Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 757
95 % 36 68 540
90 % 36 68 568
70 % 36 68 617
50 % 36 145 222
40 % 36 145 248
30 % 44 444 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55536
95 % 1 1 38764
90 % 1 1 36937
70 % 36 68 611
50 % 36 140 233
40 % 36 140 260
30 % 36 140 272
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 504
70 % 36 74 547
50 % 36 74 631
40 % 36 74 677
30 % 43 433 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 473
90 % 36 74 502
70 % 36 74 544
50 % 36 76 610
40 % 36 76 653
30 % 36 78 639
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 619
50 % 36 70 681
40 % 36 70 726
30 % 36 70 732
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1991
95 % 36 68 539
90 % 36 68 567
70 % 36 68 616
50 % 36 68 707
40 % 36 70 723
30 % 36 71 713
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 622
50 % 36 70 683
40 % 36 70 728
30 % 36 71 716
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 374
95 % 36 68 537
90 % 36 68 565
70 % 36 68 614
50 % 36 68 705
40 % 36 68 745
30 % 36 144 259
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 510
70 % 36 74 554
50 % 36 76 613
40 % 36 78 631
30 % 43 371 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 478
90 % 36 74 508
70 % 36 74 552
50 % 36 149 219
40 % 36 149 242
30 % 36 149 253
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 348
95 % 34 70 518
90 % 34 70 545
70 % 34 70 592
50 % 34 70 684
40 % 34 70 729
30 % 34 70 733
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 481
90 % 36 74 511
70 % 36 74 555
50 % 36 74 637
40 % 36 74 682
30 % 36 74 682
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 566
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 712
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 368
95 % 36 68 545
90 % 36 68 575
70 % 36 68 624
50 % 36 68 710
40 % 36 68 749
30 % 36 68 754
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58749
95 % 3 5 13117
90 % 3 5 12880
70 % 3 5 12117
50 % 3 5 10840
40 % 3 5 9867
30 % 3 5 8579
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64836
95 % 1 1 44989
90 % 1 1 42850
70 % 3 21 2636
50 % 7 30 1772
40 % 7 98 369
30 % 26 121 320
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 546
90 % 36 68 576
70 % 36 68 625
50 % 36 69 696
40 % 36 69 739
30 % 36 69 746
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66192
95 % 36 68 547
90 % 36 68 577
70 % 36 68 626
50 % 36 142 228
40 % 36 142 257
30 % 36 142 266
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 544
90 % 36 68 574
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 139 275
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 536
90 % 36 68 564
70 % 36 68 613
50 % 36 68 704
40 % 36 144 250
30 % 44 439 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1968
95 % 36 68 534
90 % 36 68 562
70 % 36 68 610
50 % 36 140 232
40 % 36 142 256
30 % 36 142 264
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49105
95 % 36 74 466
90 % 36 74 496
70 % 36 74 540
50 % 36 74 624
40 % 36 149 237
30 % 36 149 248
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9175
95 % 36 74 469
90 % 36 74 499
70 % 36 74 543
50 % 36 74 627
40 % 36 76 652
30 % 36 77 647
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 474
90 % 36 74 503
70 % 36 74 545
50 % 36 74 629
40 % 37 150 236
30 % 37 150 247
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2000
95 % 3 21 2587
90 % 36 68 569
70 % 36 68 618
50 % 51 98 344
