Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 714
95 % 36 68 509
90 % 36 68 538
70 % 36 68 588
50 % 36 137 223
40 % 36 137 250
30 % 42 407 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52834
95 % 1 1 36927
90 % 1 1 35202
70 % 36 68 580
50 % 36 132 237
40 % 36 132 263
30 % 36 132 278
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 301
95 % 36 74 443
90 % 36 74 466
70 % 36 74 509
50 % 36 74 589
40 % 36 74 633
30 % 41 396 45
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 299
95 % 36 74 440
90 % 36 74 464
70 % 36 74 506
50 % 36 76 564
40 % 36 76 608
30 % 36 78 581
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 346
95 % 36 68 511
90 % 36 68 541
70 % 36 68 591
50 % 36 70 648
40 % 36 70 688
30 % 36 70 690
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1848
95 % 36 68 507
90 % 36 68 536
70 % 36 68 586
50 % 36 68 684
40 % 36 70 685
30 % 36 71 671
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 347
95 % 36 68 512
90 % 36 68 542
70 % 36 68 592
50 % 36 70 649
40 % 36 70 690
30 % 36 71 674
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 356
95 % 36 68 505
90 % 36 68 534
70 % 36 68 584
50 % 36 68 681
40 % 36 68 714
30 % 36 136 267
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 448
90 % 36 74 471
70 % 36 74 517
50 % 36 76 568
40 % 36 78 583
30 % 41 342 53
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 304
95 % 36 74 446
90 % 36 74 469
70 % 36 74 514
50 % 36 141 219
40 % 36 141 248
30 % 36 141 260
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 331
95 % 34 70 487
90 % 34 70 514
70 % 34 70 563
50 % 34 70 651
40 % 34 70 691
30 % 34 70 691
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 449
90 % 36 74 472
70 % 36 74 518
50 % 36 74 596
40 % 36 74 640
30 % 36 74 635
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 344
95 % 36 68 506
90 % 36 68 535
70 % 36 68 585
50 % 36 68 682
40 % 36 70 684
30 % 36 71 670
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 349
95 % 36 68 514
90 % 36 68 544
70 % 36 68 594
50 % 36 68 688
40 % 36 68 718
30 % 36 68 719
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55929
95 % 3 5 12400
90 % 3 5 12166
70 % 3 5 11473
50 % 3 5 10284
40 % 3 5 9380
30 % 3 5 8184
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61819
95 % 1 1 42933
90 % 1 1 40943
70 % 3 21 2498
50 % 7 30 1686
40 % 7 90 384
30 % 26 113 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 516
90 % 36 68 546
70 % 36 68 596
50 % 36 69 670
40 % 36 69 705
30 % 36 69 706
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 36 68 517
90 % 36 68 547
70 % 36 68 597
50 % 36 134 230
40 % 36 134 258
30 % 36 134 274
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 348
95 % 36 68 513
90 % 36 68 543
70 % 36 68 593
50 % 36 68 687
40 % 36 68 717
30 % 36 132 281
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 343
95 % 36 68 504
90 % 36 68 533
70 % 36 68 583
50 % 36 68 680
40 % 36 136 253
30 % 42 402 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1825
95 % 36 68 501
90 % 36 68 530
70 % 36 68 579
50 % 36 132 236
40 % 36 134 256
30 % 36 134 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46681
95 % 36 74 432
90 % 36 74 457
70 % 36 74 502
50 % 36 74 580
40 % 36 141 244
30 % 36 141 257
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8647
95 % 36 74 436
90 % 36 74 461
70 % 36 74 505
50 % 36 74 583
40 % 36 76 605
30 % 36 77 592
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 300
95 % 36 74 442
90 % 36 74 465
70 % 36 74 507
50 % 36 74 587
40 % 37 141 247
30 % 37 141 259
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1861
95 % 3 21 2439
90 % 36 68 540
70 % 36 68 590
50 % 51 95 340
40 % 58 107 308
30 % 58 109 317
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54920
95 % 1 1 38086
90 % 1 7 8809
70 % 3 27 1833
50 % 36 74 588
40 % 36 79 570
30 % 36 79 573
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 302
95 % 36 74 444
90 % 36 74 467
70 % 36 74 512
50 % 36 74 592
40 % 37 77 595
30 % 37 78 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
2 1VQO 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
3 1VQ8 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
4 1S72 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
6 1YHQ 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
7 1VQP 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
8 1VQM 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
9 3CC2 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
10 1VQL 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
11 1VQK 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
12 1VQN 25 V 50S ribosomal protein L29P 2238 2.3.3 | Details
13 1YIJ 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
14 1YI2 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
15 1VQ9 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
16 1VQ7 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
17 3CCM 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
18 1VQ5 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
19 3CCJ 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
20 3CC7 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238 2.3.3 | Details
22 3CCE 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
23 3G6E 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
24 3CPW 23 U 50S ribosomal protein L29P 2238 2.3.3 | Details
25 3CCU 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
26 1VQ6 25 V 50S ribosomal protein L29P 2238 2.3.3 | Details
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
28 3CCL 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238 2.3.3 | Details
30 1YJ9 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
31 3CD6 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
32 3CCV 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
33 3CC4 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
34 2OTL 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
35 3G71 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
37 1VQ4 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
38 1YJN 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
39 3CMA 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
40 3CCS 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
41 3CCQ 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
42 3I56 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
43 3CCR 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
44 2OTJ 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
46 3OW2 23 U 50S ribosomal protein L29P 2238 2.3.3 | Details
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
48 1QVG 24 U 50S ribosomal protein L29P 2238 2.3.3 | Details
49 3CME 22 V 50S ribosomal protein L29P 2238 2.3.3 | Details
50 2QEX 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
52 1N8R 23 W 50S ribosomal protein L29P 2238 2.3.3 | Details
53 1Q81 24 W 50S ribosomal protein L29P 2238 2.3.3 | Details
54 1Q82 24 W 50S ribosomal protein L29P 2238 2.3.3 | Details
55 1QVF 24 U 50S ribosomal protein L29P 2238 2.3.3 | Details
56 1NJI 23 W 50S ribosomal protein L29P 2238 2.3.3 | Details
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
60 3I55 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
62 1Q86 24 W 50S ribosomal protein L29P 2238 2.3.3 | Details
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238 2.3.3 | Details
64 3G4S 23 V 50S ribosomal protein L29P 2238 2.3.3 | Details
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238 2.3.3 | Details
66 2QA4 24 V 50S ribosomal protein L29P 2238 2.3.3 | Details
67 1Q7Y 24 W 50S ribosomal protein L29P 2238 2.3.3 | Details
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262 2.3.3 | Details
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562 2.3.3 | Details
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274