Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 749
95 % 36 68 531
90 % 36 68 559
70 % 36 68 612
50 % 36 144 215
40 % 36 144 245
30 % 44 431 32
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54678
95 % 1 1 38174
90 % 1 1 36367
70 % 36 68 606
50 % 36 139 228
40 % 36 139 259
30 % 36 139 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 465
90 % 36 74 492
70 % 36 74 537
50 % 36 74 626
40 % 36 74 670
30 % 43 420 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 463
90 % 36 74 490
70 % 36 74 534
50 % 36 76 604
40 % 36 76 647
30 % 36 78 627
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 533
90 % 36 68 562
70 % 36 68 614
50 % 36 70 677
40 % 36 70 719
30 % 36 70 724
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1948
95 % 36 68 530
90 % 36 68 558
70 % 36 68 611
50 % 36 68 705
40 % 36 70 716
30 % 36 71 707
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 534
90 % 36 68 564
70 % 36 68 616
50 % 36 70 679
40 % 36 70 721
30 % 36 71 710
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 367
95 % 36 68 528
90 % 36 68 556
70 % 36 68 609
50 % 36 68 702
40 % 36 68 738
30 % 36 143 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 76 606
40 % 36 78 622
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 148 213
40 % 36 148 239
30 % 36 148 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 344
95 % 34 70 510
90 % 34 70 536
70 % 34 70 588
50 % 34 70 680
40 % 34 70 722
30 % 34 70 725
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 472
90 % 36 74 500
70 % 36 74 545
50 % 36 74 633
40 % 36 74 675
30 % 36 74 672
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 557
70 % 36 68 610
50 % 36 68 703
40 % 36 70 715
30 % 36 71 706
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 536
90 % 36 68 566
70 % 36 68 618
50 % 36 68 707
40 % 36 68 741
30 % 36 68 744
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57836
95 % 3 5 12901
90 % 3 5 12660
70 % 3 5 11920
50 % 3 5 10681
40 % 3 5 9738
30 % 3 5 8476
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63850
95 % 1 1 44310
90 % 1 1 42217
70 % 3 21 2593
50 % 7 30 1737
40 % 7 97 360
30 % 26 120 314
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 568
70 % 36 68 620
50 % 36 69 693
40 % 36 69 732
30 % 36 69 739
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65195
95 % 36 68 540
90 % 36 68 569
70 % 36 68 621
50 % 36 141 222
40 % 36 141 255
30 % 36 141 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 535
90 % 36 68 565
70 % 36 68 617
50 % 36 68 706
40 % 36 68 740
30 % 36 138 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 527
90 % 36 68 555
70 % 36 68 608
50 % 36 68 701
40 % 36 143 247
30 % 44 426 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1924
95 % 36 68 525
90 % 36 68 553
70 % 36 68 605
50 % 36 139 227
40 % 36 141 254
30 % 36 141 262
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48358
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 618
40 % 36 148 237
30 % 36 148 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8996
95 % 36 74 458
90 % 36 74 486
70 % 36 74 532
50 % 36 74 621
40 % 36 76 646
30 % 36 77 635
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 464
90 % 36 74 491
70 % 36 74 535
50 % 36 74 624
40 % 37 148 238
30 % 37 148 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1958
95 % 3 21 2541
90 % 36 68 561
70 % 36 68 613
50 % 51 96 348
40 % 58 110 309
30 % 58 112 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56812
95 % 1 1 39361
90 % 1 7 9158
70 % 3 27 1900
50 % 36 74 625
40 % 36 79 609
30 % 36 79 616
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 74 629
40 % 37 77 633
30 % 37 78 630

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CCJ 20 T 50S ribosomal protein L24P 2238
20 3CC7 20 T 50S ribosomal protein L24P 2238
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
22 3CCE 20 T 50S ribosomal protein L24P 2238
23 3G6E 21 T 50S ribosomal protein L24P 2238
24 3CPW 21 S 50S ribosomal protein L24P 2238
25 3CCU 20 T 50S ribosomal protein L24P 2238
26 1VQ6 23 T 50S ribosomal protein L24P 2238
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238
28 3CCL 20 T 50S ribosomal protein L24P 2238
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
30 1YJ9 22 T 50S ribosomal protein L24P 2238
31 3CD6 20 T 50S ribosomal protein L24P 2238
32 3CCV 20 T 50S ribosomal protein L24P 2238
33 3CC4 20 T 50S ribosomal protein L24P 2238
34 2OTL 21 T 50S ribosomal protein L24P 2238
35 3G71 21 T 50S ribosomal protein L24P 2238
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
37 1VQ4 22 T 50S ribosomal protein L24P 2238
38 1YJN 22 T 50S ribosomal protein L24P 2238
39 3CMA 20 T 50S ribosomal protein L24P 2238
40 3CCS 20 T 50S ribosomal protein L24P 2238
41 3CCQ 20 T 50S ribosomal protein L24P 2238
42 3I56 20 T 50S ribosomal protein L24P 2238
43 3CCR 20 T 50S ribosomal protein L24P 2238
44 2OTJ 21 T 50S ribosomal protein L24P 2238
45 4V88 62 BY, DY 60S ribosomal protein L26-A 4932
