Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 231
40 % 36 138 258
30 % 43 417 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53956
95 % 1 1 37687
90 % 1 1 35923
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 457
90 % 36 74 483
70 % 36 74 526
50 % 36 74 603
40 % 36 74 652
30 % 42 406 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 455
90 % 36 74 481
70 % 36 74 523
50 % 36 76 579
40 % 36 76 624
30 % 36 78 599
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 706
30 % 36 70 707
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1903
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 703
30 % 36 71 687
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 708
30 % 36 71 690
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 725
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 76 581
40 % 36 78 597
30 % 42 351 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 460
90 % 36 74 486
70 % 36 74 531
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 709
30 % 34 70 709
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 463
90 % 36 74 489
70 % 36 74 534
50 % 36 74 610
40 % 36 74 659
30 % 36 74 650
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 702
30 % 36 71 686
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 728
30 % 36 68 729
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57082
95 % 3 5 12676
90 % 3 5 12439
70 % 3 5 11713
50 % 3 5 10502
40 % 3 5 9582
30 % 3 5 8353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63043
95 % 1 1 43760
90 % 1 1 41723
70 % 3 21 2551
50 % 7 30 1716
40 % 7 91 390
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 720
30 % 36 69 723
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64384
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 727
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 412 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1881
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47698
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8845
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 622
30 % 36 77 610
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1915
95 % 3 21 2493
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56064
95 % 1 1 38858
90 % 1 7 9001
70 % 3 27 1871
50 % 36 74 602
40 % 36 79 583
30 % 36 79 589
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 458
90 % 36 74 484
70 % 36 74 529
50 % 36 74 607
40 % 37 77 609
30 % 37 78 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CCJ 22 V 50S ribosomal protein L29P 2238
20 3CC7 22 V 50S ribosomal protein L29P 2238
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
22 3CCE 22 V 50S ribosomal protein L29P 2238
23 3G6E 23 V 50S ribosomal protein L29P 2238
24 3CPW 23 U 50S ribosomal protein L29P 2238
25 3CCU 22 V 50S ribosomal protein L29P 2238
26 1VQ6 25 V 50S ribosomal protein L29P 2238
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238
28 3CCL 22 V 50S ribosomal protein L29P 2238
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
30 1YJ9 24 V 50S ribosomal protein L29P 2238
31 3CD6 22 V 50S ribosomal protein L29P 2238
32 3CCV 22 V 50S ribosomal protein L29P 2238
33 3CC4 22 V 50S ribosomal protein L29P 2238
34 2OTL 23 V 50S ribosomal protein L29P 2238
35 3G71 23 V 50S ribosomal protein L29P 2238
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
37 1VQ4 24 V 50S ribosomal protein L29P 2238
38 1YJN 24 V 50S ribosomal protein L29P 2238
39 3CMA 22 V 50S ribosomal protein L29P 2238
40 3CCS 22 V 50S ribosomal protein L29P 2238
41 3CCQ 22 V 50S ribosomal protein L29P 2238
42 3I56 22 V 50S ribosomal protein L29P 2238
43 3CCR 22 V 50S ribosomal protein L29P 2238
44 2OTJ 23 V 50S ribosomal protein L29P 2238
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
46 3OW2 23 U 50S ribosomal protein L29P 2238
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
48 1QVG 24 U 50S ribosomal protein L29P 2238
49 3CME 22 V 50S ribosomal protein L29P 2238
50 2QEX 23 V 50S ribosomal protein L29P 2238
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
52 1N8R 23 W 50S ribosomal protein L29P 2238
53 1Q81 24 W 50S ribosomal protein L29P 2238
54 1Q82 24 W 50S ribosomal protein L29P 2238
55 1QVF 24 U 50S ribosomal protein L29P 2238
56 1NJI 23 W 50S ribosomal protein L29P 2238
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
60 3I55 23 V 50S ribosomal protein L29P 2238
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
62 1Q86 24 W 50S ribosomal protein L29P 2238
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
64 3G4S 23 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274