Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 634
95 % 35 68 774 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 805
70 % 35 68 856
50 % 35 213 201
40 % 45 644 23
30 % 45 644 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49998
95 % 1 1 41428
90 % 1 1 39426
70 % 35 68 857
50 % 35 212 202
40 % 35 212 221
30 % 35 212 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 572
95 % 35 74 709 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 733
70 % 35 74 777
50 % 35 74 832
40 % 35 210 222
30 % 35 210 243
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 563
95 % 35 74 695 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 720
70 % 35 74 766
50 % 35 76 796
40 % 35 76 826
30 % 35 79 800
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 648
95 % 35 68 790 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 822
70 % 35 68 874
50 % 35 70 880
40 % 35 70 904
30 % 35 70 896
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2958
95 % 35 68 795 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 827
70 % 35 68 877
50 % 35 68 928
40 % 35 72 877
30 % 35 72 881
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 635
95 % 35 68 775 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 806
70 % 35 68 858
50 % 35 70 891
40 % 35 70 920
30 % 35 71 891
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 662
95 % 35 68 780 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 812
70 % 35 68 863
50 % 35 68 918
40 % 35 68 943
30 % 35 210 242
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 575
95 % 35 74 710 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 736
70 % 35 74 783
50 % 35 77 785
40 % 44 495 39
30 % 44 495 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 568
95 % 35 74 702 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 726
70 % 35 74 771
50 % 35 219 200
40 % 35 220 214
30 % 35 220 236
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 607
95 % 33 70 745 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 777
70 % 33 70 820
50 % 33 70 881
40 % 33 70 905
30 % 33 70 898
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 569
95 % 35 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 727
70 % 35 74 772
50 % 35 74 824
40 % 44 450 50
30 % 44 476 63
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 640
95 % 35 68 781 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 813
70 % 35 68 864
50 % 35 68 919
40 % 35 70 910
30 % 35 71 890
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 636
95 % 35 68 791 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 823
70 % 35 68 875
50 % 35 68 926
40 % 35 68 950
30 % 35 70 906
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60451
95 % 3 5 15786 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15449
70 % 3 5 14387
50 % 3 5 12706
40 % 3 5 11381
30 % 3 5 9687
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2862
95 % 3 21 3205 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3263
70 % 3 21 3212
50 % 7 30 2189
40 % 7 162 282
30 % 9 166 290
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 649
95 % 35 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 807
70 % 35 68 859
50 % 35 69 894
40 % 35 69 924
30 % 35 69 912
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60450
95 % 35 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 816
70 % 35 68 868
50 % 35 205 207
40 % 35 205 226
30 % 35 205 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 633
95 % 35 68 773 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 804
70 % 35 68 855
50 % 35 68 911
40 % 35 200 235
30 % 35 200 251
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 645
95 % 35 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 820
70 % 35 68 852
50 % 35 68 924
40 % 35 210 225
30 % 45 633 39
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2313
95 % 35 68 789 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 821
70 % 35 68 872
50 % 35 203 209
40 % 35 203 230
30 % 35 203 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62866
95 % 35 74 707 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 731
70 % 35 74 775
50 % 35 74 831
40 % 35 218 216
30 % 35 218 237
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 919
95 % 35 74 694 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 719
70 % 35 74 765
50 % 35 74 816
40 % 35 76 825
30 % 36 78 810
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 571
95 % 35 74 705 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 730
70 % 35 74 774
50 % 35 74 830
40 % 36 212 220
30 % 36 212 239
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2877
95 % 3 21 3219 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 803
70 % 35 68 853
50 % 51 108 405
40 % 58 133 322
30 % 72 290 156
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62863
95 % 1 1 51226
90 % 1 7 11687
70 % 3 27 2509
50 % 35 74 817
40 % 35 79 792
30 % 35 79 799
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 567
95 % 35 74 700 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 716
70 % 35 74 762
50 % 35 74 821
40 % 36 78 813
30 % 36 78 813

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CC7 21 U 50S ribosomal protein L24e 2238
20 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
21 3CCE 21 U 50S ribosomal protein L24e 2238
22 3CPW 22 T 50S ribosomal protein L24e 2238
23 3CCU 21 U 50S ribosomal protein L24e 2238
24 1VQ6 24 U 50S ribosomal protein L24E 2238
25 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
26 3CCL 21 U 50S ribosomal protein L24e 2238
27 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
28 1YJ9 23 U 50S ribosomal protein L24E 2238
29 3CD6 21 U 50S ribosomal protein L24e 2238
30 3CCV 21 U 50S ribosomal protein L24e 2238
31 3CC4 21 U 50S ribosomal protein L24e 2238
32 2OTL 22 U 50S ribosomal protein L24e 2238
33 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
34 1VQ4 23 U 50S ribosomal protein L24E 2238
35 1YJN 23 U 50S ribosomal protein L24E 2238
36 3CMA 21 U 50S ribosomal protein L24e 2238
37 3CCS 21 U 50S ribosomal protein L24e 2238
38 3CCQ 21 U 50S ribosomal protein L24e 2238
39 3I56 21 U 50S ribosomal protein L24e 2238
40 3CCR 21 U 50S ribosomal protein L24e 2238
41 2OTJ 22 U 50S ribosomal protein L24e 2238
42 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
43 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
44 1QVG 23 T 50S ribosomal protein L24E 2238
45 3CME 21 U 50S ribosomal protein L24e 2238
46 2QEX 22 U 50S ribosomal protein L24e 2238
47 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
48 1N8R 22 V 50S ribosomal protein L24E 2238
49 1Q81 23 V 50S ribosomal protein L24E 2238
50 1Q82 23 V 50S ribosomal protein L24E 2238
51 1QVF 23 T 50S ribosomal protein L24E 2238
52 1NJI 22 V 50S ribosomal protein L24E 2238
53 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
54 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
55 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
56 3I55 22 U 50S ribosomal protein L24e 2238
57 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
58 1Q86 23 V 50S ribosomal protein L24E 2238
59 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
60 3CCJ 21 U 50S ribosomal protein L24e 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274