Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 804
95 % 36 68 636
90 % 36 68 663
70 % 36 68 705
50 % 36 174 198
40 % 36 174 217
30 % 44 506 29
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58062
95 % 1 1 40478
90 % 1 1 38552
70 % 36 68 697
50 % 36 170 205
40 % 36 170 227
30 % 36 170 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 405
95 % 36 74 566
90 % 36 74 594
70 % 36 74 625
50 % 36 74 673
40 % 36 74 712
30 % 43 488 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 403
95 % 36 74 564
90 % 36 74 592
70 % 36 74 622
50 % 36 76 651
40 % 36 76 693
30 % 36 79 665
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 637
90 % 36 68 665
70 % 36 68 707
50 % 36 70 729
40 % 36 70 766
30 % 36 70 766
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2129
95 % 36 68 635
90 % 36 68 661
70 % 36 68 703
50 % 36 68 755
40 % 36 72 738
30 % 36 72 737
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 454
95 % 36 68 640
90 % 36 68 667
70 % 36 68 711
50 % 36 70 730
40 % 36 70 767
30 % 36 71 750
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 463
95 % 36 68 633
90 % 36 68 659
70 % 36 68 700
50 % 36 68 752
40 % 36 68 787
30 % 36 173 226
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 571
90 % 36 74 598
70 % 36 74 631
50 % 36 76 654
40 % 36 78 670
30 % 43 397 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 409
95 % 36 74 569
90 % 36 74 597
70 % 36 74 630
50 % 36 178 192
40 % 36 178 208
30 % 36 178 221
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 434
95 % 34 70 615
90 % 34 70 641
70 % 34 70 681
50 % 34 70 731
40 % 34 70 769
30 % 34 70 768
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 572
90 % 36 74 599
70 % 36 74 632
50 % 36 74 678
40 % 36 74 715
30 % 36 74 716
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 634
90 % 36 68 660
70 % 36 68 701
50 % 36 68 753
40 % 36 70 763
30 % 36 71 747
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 456
95 % 36 68 642
90 % 36 68 669
70 % 36 68 713
50 % 36 68 760
40 % 36 68 792
30 % 36 68 789
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61371
95 % 3 5 13716
90 % 3 5 13469
70 % 3 5 12638
50 % 3 5 11301
40 % 3 5 10255
30 % 3 5 8904
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67630
95 % 1 1 46877
90 % 1 1 44596
70 % 3 21 2800
50 % 7 30 1872
40 % 7 127 292
30 % 26 150 263
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 457
95 % 36 68 643
90 % 36 68 670
70 % 36 68 716
50 % 36 69 739
40 % 36 69 780
30 % 36 69 779
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69026
95 % 36 68 644
90 % 36 68 671
70 % 36 68 717
50 % 36 171 201
40 % 36 171 224
30 % 36 171 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 455
95 % 36 68 641
90 % 36 68 668
70 % 36 68 712
50 % 36 68 759
40 % 36 68 791
30 % 36 167 238
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 449
95 % 36 68 632
90 % 36 68 658
70 % 36 68 699
50 % 36 68 751
40 % 36 172 221
30 % 44 497 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2113
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 169 204
40 % 36 171 223
30 % 36 171 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51400
95 % 36 74 555
90 % 36 74 585
70 % 36 74 617
50 % 36 74 667
40 % 36 178 205
30 % 36 178 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9669
95 % 36 74 559
90 % 36 74 589
70 % 36 74 621
50 % 36 74 669
40 % 36 76 691
30 % 37 78 674
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 404
95 % 36 74 565
90 % 36 74 593
70 % 36 74 623
50 % 36 74 671
40 % 37 178 207
30 % 37 178 220
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2140
95 % 3 21 2771
90 % 36 68 664
70 % 36 68 706
50 % 51 105 311
40 % 58 120 281
30 % 58 122 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60293
95 % 1 1 41719
90 % 1 7 9766
70 % 3 27 2080
50 % 36 74 672
40 % 36 79 658
30 % 36 79 668
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 406
95 % 36 74 567
90 % 36 74 595
70 % 36 74 628
50 % 36 74 677
40 % 37 77 683
30 % 37 78 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CCJ 21 U 50S ribosomal protein L24e 2238
20 3CC7 21 U 50S ribosomal protein L24e 2238
21 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
22 3CCE 21 U 50S ribosomal protein L24e 2238
23 3CPW 22 T 50S ribosomal protein L24e 2238
24 3CCU 21 U 50S ribosomal protein L24e 2238
25 1VQ6 24 U 50S ribosomal protein L24E 2238
26 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
27 3CCL 21 U 50S ribosomal protein L24e 2238
28 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
29 1YJ9 23 U 50S ribosomal protein L24E 2238
30 3CD6 21 U 50S ribosomal protein L24e 2238
31 3CCV 21 U 50S ribosomal protein L24e 2238
32 3CC4 21 U 50S ribosomal protein L24e 2238
33 2OTL 22 U 50S ribosomal protein L24e 2238
34 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
35 1VQ4 23 U 50S ribosomal protein L24E 2238
36 1YJN 23 U 50S ribosomal protein L24E 2238
37 3CMA 21 U 50S ribosomal protein L24e 2238
38 3CCS 21 U 50S ribosomal protein L24e 2238
39 3CCQ 21 U 50S ribosomal protein L24e 2238
40 3I56 21 U 50S ribosomal protein L24e 2238
41 3CCR 21 U 50S ribosomal protein L24e 2238
42 2OTJ 22 U 50S ribosomal protein L24e 2238
43 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
44 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
45 1QVG 23 T 50S ribosomal protein L24E 2238
46 3CME 21 U 50S ribosomal protein L24e 2238
47 2QEX 22 U 50S ribosomal protein L24e 2238
48 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
49 1N8R 22 V 50S ribosomal protein L24E 2238
50 1Q81 23 V 50S ribosomal protein L24E 2238
51 1Q82 23 V 50S ribosomal protein L24E 2238
52 1QVF 23 T 50S ribosomal protein L24E 2238
53 1NJI 22 V 50S ribosomal protein L24E 2238
54 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
55 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
56 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
57 3I55 22 U 50S ribosomal protein L24e 2238
58 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
59 1Q86 23 V 50S ribosomal protein L24E 2238
60 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274