Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 623
95 % 35 68 765 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 792
70 % 35 68 839
50 % 35 206 203
40 % 45 625 23
30 % 45 625 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49397
95 % 1 1 40944
90 % 1 1 38991
70 % 35 68 840
50 % 35 205 206
40 % 35 205 224
30 % 35 205 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 548
95 % 35 74 691 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 714
70 % 35 74 759
50 % 35 74 814
40 % 35 203 226
30 % 35 203 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 678 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 703
70 % 35 74 749
50 % 35 76 786
40 % 35 76 815
30 % 35 79 788
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 638
95 % 35 68 785 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 813
70 % 35 68 859
50 % 35 70 861
40 % 35 70 894
30 % 35 70 880
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2903
95 % 35 68 789 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 817
70 % 35 68 862
50 % 35 68 909
40 % 35 72 861
30 % 35 72 867
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 624
95 % 35 68 766 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 793
70 % 35 68 841
50 % 35 70 872
40 % 35 70 903
30 % 35 71 875
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 651
95 % 35 68 775 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 801
70 % 35 68 848
50 % 35 68 897
40 % 35 68 923
30 % 35 203 243
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 552
95 % 35 74 692 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 717
70 % 35 74 764
50 % 35 77 772
40 % 44 482 42
30 % 44 482 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 545
95 % 35 74 684 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 707
70 % 35 74 753
50 % 35 212 200
40 % 35 213 217
30 % 35 213 235
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 596
95 % 33 70 738 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 766
70 % 33 70 807
50 % 33 70 862
40 % 33 70 886
30 % 33 70 882
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 546
95 % 35 74 685 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 708
70 % 35 74 754
50 % 35 74 809
40 % 44 438 52
30 % 44 464 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 631
95 % 35 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 802
70 % 35 68 849
50 % 35 68 898
40 % 35 70 891
30 % 35 71 874
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 625
95 % 35 68 786 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 814
70 % 35 68 860
50 % 35 68 906
40 % 35 68 930
30 % 35 70 889
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59791
95 % 3 5 15573 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15241
70 % 3 5 14208
50 % 3 5 12548
40 % 3 5 11238
30 % 3 5 9555
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2812
95 % 3 21 3146 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3198
70 % 3 21 3150
50 % 7 30 2154
40 % 7 155 285
30 % 9 159 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 639
95 % 35 68 767 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 794
70 % 35 68 842
50 % 35 69 874
40 % 35 69 906
30 % 35 69 894
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59790
95 % 35 68 779 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 806
70 % 35 68 853
50 % 35 198 210
40 % 35 198 232
30 % 35 198 248
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 622
95 % 35 68 764 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 791
70 % 35 68 838
50 % 35 68 891
40 % 35 193 237
30 % 35 193 253
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 636
95 % 35 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 810
70 % 35 68 836
50 % 35 68 903
40 % 35 203 227
30 % 45 614 41
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2272
95 % 35 68 784 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 811
70 % 35 68 857
50 % 35 196 211
40 % 35 196 234
30 % 35 196 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62197
95 % 35 74 689 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 712
70 % 35 74 757
50 % 35 74 813
40 % 35 211 218
30 % 35 211 236
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 903
95 % 35 74 677 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 702
70 % 35 74 748
50 % 35 74 804
40 % 35 76 814
30 % 36 78 799
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 547
95 % 35 74 687 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 711
70 % 35 74 756
50 % 35 74 812
40 % 36 205 220
30 % 36 205 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2829
95 % 3 21 3162 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 790
70 % 35 68 837
50 % 51 107 409
40 % 58 130 322
30 % 72 280 158
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62194
95 % 1 1 50695
90 % 1 7 11524
70 % 3 27 2463
50 % 35 74 805
40 % 35 79 776
30 % 35 79 787
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 544
95 % 35 74 682 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 699
70 % 35 74 744
50 % 35 74 807
40 % 36 78 798
30 % 36 78 802

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CC7 21 U 50S ribosomal protein L24e 2238
20 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
21 3CCE 21 U 50S ribosomal protein L24e 2238
22 3CPW 22 T 50S ribosomal protein L24e 2238
23 3CCU 21 U 50S ribosomal protein L24e 2238
24 1VQ6 24 U 50S ribosomal protein L24E 2238
25 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
26 3CCL 21 U 50S ribosomal protein L24e 2238
27 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
28 1YJ9 23 U 50S ribosomal protein L24E 2238
29 3CD6 21 U 50S ribosomal protein L24e 2238
30 3CCV 21 U 50S ribosomal protein L24e 2238
31 3CC4 21 U 50S ribosomal protein L24e 2238
32 2OTL 22 U 50S ribosomal protein L24e 2238
33 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
34 1VQ4 23 U 50S ribosomal protein L24E 2238
35 1YJN 23 U 50S ribosomal protein L24E 2238
36 3CMA 21 U 50S ribosomal protein L24e 2238
37 3CCS 21 U 50S ribosomal protein L24e 2238
38 3CCQ 21 U 50S ribosomal protein L24e 2238
39 3I56 21 U 50S ribosomal protein L24e 2238
40 3CCR 21 U 50S ribosomal protein L24e 2238
41 2OTJ 22 U 50S ribosomal protein L24e 2238
42 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
43 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
44 1QVG 23 T 50S ribosomal protein L24E 2238
45 3CME 21 U 50S ribosomal protein L24e 2238
46 2QEX 22 U 50S ribosomal protein L24e 2238
47 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
48 1N8R 22 V 50S ribosomal protein L24E 2238
49 1Q81 23 V 50S ribosomal protein L24E 2238
50 1Q82 23 V 50S ribosomal protein L24E 2238
51 1QVF 23 T 50S ribosomal protein L24E 2238
52 1NJI 22 V 50S ribosomal protein L24E 2238
53 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
54 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
55 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
56 3I55 22 U 50S ribosomal protein L24e 2238
57 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
58 1Q86 23 V 50S ribosomal protein L24E 2238
59 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
60 3CCJ 21 U 50S ribosomal protein L24e 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274