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
47 3OW2 21 S 50S ribosomal protein L24P 2238
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 4932
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
50 1QVG 22 S 50S ribosomal protein L24P 2238
51 3CME 20 T 50S ribosomal protein L24P 2238
52 2QEX 21 T 50S ribosomal protein L24P 2238
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 4932
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 4932
56 1N8R 21 U 50S ribosomal protein L24P 2238
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 4932
58 1Q81 22 U 50S ribosomal protein L24P 2238
59 1Q82 22 U 50S ribosomal protein L24P 2238
60 1QVF 22 S 50S ribosomal protein L24P 2238
61 4U52 62 N6, n6 60S ribosomal protein L26-A 4932
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 4932
63 1NJI 21 U 50S ribosomal protein L24P 2238
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 4932
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 4932
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 4932
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 4932
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 4932
70 4U55 62 N6, n6 60S ribosomal protein L26-A 4932
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
73 3I55 21 T 50S ribosomal protein L24P 2238
74 5I4L 62 N6, n6 60S ribosomal protein L26-A 4932
75 4U51 62 N6, n6 60S ribosomal protein L26-A 4932
76 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
77 4U53 62 N6, n6 60S ribosomal protein L26-A 4932
78 1Q86 22 U 50S ribosomal protein L24P 2238
79 4U50 62 N6, n6 60S ribosomal protein L26-A 4932
80 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
81 3G4S 21 T 50S ribosomal protein L24P 2238
82 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
83 4U56 62 N6, n6 60S ribosomal protein L26-A 4932
84 2QA4 22 T 50S ribosomal protein L24P 2238
85 1Q7Y 22 U 50S ribosomal protein L24P 2238
86 5FCJ 62 N6, n6 60S ribosomal protein L26-A 4932
87 4U4O 62 N6, n6 60S ribosomal protein L26-A 4932
88 4V8P 40 BS, CS, ES, GS RPL26 5911
89 5FCI 62 N6, n6 60S ribosomal protein L26-A 4932
90 5DC3 62 N6, n6 60S ribosomal protein L26-A 4932
91 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932
92 4V4P 20 AU 50S ribosomal protein L24 274
93 4V4R 42 BY 50S ribosomal protein 24 274
94 4V4S 42 BY 50S ribosomal protein 24 274
95 4V4T 41 BY 50S ribosomal protein 24 274
96 5IT7 27 YY KLLA0B05742p 28985
97 3JCT 25 Y 60S ribosomal protein L26-A 4932
98 5GAK 8 a 60S ribosomal protein L26-A 4932
99 5FL8 24 Y 60S ribosomal protein L26-A 4932
100 5APN 27 Y 60S ribosomal protein L26-A 4932
101 5APO 27 Y 60S ribosomal protein L26-A 4932
102 3JBN 66 AZ 60S ribosomal protein uL24 5833
103 3JBO 66 AZ 60S ribosomal protein uL24 5833
104 3JBP 66 AZ 60S ribosomal protein uL24 5833
105 3JAN 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
106 3JAJ 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
107 3JAG 24 Y uL24 9986
108 3JAH 24 Y uL24 9986
109 3JAI 24 Y uL24 9986
110 4UG0 27 LY 60S RIBOSOMAL PROTEIN L26 9606
111 5AJ0 27 AY 60S ribosomal protein L26 9606
112 3J92 24 Y uL24 9986
113 4D67 24 Y 60S RIBOSOMAL PROTEIN L26 9986
114 4D5Y 24 Y 60S RIBOSOMAL PROTEIN UL24 9986
115 4V3P 51 LY 60S ribosomal protein L26 4565
116 3J7O 27 Y Ribosomal protein uL24 9823
117 3J7P 28 Y Ribosomal protein uL24 9823
118 3J7Q 27 Y Ribosomal protein uL24 9823
119 3J7R 27 Y Ribosomal protein uL24 9823
120 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986
121 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986
122 3J79 26 Z 60S ribosomal protein uL24 5833
123 3J77 26 76 60S ribosomal protein L26 4932
124 3J78 26 76 60S ribosomal protein L26 4932
125 3J6X 28 66 60S ribosomal protein L26 4932
126 3J6Y 28 66 60S ribosomal protein L26 4932
127 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986
128 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985
129 4V7F 27 X 60S ribosomal protein L26 4932
130 4V7E 53 CY 60S ribosomal protein L24 4565
131 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
132 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
133 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190
134 4V6W 57 CY 60S ribosomal protein L26 7227
135 4V6X 57 CY 60S ribosomal protein L26 9606
136 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431
137 4V6U 37 BU 50S ribosomal protein L24P 2261
138 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 4932
139 4ADX 30 T RPL24 145262
140 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932
141 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
142 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
143 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565
144 4V7H 45 BU 60S ribosomal protein L26(A) 5541
145 4V5Z 73 Bt 60S Ribosomal protein L26 9612
146 4V4B 40 BU 60S ribosomal protein L26-A 4932
147 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
148 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274