Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 233
40 % 36 138 258
30 % 43 418 37
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54054
95 % 1 1 37756
90 % 1 1 35988
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 458
90 % 36 74 484
70 % 36 74 527
50 % 36 74 603
40 % 36 74 653
30 % 42 407 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 76 579
40 % 36 76 627
30 % 36 78 601
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 707
30 % 36 70 708
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1908
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 704
30 % 36 71 690
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 709
30 % 36 71 693
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 726
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 464
90 % 36 74 490
70 % 36 74 535
50 % 36 76 581
40 % 36 78 599
30 % 42 352 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 710
30 % 34 70 710
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 465
90 % 36 74 491
70 % 36 74 536
50 % 36 74 611
40 % 36 74 661
30 % 36 74 654
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 703
30 % 36 71 689
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 729
30 % 36 68 730
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57181
95 % 3 5 12705
90 % 3 5 12466
70 % 3 5 11738
50 % 3 5 10524
40 % 3 5 9603
30 % 3 5 8365
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63147
95 % 1 1 43834
90 % 1 1 41793
70 % 3 21 2555
50 % 7 30 1717
40 % 7 91 391
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 721
30 % 36 69 724
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64488
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 728
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 413 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1885
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47782
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8867
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 625
30 % 36 77 612
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 457
90 % 36 74 483
70 % 36 74 525
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1920
95 % 3 21 2498
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56164
95 % 1 1 38928
90 % 1 7 9023
70 % 3 27 1875
50 % 36 74 602
40 % 36 79 585
30 % 36 79 591
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 459
90 % 36 74 485
70 % 36 74 530
50 % 36 74 607
40 % 37 77 611
30 % 37 78 605

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CCJ 20 T 50S ribosomal protein L24P 2238
20 3CC7 20 T 50S ribosomal protein L24P 2238
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
22 3CCE 20 T 50S ribosomal protein L24P 2238
23 3G6E 21 T 50S ribosomal protein L24P 2238
24 3CPW 21 S 50S ribosomal protein L24P 2238
25 3CCU 20 T 50S ribosomal protein L24P 2238
26 1VQ6 23 T 50S ribosomal protein L24P 2238
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238
28 3CCL 20 T 50S ribosomal protein L24P 2238
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
30 1YJ9 22 T 50S ribosomal protein L24P 2238
31 3CD6 20 T 50S ribosomal protein L24P 2238
32 3CCV 20 T 50S ribosomal protein L24P 2238
33 3CC4 20 T 50S ribosomal protein L24P 2238
34 2OTL 21 T 50S ribosomal protein L24P 2238
35 3G71 21 T 50S ribosomal protein L24P 2238
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
37 1VQ4 22 T 50S ribosomal protein L24P 2238
38 1YJN 22 T 50S ribosomal protein L24P 2238
39 3CMA 20 T 50S ribosomal protein L24P 2238
40 3CCS 20 T 50S ribosomal protein L24P 2238
41 3CCQ 20 T 50S ribosomal protein L24P 2238
42 3I56 20 T 50S ribosomal protein L24P 2238
43 3CCR 20 T 50S ribosomal protein L24P 2238
44 2OTJ 21 T 50S ribosomal protein L24P 2238
45 4V88 62 BY, DY 60S ribosomal protein L26-A 4932
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
47 3OW2 21 S 50S ribosomal protein L24P 2238
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 4932
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
50 1QVG 22 S 50S ribosomal protein L24P 2238
51 3CME 20 T 50S ribosomal protein L24P 2238
52 2QEX 21 T 50S ribosomal protein L24P 2238
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 4932
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 4932
