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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 296 Members. Sequence cutoff: 100% Cluster size: 74 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 24 V 50S ribosomal protein L29P 272569  
2 1VQO 24 V 50S ribosomal protein L29P 2238  
3 1VQ8 24 V 50S ribosomal protein L29P 2238  
4 1S72 24 V 50S ribosomal protein L29P 2238  
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238  
6 1YHQ 24 V 50S ribosomal protein L29P 2238  
7 1VQP 24 V 50S ribosomal protein L29P 2238  
8 1VQM 24 V 50S ribosomal protein L29P 2238  
9 3CC2 22 V 50S ribosomal protein L29P 2238  
10 1VQL 24 V 50S ribosomal protein L29P 2238  
11 1VQK 24 V 50S ribosomal protein L29P 2238  
12 1VQN 25 V 50S ribosomal protein L29P 2238  
13 1YIJ 24 V 50S ribosomal protein L29P 2238  
14 1YI2 24 V 50S ribosomal protein L29P 2238  
15 1VQ9 24 V 50S ribosomal protein L29P 2238  
16 1VQ7 24 V 50S ribosomal protein L29P 2238  
17 3CCM 22 V 50S ribosomal protein L29P 2238  
18 1VQ5 24 V 50S ribosomal protein L29P 2238  
19 3CCJ 22 V 50S ribosomal protein L29P 2238  
20 3CC7 22 V 50S ribosomal protein L29P 2238  
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
22 3CCE 22 V 50S ribosomal protein L29P 2238  
23 3G6E 23 V 50S ribosomal protein L29P 2238  
24 3CPW 23 U 50S ribosomal protein L29P 2238  
25 3CCU 22 V 50S ribosomal protein L29P 2238  
26 1VQ6 25 V 50S ribosomal protein L29P 2238  
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238  
28 3CCL 22 V 50S ribosomal protein L29P 2238  
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238  
30 1YJ9 24 V 50S ribosomal protein L29P 2238  
31 3CD6 22 V 50S ribosomal protein L29P 2238  
32 3CCV 22 V 50S ribosomal protein L29P 2238  
33 3CC4 22 V 50S ribosomal protein L29P 2238  
34 2OTL 23 V 50S ribosomal protein L29P 2238  
35 3G71 23 V 50S ribosomal protein L29P 2238  
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238  
37 1VQ4 24 V 50S ribosomal protein L29P 2238  
38 1YJN 24 V 50S ribosomal protein L29P 2238  
39 3CMA 22 V 50S ribosomal protein L29P 2238  
40 3CCS 22 V 50S ribosomal protein L29P 2238  
41 3CCQ 22 V 50S ribosomal protein L29P 2238  
42 3I56 22 V 50S ribosomal protein L29P 2238  
43 3CCR 22 V 50S ribosomal protein L29P 2238  
44 2OTJ 23 V 50S ribosomal protein L29P 2238  
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238  
46 3OW2 23 U 50S ribosomal protein L29P 2238  
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238  
48 1QVG 24 U 50S ribosomal protein L29P 2238  
49 3CME 22 V 50S ribosomal protein L29P 2238  
50 2QEX 23 V 50S ribosomal protein L29P 2238  
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238  
52 1N8R 23 W 50S ribosomal protein L29P 2238  
53 1Q81 24 W 50S ribosomal protein L29P 2238  
54 1Q82 24 W 50S ribosomal protein L29P 2238  
55 1QVF 24 U 50S ribosomal protein L29P 2238  
56 1NJI 23 W 50S ribosomal protein L29P 2238  
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238  
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238  
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238  
60 3I55 23 V 50S ribosomal protein L29P 2238  
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238  
62 1Q86 24 W 50S ribosomal protein L29P 2238  
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238  
64 3G4S 23 V 50S ribosomal protein L29P 2238  
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238  
66 2QA4 24 V 50S ribosomal protein L29P 2238  
67 1Q7Y 24 W 50S ribosomal protein L29P 2238  
68 4V4P 22 AW 50S ribosomal protein L29 300852  
69 4V4R 47 B2 50S ribosomal protein L29 274  
70 4V4S 47 B2 50S ribosomal protein L29 274  
71 4V4T 46 B2 50S ribosomal protein L29 274  
