Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 661
90 % 36 68 690
70 % 36 68 736
50 % 36 176 200
40 % 36 176 221
30 % 44 510 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58908
95 % 1 1 41048
90 % 1 1 39066
70 % 36 68 728
50 % 36 172 207
40 % 36 172 231
30 % 36 172 236
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 586
90 % 36 74 616
70 % 36 74 646
50 % 36 74 693
40 % 36 74 732
30 % 43 492 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 584
90 % 36 74 614
70 % 36 74 643
50 % 36 76 665
40 % 36 76 708
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 470
95 % 36 68 662
90 % 36 68 692
70 % 36 68 738
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2169
95 % 36 68 660
90 % 36 68 688
70 % 36 68 734
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 741
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 486
95 % 36 68 658
90 % 36 68 686
70 % 36 68 731
50 % 36 68 781
40 % 36 68 816
30 % 36 175 230
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 590
90 % 36 74 620
70 % 36 74 652
50 % 36 76 669
40 % 36 78 689
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 589
90 % 36 74 619
70 % 36 74 651
50 % 36 180 196
40 % 36 180 215
30 % 36 180 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 449
95 % 34 70 632
90 % 34 70 661
70 % 34 70 710
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 591
90 % 36 74 621
70 % 36 74 653
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 474
95 % 36 68 667
90 % 36 68 696
70 % 36 68 743
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62252
95 % 3 5 13932
90 % 3 5 13677
70 % 3 5 12834
50 % 3 5 11458
40 % 3 5 10390
30 % 3 5 9014
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68547
95 % 1 1 47486
90 % 1 1 45140
70 % 3 21 2849
50 % 7 30 1903
40 % 7 129 298
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 476
95 % 36 68 670
90 % 36 68 699
70 % 36 68 747
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69950
95 % 36 68 671
90 % 36 68 700
70 % 36 68 748
50 % 36 173 203
40 % 36 173 226
30 % 36 173 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 742
50 % 36 68 786
40 % 36 68 819
30 % 36 169 240
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 657
90 % 36 68 685
70 % 36 68 730
50 % 36 68 780
40 % 36 174 224
30 % 44 501 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2152
95 % 36 68 654
90 % 36 68 682
70 % 36 68 726
50 % 36 171 206
40 % 36 173 225
30 % 36 173 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52160
95 % 36 74 575
90 % 36 74 606
70 % 36 74 639
50 % 36 74 687
40 % 36 180 212
30 % 36 180 222
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9818
95 % 36 74 580
90 % 36 74 612
70 % 36 74 642
50 % 36 74 689
40 % 36 76 706
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 585
90 % 36 74 615
70 % 36 74 644
50 % 36 74 691
40 % 37 180 214
30 % 37 180 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2180
95 % 3 21 2818
90 % 36 68 691
70 % 36 68 737
50 % 51 105 322
40 % 58 122 278
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61157
95 % 1 1 42297
90 % 1 7 9912
70 % 3 27 2122
50 % 36 74 692
40 % 36 79 677
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 587
90 % 36 74 617
70 % 36 74 649
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 24 V 50S ribosomal protein L29P 2238
