Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 847
95 % 35 68 677 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 707
70 % 35 68 762
50 % 35 178 202
40 % 43 533 20
30 % 43 533 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60212
95 % 1 1 42003
90 % 1 1 39940
70 % 35 68 752
50 % 35 174 207
40 % 35 174 230
30 % 35 174 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 432
95 % 35 74 603 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 632
70 % 35 74 670
50 % 35 74 717
40 % 35 74 750
30 % 42 513 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 430
95 % 35 74 601 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 630
70 % 35 74 667
50 % 35 76 689
40 % 35 76 723
30 % 35 79 688
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 490
95 % 35 68 678 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 709
70 % 35 68 764
50 % 35 70 775
40 % 35 70 807
30 % 35 70 799
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2230
95 % 35 68 675 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 704
70 % 35 68 759
50 % 35 68 806
40 % 35 72 778
30 % 35 72 771
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 492
95 % 35 68 682 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 713
70 % 35 68 768
50 % 35 70 776
40 % 35 70 808
30 % 35 71 784
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 507
95 % 35 68 673 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 702
70 % 35 68 756
50 % 35 68 803
40 % 35 68 837
30 % 35 177 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 436
95 % 35 74 608 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 637
70 % 35 74 679
50 % 35 76 693
40 % 35 78 701
30 % 42 418 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 435
95 % 35 74 607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 636
70 % 35 74 676
50 % 35 182 199
40 % 35 182 218
30 % 35 182 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 464
95 % 33 70 653 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 33 70 679
70 % 33 70 734
50 % 33 70 780
40 % 33 70 813
30 % 33 70 804
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 437
95 % 35 74 609
90 % 35 74 638
70 % 35 74 680
50 % 35 74 725
40 % 42 382 58
30 % 42 408 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 488
95 % 35 68 674 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 703
70 % 35 68 757
50 % 35 68 804
40 % 35 70 804
30 % 35 71 782
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 494
95 % 35 68 684 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 715
70 % 35 68 770
50 % 35 68 812
40 % 35 68 844
30 % 35 68 831
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63582
95 % 3 5 14282 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14011
70 % 3 5 13147
50 % 3 5 11700
40 % 3 5 10610
30 % 3 5 9202
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69899
95 % 1 1 48458
90 % 1 1 46025
70 % 3 21 2919
50 % 7 30 1941
40 % 7 131 298
30 % 26 154 266
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 496
95 % 35 68 687 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 718
70 % 35 68 773
50 % 35 69 793
40 % 35 69 827
30 % 35 69 818
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71316
95 % 35 68 688 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 719
70 % 35 68 774
50 % 35 175 203
40 % 35 175 226
30 % 35 175 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 493
95 % 35 68 683 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 714
70 % 35 68 769
50 % 35 68 811
40 % 35 68 843
30 % 35 171 240
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 487
95 % 35 68 672 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 700
70 % 35 68 754
50 % 35 68 802
40 % 35 176 223
30 % 43 524 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2213
95 % 35 68 670 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 698
70 % 35 68 751
50 % 35 173 206
40 % 35 175 225
30 % 35 175 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53390
95 % 35 74 593 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 624
70 % 35 74 663
50 % 35 74 711
40 % 35 182 216
30 % 35 182 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10091
95 % 35 74 597 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 628
70 % 35 74 665
50 % 35 74 713
40 % 35 76 721
30 % 36 78 695
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 431
95 % 35 74 602 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 631
70 % 35 74 668
50 % 35 74 715
40 % 36 182 217
30 % 36 182 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2243
95 % 3 21 2884 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 708
70 % 35 68 763
50 % 50 105 339
40 % 57 123 283
30 % 57 125 290
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62483
95 % 1 1 43266
90 % 1 7 10181
70 % 3 27 2179
50 % 35 74 716
40 % 35 79 692
30 % 35 79 690
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 433
95 % 35 74 604 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 633
70 % 35 74 673
50 % 35 74 721
40 % 36 77 714
30 % 36 78 700

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CC7 21 U 50S ribosomal protein L24e 2238
20 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
21 3CCE 21 U 50S ribosomal protein L24e 2238
22 3CPW 22 T 50S ribosomal protein L24e 2238
23 3CCU 21 U 50S ribosomal protein L24e 2238
24 1VQ6 24 U 50S ribosomal protein L24E 2238
25 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
26 3CCL 21 U 50S ribosomal protein L24e 2238
27 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
28 1YJ9 23 U 50S ribosomal protein L24E 2238
29 3CD6 21 U 50S ribosomal protein L24e 2238
30 3CCV 21 U 50S ribosomal protein L24e 2238
31 3CC4 21 U 50S ribosomal protein L24e 2238
32 2OTL 22 U 50S ribosomal protein L24e 2238
33 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
34 1VQ4 23 U 50S ribosomal protein L24E 2238
35 1YJN 23 U 50S ribosomal protein L24E 2238
36 3CMA 21 U 50S ribosomal protein L24e 2238
37 3CCS 21 U 50S ribosomal protein L24e 2238
38 3CCQ 21 U 50S ribosomal protein L24e 2238
39 3I56 21 U 50S ribosomal protein L24e 2238
40 3CCR 21 U 50S ribosomal protein L24e 2238
41 2OTJ 22 U 50S ribosomal protein L24e 2238
42 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
43 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
44 1QVG 23 T 50S ribosomal protein L24E 2238
45 3CME 21 U 50S ribosomal protein L24e 2238
46 2QEX 22 U 50S ribosomal protein L24e 2238
47 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
48 1N8R 22 V 50S ribosomal protein L24E 2238
49 1Q81 23 V 50S ribosomal protein L24E 2238
50 1Q82 23 V 50S ribosomal protein L24E 2238
51 1QVF 23 T 50S ribosomal protein L24E 2238
52 1NJI 22 V 50S ribosomal protein L24E 2238
53 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
54 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
55 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
56 3I55 22 U 50S ribosomal protein L24e 2238
57 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
58 1Q86 23 V 50S ribosomal protein L24E 2238
59 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
60 3CCJ 21 U 50S ribosomal protein L24e 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274