Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 915
95 % 35 68 732 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 814
50 % 35 197 200
40 % 45 580 20
30 % 45 580 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63891
95 % 1 1 44514
90 % 1 1 42220
70 % 35 68 805
50 % 35 196 202
40 % 35 196 215
30 % 35 196 226
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 646 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 672
70 % 35 74 723
50 % 35 74 775
40 % 35 74 814
30 % 44 555 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 466
95 % 35 74 644 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 670
70 % 35 74 719
50 % 35 76 752
40 % 35 76 788
30 % 35 79 747
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 541
95 % 35 68 734 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 765
70 % 35 68 817
50 % 35 70 825
40 % 35 70 865
30 % 35 70 850
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2412
95 % 35 68 731 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 761
70 % 35 68 813
50 % 35 68 856
40 % 35 72 835
30 % 35 72 828
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 543
95 % 35 68 736 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 767
70 % 35 68 819
50 % 35 70 826
40 % 35 70 866
30 % 35 71 840
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 554
95 % 35 68 729 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 759
70 % 35 68 810
50 % 35 68 853
40 % 35 68 893
30 % 35 199 223
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 473
95 % 35 74 650 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 677
70 % 35 74 726
50 % 35 77 745
40 % 35 79 751
30 % 44 446 65
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 472
95 % 35 74 649 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 676
70 % 35 74 725
50 % 35 203 194
40 % 35 204 207
30 % 35 204 217
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 509
95 % 33 70 700 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 727
70 % 33 70 776
50 % 33 70 828
40 % 33 70 868
30 % 33 70 853
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 474
95 % 35 74 651 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 678
70 % 35 74 727
50 % 35 74 779
40 % 44 406 53
30 % 44 432 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 539
95 % 35 68 730 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 760
70 % 35 68 811
50 % 35 68 854
40 % 35 70 864
30 % 35 71 837
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 545
95 % 35 68 738 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 769
70 % 35 68 821
50 % 35 68 861
40 % 35 68 896
30 % 35 68 878
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67463
95 % 3 5 15238 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14956
70 % 3 5 14022
50 % 3 5 12437
40 % 3 5 11264
30 % 3 5 9782
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74078
95 % 1 1 51292
90 % 1 1 48604
70 % 3 21 3109
50 % 7 30 2090
40 % 7 146 270
30 % 26 169 249
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 546
95 % 35 68 739 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 770
70 % 35 68 822
50 % 35 69 840
40 % 35 69 881
30 % 35 69 865
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75558
95 % 35 68 740 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 771
70 % 35 68 823
50 % 35 189 203
40 % 35 189 221
30 % 35 189 232
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 544
95 % 35 68 737 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 768
70 % 35 68 820
50 % 35 68 860
40 % 35 68 895
30 % 35 184 236
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 538
95 % 35 68 728 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 808
50 % 35 68 852
40 % 35 194 217
30 % 45 570 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2394
95 % 35 68 725 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 754
70 % 35 68 803
50 % 35 187 205
40 % 44 557 22
30 % 44 557 39
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56633
95 % 35 74 635 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 664
70 % 35 74 714
50 % 35 74 767
40 % 35 202 209
30 % 35 202 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10819
95 % 35 74 638 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 667
70 % 35 74 716
50 % 35 74 769
40 % 35 76 783
30 % 36 78 760
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 467
95 % 35 74 645 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 671
70 % 35 74 720
50 % 35 74 772
40 % 36 196 214
30 % 36 196 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2424
95 % 3 21 3091 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 764
70 % 35 68 816
50 % 51 107 387
40 % 58 128 284
30 % 58 130 291
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66283
95 % 1 1 45845
90 % 1 7 10883
70 % 3 27 2339
50 % 35 74 773
40 % 35 79 750
30 % 35 79 749
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 470
95 % 35 74 647
90 % 35 74 673
70 % 35 74 724
50 % 35 74 778
40 % 36 77 775
30 % 36 78 766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CC7 21 U 50S ribosomal protein L24e 2238
20 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
21 3CCE 21 U 50S ribosomal protein L24e 2238
22 3CPW 22 T 50S ribosomal protein L24e 2238
23 3CCU 21 U 50S ribosomal protein L24e 2238
24 1VQ6 24 U 50S ribosomal protein L24E 2238
25 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
26 3CCL 21 U 50S ribosomal protein L24e 2238
27 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
28 1YJ9 23 U 50S ribosomal protein L24E 2238
29 3CD6 21 U 50S ribosomal protein L24e 2238
30 3CCV 21 U 50S ribosomal protein L24e 2238
31 3CC4 21 U 50S ribosomal protein L24e 2238
32 2OTL 22 U 50S ribosomal protein L24e 2238
33 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
34 1VQ4 23 U 50S ribosomal protein L24E 2238
35 1YJN 23 U 50S ribosomal protein L24E 2238
36 3CMA 21 U 50S ribosomal protein L24e 2238
37 3CCS 21 U 50S ribosomal protein L24e 2238
38 3CCQ 21 U 50S ribosomal protein L24e 2238
39 3I56 21 U 50S ribosomal protein L24e 2238
40 3CCR 21 U 50S ribosomal protein L24e 2238
41 2OTJ 22 U 50S ribosomal protein L24e 2238
42 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
43 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
44 1QVG 23 T 50S ribosomal protein L24E 2238
45 3CME 21 U 50S ribosomal protein L24e 2238
46 2QEX 22 U 50S ribosomal protein L24e 2238
47 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
48 1N8R 22 V 50S ribosomal protein L24E 2238
49 1Q81 23 V 50S ribosomal protein L24E 2238
50 1Q82 23 V 50S ribosomal protein L24E 2238
51 1QVF 23 T 50S ribosomal protein L24E 2238
52 1NJI 22 V 50S ribosomal protein L24E 2238
53 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
54 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
55 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
56 3I55 22 U 50S ribosomal protein L24e 2238
57 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
58 1Q86 23 V 50S ribosomal protein L24E 2238
59 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
60 3CCJ 21 U 50S ribosomal protein L24e 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274