72 4ADX 32 V RPL29 187420  
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562  
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 672
95% 36 68 478
90% 36 68 502
70% 36 68 540
50% 36 123 236
40% 36 123 263
30% 41 358 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49933
95% 1 1 34996
90% 1 1 33434
70% 36 68 533
50% 36 121 244
40% 36 121 269
30% 36 121 286
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 444
70% 36 74 476
50% 36 74 529
40% 36 74 569
30% 40 350 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 442
70% 36 74 473
50% 36 76 500
40% 36 76 543
30% 36 78 528
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 480
90% 36 68 505
70% 36 68 543
50% 36 70 586
40% 36 70 623
30% 36 70 624
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1734
95% 36 68 476
90% 36 68 500
70% 36 68 538
50% 36 68 620
40% 36 70 622
30% 36 71 604
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 482
90% 36 68 507
70% 36 68 546
50% 36 70 589
40% 36 70 627
30% 36 71 606
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 339
95% 36 68 474
90% 36 68 498
70% 36 68 536
50% 36 68 617
40% 36 68 651
30% 36 124 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 421
90% 36 74 447
70% 36 74 480
50% 36 76 504
40% 36 78 525
30% 40 307 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 446
70% 36 74 479
50% 36 130 222
40% 36 130 247
30% 36 130 262
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 316
95% 34 70 460
90% 34 70 481
70% 34 70 516
50% 34 70 591
40% 34 70 629
30% 34 70 627
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 296
95% 36 74 422
90% 36 74 448
70% 36 74 481
50% 36 74 533
40% 36 74 573
30% 36 74 566
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 475
90% 36 68 499
70% 36 68 537
50% 36 68 618
40% 36 70 621
30% 36 71 603
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 484
90% 36 68 509
70% 36 68 548
50% 36 68 624
40% 36 68 657
30% 36 68 654
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52947
95% 3 5 11671
90% 3 5 11482
70% 3 5 10852
50% 3 5 9743
40% 3 5 8894
30% 3 5 7776
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58675
95% 1 1 40873
90% 1 1 39051
70% 3 21 2343
50% 7 30 1591
40% 7 79 408
30% 26 102 333
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 486
90% 36 68 511
70% 36 68 550
50% 36 69 609
40% 36 69 644
30% 36 69 641
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59978
95% 36 68 487
90% 36 68 512
70% 36 68 551
50% 36 123 237
40% 36 123 264
30% 36 123 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 483
90% 36 68 508
70% 36 68 547
50% 36 68 623
40% 36 68 656
30% 36 122 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 473
90% 36 68 497
70% 36 68 535
50% 36 68 616
40% 36 122 266
30% 41 353 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1717
95% 36 68 471
90% 36 68 494
70% 36 68 532
50% 36 121 243
40% 36 123 262
30% 36 123 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44077
95% 36 74 409
90% 36 74 435
70% 36 74 468
50% 36 74 520
40% 36 127 254
30% 36 127 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8108
95% 36 74 413
90% 36 74 439
70% 36 74 472
50% 36 74 522
40% 36 76 539
30% 36 77 533
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 443
70% 36 74 474
50% 36 74 527
40% 36 128 250
30% 36 128 266
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1745
95% 3 21 2285
90% 36 68 504
70% 36 68 542
50% 51 95 313
40% 58 105 294
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51959
95% 1 1 36125
90% 1 7 8305
70% 3 27 1721
50% 36 74 528
40% 36 79 512
30% 36 79 520
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 419
90% 36 74 445
70% 36 74 478
50% 36 74 531
40% 37 77 532
30% 37 78 529
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.