56 1N8R 21 U 50S ribosomal protein L24P 2238
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 4932
58 1Q81 22 U 50S ribosomal protein L24P 2238
59 1Q82 22 U 50S ribosomal protein L24P 2238
60 1QVF 22 S 50S ribosomal protein L24P 2238
61 4U52 62 N6, n6 60S ribosomal protein L26-A 4932
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 4932
63 1NJI 21 U 50S ribosomal protein L24P 2238
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 4932
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 4932
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 4932
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 4932
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 4932
70 4U55 62 N6, n6 60S ribosomal protein L26-A 4932
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
73 3I55 21 T 50S ribosomal protein L24P 2238
74 4U51 62 N6, n6 60S ribosomal protein L26-A 4932
75 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
76 4U53 62 N6, n6 60S ribosomal protein L26-A 4932
77 1Q86 22 U 50S ribosomal protein L24P 2238
78 4U50 62 N6, n6 60S ribosomal protein L26-A 4932
79 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
80 3G4S 21 T 50S ribosomal protein L24P 2238
81 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
82 4U56 62 N6, n6 60S ribosomal protein L26-A 4932
83 2QA4 22 T 50S ribosomal protein L24P 2238
84 1Q7Y 22 U 50S ribosomal protein L24P 2238
85 4U4O 62 N6, n6 60S ribosomal protein L26-A 4932
86 4V8P 40 BS, CS, ES, GS RPL26 5911
87 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932
88 4V4P 20 AU 50S ribosomal protein L24 274
89 4V4R 42 BY 50S ribosomal protein 24 274
90 4V4S 42 BY 50S ribosomal protein 24 274
91 4V4T 41 BY 50S ribosomal protein 24 274
92 5GAK 8 a 60S ribosomal protein L26-A 4932
93 5FL8 24 Y 60S ribosomal protein L26-A 4932
94 5APN 27 Y 60S ribosomal protein L26-A 4932
95 5APO 27 Y 60S ribosomal protein L26-A 4932
96 3JBN 66 AZ 60S ribosomal protein uL24 5833
97 3JBO 66 AZ 60S ribosomal protein uL24 5833
98 3JBP 66 AZ 60S ribosomal protein uL24 5833
99 3JAN 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
100 3JAJ 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
101 3JAG 24 Y uL24 9986
102 3JAH 24 Y uL24 9986
103 3JAI 24 Y uL24 9986
104 4UG0 27 LY 60S RIBOSOMAL PROTEIN L26 9606
105 5AJ0 27 AY 60S ribosomal protein L26 9606
106 3J92 24 Y uL24 9986
107 4D67 24 Y 60S RIBOSOMAL PROTEIN L26 9986
108 4D5Y 24 Y 60S RIBOSOMAL PROTEIN UL24 9986
109 4V3P 51 LY 60S ribosomal protein L26 4565
110 3J7O 27 Y Ribosomal protein uL24 9823
111 3J7P 28 Y Ribosomal protein uL24 9823
112 3J7Q 27 Y Ribosomal protein uL24 9823
113 3J7R 27 Y Ribosomal protein uL24 9823
114 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986
115 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986
116 3J79 26 Z 60S ribosomal protein uL24 5833
117 3J77 26 76 60S ribosomal protein L26 4932
118 3J78 26 76 60S ribosomal protein L26 4932
119 3J6X 28 66 60S ribosomal protein L26 4932
120 3J6Y 28 66 60S ribosomal protein L26 4932
121 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986
122 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985
123 4V7F 27 X 60S ribosomal protein L26 4932
124 4V7E 53 CY 60S ribosomal protein L24 4565
125 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
126 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
127 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190
128 4V6W 57 CY 60S ribosomal protein L26 7227
129 4V6X 57 CY 60S ribosomal protein L26 9606
130 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431
131 4V6U 37 BU 50S ribosomal protein L24P 2261
132 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 4932
133 4ADX 30 T RPL24 145262
134 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932
135 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
136 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
137 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565
138 4V7H 45 BU 60S ribosomal protein L26(A) 5541
139 4V5Z 73 Bt 60S Ribosomal protein L26 9612
140 4V4B 40 BU 60S ribosomal protein L26-A 4932
141 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
142 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274