % 35 68 783
50 % 35 175 208
40 % 35 177 228
30 % 35 177 237
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54812
95 % 35 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 648
70 % 35 74 692
50 % 35 74 745
40 % 35 184 218
30 % 35 184 227
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10391
95 % 35 74 620 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 651
70 % 35 74 694
50 % 35 74 747
40 % 35 76 759
30 % 36 78 738
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 626 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 655
70 % 35 74 698
50 % 35 74 752
40 % 36 184 219
30 % 36 184 229
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2324
95 % 3 21 2972 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 738
70 % 35 68 795
50 % 50 105 357
40 % 57 126 286
30 % 57 128 288
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64177
95 % 1 1 44466
90 % 1 7 10490
70 % 3 27 2233
50 % 35 74 753
40 % 35 79 729
30 % 35 79 726
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 453
95 % 35 74 628
90 % 35 74 657
70 % 35 74 703
50 % 35 74 758
40 % 36 77 751
30 % 36 78 742

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CC7 22 V 50S ribosomal protein L29P 2238
20 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
21 3CCE 22 V 50S ribosomal protein L29P 2238
22 3G6E 23 V 50S ribosomal protein L29P 2238
23 3CPW 23 U 50S ribosomal protein L29P 2238
24 3CCU 22 V 50S ribosomal protein L29P 2238
25 1VQ6 25 V 50S ribosomal protein L29P 2238
26 1M90 24 W RIBOSOMAL PROTEIN L29 2238
27 3CCL 22 V 50S ribosomal protein L29P 2238
28 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
29 1YJ9 24 V 50S ribosomal protein L29P 2238
30 3CD6 22 V 50S ribosomal protein L29P 2238
31 3CCV 22 V 50S ribosomal protein L29P 2238
32 3CC4 22 V 50S ribosomal protein L29P 2238
33 2OTL 23 V 50S ribosomal protein L29P 2238
34 3G71 23 V 50S ribosomal protein L29P 2238
35 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
36 1VQ4 24 V 50S ribosomal protein L29P 2238
37 1YJN 24 V 50S ribosomal protein L29P 2238
38 3CMA 22 V 50S ribosomal protein L29P 2238
39 3CCS 22 V 50S ribosomal protein L29P 2238
40 3CCQ 22 V 50S ribosomal protein L29P 2238
41 3I56 22 V 50S ribosomal protein L29P 2238
42 3CCR 22 V 50S ribosomal protein L29P 2238
43 2OTJ 23 V 50S ribosomal protein L29P 2238
44 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
45 3OW2 23 U 50S ribosomal protein L29P 2238
46 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
47 1QVG 24 U 50S ribosomal protein L29P 2238
48 3CME 22 V 50S ribosomal protein L29P 2238
49 2QEX 23 V 50S ribosomal protein L29P 2238
50 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
51 1N8R 23 W 50S ribosomal protein L29P 2238
52 1Q81 24 W 50S ribosomal protein L29P 2238
53 1Q82 24 W 50S ribosomal protein L29P 2238
54 1QVF 24 U 50S ribosomal protein L29P 2238
55 1NJI 23 W 50S ribosomal protein L29P 2238
56 1K73 23 W RIBOSOMAL PROTEIN L29 2238
57 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
58 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
59 3I55 23 V 50S ribosomal protein L29P 2238
60 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
61 1Q86 24 W 50S ribosomal protein L29P 2238
62 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
63 3G4S 23 V 50S ribosomal protein L29P 2238
64 3CCJ 22 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274