2 1VQO 24 V 50S ribosomal protein L29P 2238
3 1VQ8 24 V 50S ribosomal protein L29P 2238
4 1S72 24 V 50S ribosomal protein L29P 2238
5 1JJ2 23 U RIBOSOMAL PROTEIN L29 2238
6 1YHQ 24 V 50S ribosomal protein L29P 2238
7 1VQP 24 V 50S ribosomal protein L29P 2238
8 1VQM 24 V 50S ribosomal protein L29P 2238
9 3CC2 22 V 50S ribosomal protein L29P 2238
10 1VQL 24 V 50S ribosomal protein L29P 2238
11 1VQK 24 V 50S ribosomal protein L29P 2238
12 1VQN 25 V 50S ribosomal protein L29P 2238
13 1YIJ 24 V 50S ribosomal protein L29P 2238
14 1YI2 24 V 50S ribosomal protein L29P 2238
15 1VQ9 24 V 50S ribosomal protein L29P 2238
16 1VQ7 24 V 50S ribosomal protein L29P 2238
17 3CCM 22 V 50S ribosomal protein L29P 2238
18 1VQ5 24 V 50S ribosomal protein L29P 2238
19 3CCJ 22 V 50S ribosomal protein L29P 2238
20 3CC7 22 V 50S ribosomal protein L29P 2238
21 1YIT 28 V 50S RIBOSOMAL PROTEIN L29P 2238
22 3CCE 22 V 50S ribosomal protein L29P 2238
23 3G6E 23 V 50S ribosomal protein L29P 2238
24 3CPW 23 U 50S ribosomal protein L29P 2238
25 3CCU 22 V 50S ribosomal protein L29P 2238
26 1VQ6 25 V 50S ribosomal protein L29P 2238
27 1M90 24 W RIBOSOMAL PROTEIN L29 2238
28 3CCL 22 V 50S ribosomal protein L29P 2238
29 1YJW 28 V 50S RIBOSOMAL PROTEIN L29P 2238
30 1YJ9 24 V 50S ribosomal protein L29P 2238
31 3CD6 22 V 50S ribosomal protein L29P 2238
32 3CCV 22 V 50S ribosomal protein L29P 2238
33 3CC4 22 V 50S ribosomal protein L29P 2238
34 2OTL 23 V 50S ribosomal protein L29P 2238
35 3G71 23 V 50S ribosomal protein L29P 2238
36 1FFK 21 S RIBOSOMAL PROTEIN L29 2238
37 1VQ4 24 V 50S ribosomal protein L29P 2238
38 1YJN 24 V 50S ribosomal protein L29P 2238
39 3CMA 22 V 50S ribosomal protein L29P 2238
40 3CCS 22 V 50S ribosomal protein L29P 2238
41 3CCQ 22 V 50S ribosomal protein L29P 2238
42 3I56 22 V 50S ribosomal protein L29P 2238
43 3CCR 22 V 50S ribosomal protein L29P 2238
44 2OTJ 23 V 50S ribosomal protein L29P 2238
45 1KQS 25 U RIBOSOMAL PROTEIN L29 2238
46 3OW2 23 U 50S ribosomal protein L29P 2238
47 3CXC 24 U RIBOSOMAL PROTEIN L29 2238
48 1QVG 24 U 50S ribosomal protein L29P 2238
49 3CME 22 V 50S ribosomal protein L29P 2238
50 2QEX 23 V 50S ribosomal protein L29P 2238
51 1KC8 23 W RIBOSOMAL PROTEIN L29 2238
52 1N8R 23 W 50S ribosomal protein L29P 2238
53 1Q81 24 W 50S ribosomal protein L29P 2238
54 1Q82 24 W 50S ribosomal protein L29P 2238
55 1QVF 24 U 50S ribosomal protein L29P 2238
56 1NJI 23 W 50S ribosomal protein L29P 2238
57 1K73 23 W RIBOSOMAL PROTEIN L29 2238
58 1K9M 23 W RIBOSOMAL PROTEIN L29 2238
59 1KD1 23 W RIBOSOMAL PROTEIN L29 2238
60 3I55 23 V 50S ribosomal protein L29P 2238
61 1K8A 23 W RIBOSOMAL PROTEIN L29 2238
62 1Q86 24 W 50S ribosomal protein L29P 2238
63 1M1K 23 W RIBOSOMAL PROTEIN L29 2238
64 3G4S 23 V 50S ribosomal protein L29P 2238
65 1W2B 26 U 50S RIBOSOMAL PROTEIN L24E 2238
66 2QA4 24 V 50S ribosomal protein L29P 2238
67 1Q7Y 24 W 50S ribosomal protein L29P 2238
68 4V4P 22 AW 50S ribosomal protein L29 274
69 4V4R 47 B2 50S ribosomal protein L29 274
70 4V4S 47 B2 50S ribosomal protein L29 274
71 4V4T 46 B2 50S ribosomal protein L29 274
72 4ADX 32 V RPL29 145262
73 1ML5 44 w 50S RIBOSOMAL PROTEIN L29 562
74 4V42 46 BW 50S RIBOSOMAL PROTEIN L29 274