Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 595
95 % 35 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 756
70 % 35 68 804
50 % 35 199 202
40 % 45 595 21
30 % 45 595 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48037
95 % 1 1 39865
90 % 1 1 37985
70 % 35 68 805
50 % 35 198 205
40 % 35 198 222
30 % 35 198 238
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 526
95 % 35 74 660 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 684
70 % 35 74 727
50 % 35 74 790
40 % 35 196 223
30 % 35 196 239
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 518
95 % 35 74 646 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 672
70 % 35 74 715
50 % 35 76 761
40 % 35 76 795
30 % 35 79 763
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 608
95 % 35 68 750 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 773
70 % 35 68 821
50 % 35 70 842
40 % 35 70 875
30 % 35 70 862
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2804
95 % 35 68 753 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 776
70 % 35 68 824
50 % 35 68 882
40 % 35 72 840
30 % 35 72 842
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 596
95 % 35 68 733 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 806
50 % 35 70 851
40 % 35 70 882
30 % 35 71 856
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 624
95 % 35 68 740 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 812
50 % 35 68 871
40 % 35 68 896
30 % 35 196 240
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 531
95 % 35 74 662 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 686
70 % 35 74 731
50 % 35 77 751
40 % 44 459 45
30 % 44 459 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 522
95 % 35 74 653 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 677
70 % 35 74 721
50 % 35 205 197
40 % 35 206 212
30 % 35 206 230
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 569
95 % 33 70 703 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 728
70 % 33 70 774
50 % 33 70 843
40 % 33 70 869
30 % 33 70 864
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 523
95 % 35 74 654 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 678
70 % 35 74 722
50 % 35 74 786
40 % 44 419 52
30 % 44 445 66
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 603
95 % 35 68 741 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 764
70 % 35 68 813
50 % 35 68 872
40 % 35 70 873
30 % 35 71 855
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 609
95 % 35 68 751 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 774
70 % 35 68 822
50 % 35 68 880
40 % 35 68 903
30 % 35 70 868
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58244
95 % 3 5 15050 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14739
70 % 3 5 13787
50 % 3 5 12201
40 % 3 5 10943
30 % 3 5 9311
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2707
95 % 3 21 3046
90 % 3 21 3094
70 % 3 21 3040
50 % 7 30 2115
40 % 7 148 286
30 % 9 152 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 611
95 % 35 68 734 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 758
70 % 35 68 807
50 % 35 69 853
40 % 35 69 884
30 % 35 69 871
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58243
95 % 35 68 744 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 767
70 % 35 68 816
50 % 35 191 207
40 % 35 191 228
30 % 35 191 245
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 594
95 % 35 68 731 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 755
70 % 35 68 803
50 % 35 68 865
40 % 35 186 235
30 % 35 186 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 607
95 % 35 68 749 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 771
70 % 35 68 801
50 % 35 68 877
40 % 35 196 224
30 % 45 584 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 21 2726
95 % 35 68 748 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 770
70 % 35 68 819
50 % 35 189 208
40 % 35 189 231
30 % 35 189 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60554
95 % 35 74 658 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 682
70 % 35 74 725
50 % 35 74 789
40 % 35 204 214
30 % 35 204 231
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 855
95 % 35 74 650 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 675
70 % 35 74 717
50 % 35 74 781
40 % 35 76 798
30 % 36 78 775
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 524
95 % 35 74 656 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 681
70 % 35 74 724
50 % 35 74 788
40 % 36 198 220
30 % 36 198 236
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2725
95 % 3 21 3063 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 754
70 % 35 68 802
50 % 51 107 393
40 % 58 128 309
30 % 72 271 153
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60551
95 % 1 1 49403
90 % 1 7 11008
70 % 3 27 2394
50 % 35 74 783
40 % 35 79 756
30 % 35 79 766
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 521
95 % 35 74 651 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 670
70 % 35 74 714
50 % 35 74 782
40 % 36 78 781
30 % 36 78 777

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CC7 21 U 50S ribosomal protein L24e 2238
20 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
21 3CCE 21 U 50S ribosomal protein L24e 2238
22 3CPW 22 T 50S ribosomal protein L24e 2238
23 3CCU 21 U 50S ribosomal protein L24e 2238
24 1VQ6 24 U 50S ribosomal protein L24E 2238
25 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
26 3CCL 21 U 50S ribosomal protein L24e 2238
27 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
28 1YJ9 23 U 50S ribosomal protein L24E 2238
29 3CD6 21 U 50S ribosomal protein L24e 2238
30 3CCV 21 U 50S ribosomal protein L24e 2238
31 3CC4 21 U 50S ribosomal protein L24e 2238
32 2OTL 22 U 50S ribosomal protein L24e 2238
33 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
34 1VQ4 23 U 50S ribosomal protein L24E 2238
35 1YJN 23 U 50S ribosomal protein L24E 2238
36 3CMA 21 U 50S ribosomal protein L24e 2238
37 3CCS 21 U 50S ribosomal protein L24e 2238
38 3CCQ 21 U 50S ribosomal protein L24e 2238
39 3I56 21 U 50S ribosomal protein L24e 2238
40 3CCR 21 U 50S ribosomal protein L24e 2238
41 2OTJ 22 U 50S ribosomal protein L24e 2238
42 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
43 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
44 1QVG 23 T 50S ribosomal protein L24E 2238
45 3CME 21 U 50S ribosomal protein L24e 2238
46 2QEX 22 U 50S ribosomal protein L24e 2238
47 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
48 1N8R 22 V 50S ribosomal protein L24E 2238
49 1Q81 23 V 50S ribosomal protein L24E 2238
50 1Q82 23 V 50S ribosomal protein L24E 2238
51 1QVF 23 T 50S ribosomal protein L24E 2238
52 1NJI 22 V 50S ribosomal protein L24E 2238
53 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
54 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
55 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
56 3I55 22 U 50S ribosomal protein L24e 2238
57 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
58 1Q86 23 V 50S ribosomal protein L24E 2238
59 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
60 3CCJ 21 U 50S ribosomal protein L24e 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274