Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 751
95 % 36 68 531
90 % 36 68 559
70 % 36 68 612
50 % 36 144 216
40 % 36 144 244
30 % 44 431 32
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54768
95 % 1 1 38234
90 % 1 1 36427
70 % 36 68 606
50 % 36 139 229
40 % 36 139 258
30 % 36 139 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 465
90 % 36 74 492
70 % 36 74 537
50 % 36 74 626
40 % 36 74 669
30 % 43 420 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 463
90 % 36 74 490
70 % 36 74 534
50 % 36 76 605
40 % 36 76 647
30 % 36 78 629
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 533
90 % 36 68 562
70 % 36 68 614
50 % 36 70 677
40 % 36 70 718
30 % 36 70 725
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1955
95 % 36 68 530
90 % 36 68 558
70 % 36 68 611
50 % 36 68 705
40 % 36 70 716
30 % 36 71 708
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 534
90 % 36 68 564
70 % 36 68 616
50 % 36 70 679
40 % 36 70 720
30 % 36 71 711
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 369
95 % 36 68 528
90 % 36 68 556
70 % 36 68 609
50 % 36 68 702
40 % 36 68 737
30 % 36 143 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 76 607
40 % 36 78 623
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 148 213
40 % 36 148 239
30 % 36 148 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 345
95 % 34 70 511
90 % 34 70 537
70 % 34 70 588
50 % 34 70 680
40 % 34 70 721
30 % 34 70 726
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 472
90 % 36 74 500
70 % 36 74 545
50 % 36 74 633
40 % 36 74 674
30 % 36 74 672
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 529
90 % 36 68 557
70 % 36 68 610
50 % 36 68 703
40 % 36 70 715
30 % 36 71 707
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 536
90 % 36 68 566
70 % 36 68 618
50 % 36 68 707
40 % 36 68 741
30 % 36 68 745
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57932
95 % 3 5 12932
90 % 3 5 12692
70 % 3 5 11952
50 % 3 5 10709
40 % 3 5 9756
30 % 3 5 8490
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63949
95 % 1 1 44378
90 % 1 1 42283
70 % 3 21 2599
50 % 7 30 1742
40 % 7 97 359
30 % 26 120 315
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 538
90 % 36 68 568
70 % 36 68 620
50 % 36 69 693
40 % 36 69 731
30 % 36 69 739
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65294
95 % 36 68 540
90 % 36 68 569
70 % 36 68 621
50 % 36 141 224
40 % 36 141 255
30 % 36 141 265
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 535
90 % 36 68 565
70 % 36 68 617
50 % 36 68 706
40 % 36 68 740
30 % 36 138 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 527
90 % 36 68 555
70 % 36 68 608
50 % 36 68 701
40 % 36 143 246
30 % 44 426 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1931
95 % 36 68 525
90 % 36 68 553
70 % 36 68 605
50 % 36 139 228
40 % 36 141 254
30 % 36 141 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48444
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 618
40 % 36 148 237
30 % 36 148 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9021
95 % 36 74 458
90 % 36 74 486
70 % 36 74 532
50 % 36 74 621
40 % 36 76 646
30 % 36 77 636
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 464
90 % 36 74 491
70 % 36 74 535
50 % 36 74 624
40 % 37 148 238
30 % 37 148 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1965
95 % 3 21 2548
90 % 36 68 561
70 % 36 68 613
50 % 51 96 348
40 % 58 110 310
30 % 58 112 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56905
95 % 1 1 39423
90 % 1 7 9186
70 % 3 27 1906
50 % 36 74 625
40 % 36 79 609
30 % 36 79 617
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 74 629
40 % 37 77 633
30 % 37 78 632

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CCJ 21 U 50S ribosomal protein L24e 2238
20 3CC7 21 U 50S ribosomal protein L24e 2238
21 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
22 3CCE 21 U 50S ribosomal protein L24e 2238
23 3CPW 22 T 50S ribosomal protein L24e 2238
24 3CCU 21 U 50S ribosomal protein L24e 2238
25 1VQ6 24 U 50S ribosomal protein L24E 2238
26 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
27 3CCL 21 U 50S ribosomal protein L24e 2238
28 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
29 1YJ9 23 U 50S ribosomal protein L24E 2238
30 3CD6 21 U 50S ribosomal protein L24e 2238
31 3CCV 21 U 50S ribosomal protein L24e 2238
32 3CC4 21 U 50S ribosomal protein L24e 2238
33 2OTL 22 U 50S ribosomal protein L24e 2238
34 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
35 1VQ4 23 U 50S ribosomal protein L24E 2238
36 1YJN 23 U 50S ribosomal protein L24E 2238
37 3CMA 21 U 50S ribosomal protein L24e 2238
38 3CCS 21 U 50S ribosomal protein L24e 2238
39 3CCQ 21 U 50S ribosomal protein L24e 2238
40 3I56 21 U 50S ribosomal protein L24e 2238
41 3CCR 21 U 50S ribosomal protein L24e 2238
42 2OTJ 22 U 50S ribosomal protein L24e 2238
43 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
44 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
45 1QVG 23 T 50S ribosomal protein L24E 2238
46 3CME 21 U 50S ribosomal protein L24e 2238
47 2QEX 22 U 50S ribosomal protein L24e 2238
48 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
49 1N8R 22 V 50S ribosomal protein L24E 2238
50 1Q81 23 V 50S ribosomal protein L24E 2238
51 1Q82 23 V 50S ribosomal protein L24E 2238
52 1QVF 23 T 50S ribosomal protein L24E 2238
53 1NJI 22 V 50S ribosomal protein L24E 2238
54 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
55 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
56 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
57 3I55 22 U 50S ribosomal protein L24e 2238
58 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
59 1Q86 23 V 50S ribosomal protein L24E 2238
60 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274