40 % 58 112 314
30 % 58 114 325
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57705
95 % 1 1 39976
90 % 1 7 9334
70 % 3 27 1944
50 % 36 74 630
40 % 36 79 619
30 % 36 79 629
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 550
50 % 36 74 634
40 % 37 77 643
30 % 37 78 642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 23 U 50S ribosomal protein L24e 2238
2 1VQO 23 U 50S ribosomal protein L24E 2238
3 1VQ8 23 U 50S ribosomal protein L24E 2238
4 1S72 23 U 50S ribosomal protein L24E 2238
5 1JJ2 22 T RIBOSOMAL PROTEIN L24E 2238
6 1YHQ 23 U 50S ribosomal protein L24E 2238
7 1VQP 23 U 50S ribosomal protein L24E 2238
8 1VQM 23 U 50S ribosomal protein L24E 2238
9 3CC2 21 U 50S ribosomal protein L24e 2238
10 1VQL 23 U 50S ribosomal protein L24E 2238
11 1VQK 23 U 50S ribosomal protein L24E 2238
12 1VQN 24 U 50S ribosomal protein L24E 2238
13 1YIJ 23 U 50S ribosomal protein L24E 2238
14 1YI2 23 U 50S ribosomal protein L24E 2238
15 1VQ9 23 U 50S ribosomal protein L24E 2238
16 1VQ7 23 U 50S ribosomal protein L24E 2238
17 3CCM 21 U 50S ribosomal protein L24e 2238
18 1VQ5 23 U 50S ribosomal protein L24E 2238
19 3CCJ 21 U 50S ribosomal protein L24e 2238
20 3CC7 21 U 50S ribosomal protein L24e 2238
21 1YIT 27 U 50S RIBOSOMAL PROTEIN L24E 2238
22 3CCE 21 U 50S ribosomal protein L24e 2238
23 3CPW 22 T 50S ribosomal protein L24e 2238
24 3CCU 21 U 50S ribosomal protein L24e 2238
25 1VQ6 24 U 50S ribosomal protein L24E 2238
26 1M90 23 V RIBOSOMAL PROTEIN L24E 2238
27 3CCL 21 U 50S ribosomal protein L24e 2238
28 1YJW 27 U 50S RIBOSOMAL PROTEIN L24E 2238
29 1YJ9 23 U 50S ribosomal protein L24E 2238
30 3CD6 21 U 50S ribosomal protein L24e 2238
31 3CCV 21 U 50S ribosomal protein L24e 2238
32 3CC4 21 U 50S ribosomal protein L24e 2238
33 2OTL 22 U 50S ribosomal protein L24e 2238
34 1FFK 20 R RIBOSOMAL PROTEIN L24E 2238
35 1VQ4 23 U 50S ribosomal protein L24E 2238
36 1YJN 23 U 50S ribosomal protein L24E 2238
37 3CMA 21 U 50S ribosomal protein L24e 2238
38 3CCS 21 U 50S ribosomal protein L24e 2238
39 3CCQ 21 U 50S ribosomal protein L24e 2238
40 3I56 21 U 50S ribosomal protein L24e 2238
41 3CCR 21 U 50S ribosomal protein L24e 2238
42 2OTJ 22 U 50S ribosomal protein L24e 2238
43 1KQS 24 T RIBOSOMAL PROTEIN L24E 2238
44 3CXC 23 T RIBOSOMAL PROTEIN L24E 2238
45 1QVG 23 T 50S ribosomal protein L24E 2238
46 3CME 21 U 50S ribosomal protein L24e 2238
47 2QEX 22 U 50S ribosomal protein L24e 2238
48 1KC8 22 V RIBOSOMAL PROTEIN L24E 2238
49 1N8R 22 V 50S ribosomal protein L24E 2238
50 1Q81 23 V 50S ribosomal protein L24E 2238
51 1Q82 23 V 50S ribosomal protein L24E 2238
52 1QVF 23 T 50S ribosomal protein L24E 2238
53 1NJI 22 V 50S ribosomal protein L24E 2238
54 1K73 22 V RIBOSOMAL PROTEIN L24E 2238
55 1K9M 22 V RIBOSOMAL PROTEIN L24E 2238
56 1KD1 22 V RIBOSOMAL PROTEIN L24E 2238
57 3I55 22 U 50S ribosomal protein L24e 2238
58 1K8A 22 V RIBOSOMAL PROTEIN L24E 2238
59 1Q86 23 V 50S ribosomal protein L24E 2238
60 1M1K 22 V RIBOSOMAL PROTEIN L24E 2238
61 1W2B 25 T 50S RIBOSOMAL PROTEIN L24P 2238
62 2QA4 23 U 50S ribosomal protein L24e 2238
63 1Q7Y 23 V 50S ribosomal protein L24E 2238
64 4V4P 17 AR 50S ribosomal protein L19 274
65 4V4R 39 BT 50S ribosomal protein L19 274
66 4V4S 39 BT 50S ribosomal protein L19 274
67 4V4T 38 BT 50S ribosomal protein L19 274
68 4ADX 31 U RPL24E 145262
69 1ML5 39 r 50S RIBOSOMAL PROTEIN L19 562
70 4V42 41 BR 50S RIBOSOMAL PROTEIN L19 274