Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 44 828
95 % 35 68 664
90 % 35 68 692
70 % 35 68 743
50 % 35 176 200
40 % 35 176 221
30 % 43 511 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59155
95 % 1 1 41219
90 % 1 1 39227
70 % 35 68 735
50 % 35 172 209
40 % 35 172 233
30 % 35 172 237
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 417
95 % 35 74 587
90 % 35 74 618
70 % 35 74 650
50 % 35 74 695
40 % 35 74 734
30 % 42 493 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 415
95 % 35 74 585
90 % 35 74 616
70 % 35 74 647
50 % 35 76 665
40 % 35 76 708
30 % 35 79 677
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 474
95 % 35 68 665
90 % 35 68 694
70 % 35 68 745
50 % 35 70 763
40 % 35 70 798
30 % 35 70 788
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2178
95 % 35 68 663
90 % 35 68 690
70 % 35 68 741
50 % 35 68 793
40 % 35 72 762
30 % 35 72 754
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 475
95 % 35 68 668
90 % 35 68 696
70 % 35 68 748
50 % 35 70 765
40 % 35 70 800
30 % 35 71 770
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 67 488
95 % 35 68 661
90 % 35 68 688
70 % 35 68 738
50 % 35 68 790
40 % 35 68 822
30 % 35 175 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 422
95 % 35 74 591
90 % 35 74 622
70 % 35 74 656
50 % 35 76 669
40 % 35 78 691
30 % 42 400 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 421
95 % 35 74 590
90 % 35 74 621
70 % 35 74 655
50 % 35 180 197
40 % 35 180 216
30 % 35 180 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 70 451
95 % 33 70 635
90 % 33 70 663
70 % 33 70 717
50 % 33 70 766
40 % 33 70 803
30 % 33 70 792
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 423
95 % 35 74 592
90 % 35 74 623
70 % 35 74 657
50 % 35 74 700
40 % 35 74 737
30 % 35 74 729
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 472
95 % 35 68 662
90 % 35 68 689
70 % 35 68 739
50 % 35 68 791
40 % 35 70 795
30 % 35 71 767
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 477
95 % 35 68 670
90 % 35 68 698
70 % 35 68 750
50 % 35 68 796
40 % 35 68 826
30 % 35 68 813
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62504
95 % 3 5 14013
90 % 3 5 13756
70 % 3 5 12900
50 % 3 5 11510
40 % 3 5 10440
30 % 3 5 9050
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68812
95 % 1 1 47669
90 % 1 1 45311
70 % 3 21 2859
50 % 7 30 1914
40 % 7 129 302
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 479
95 % 35 68 673
90 % 35 68 701
70 % 35 68 754
50 % 35 69 778
40 % 35 69 814
30 % 35 69 804
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70221
95 % 35 68 674
90 % 35 68 702
70 % 35 68 755
50 % 35 173 205
40 % 35 173 228
30 % 35 173 234
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 476
95 % 35 68 669
90 % 35 68 697
70 % 35 68 749
50 % 35 68 795
40 % 35 68 825
30 % 35 169 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 68 471
95 % 35 68 660
90 % 35 68 687
70 % 35 68 737
50 % 35 68 789
40 % 35 174 226
30 % 43 502 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2162
95 % 35 68 657
90 % 35 68 684
70 % 35 68 733
50 % 35 171 208
40 % 35 173 227
30 % 35 173 233
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52389
95 % 35 74 575
90 % 35 74 607
70 % 35 74 642
50 % 35 74 688
40 % 35 180 214
30 % 35 180 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9863
95 % 35 74 581
90 % 35 74 614
70 % 35 74 645
50 % 35 74 690
40 % 35 76 706
30 % 36 78 685
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 416
95 % 35 74 586
90 % 35 74 617
70 % 35 74 648
50 % 35 74 693
40 % 36 180 215
30 % 36 180 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2190
95 % 3 21 2831
90 % 35 68 693
70 % 35 68 744
50 % 50 105 322
40 % 57 122 279
30 % 57 124 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61408
95 % 1 1 42472
90 % 1 7 9964
70 % 3 27 2129
50 % 35 74 694
40 % 35 79 678
30 % 35 79 679
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 418
95 % 35 74 588
90 % 35 74 619
70 % 35 74 653
50 % 35 74 699
40 % 36 77 701
30 % 36 78 688

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CC7 20 T 50S ribosomal protein L24P 2238
20 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
21 3CCE 20 T 50S ribosomal protein L24P 2238
22 3G6E 21 T 50S ribosomal protein L24P 2238
23 3CPW 21 S 50S ribosomal protein L24P 2238
24 3CCU 20 T 50S ribosomal protein L24P 2238
25 1VQ6 23 T 50S ribosomal protein L24P 2238
26 1M90 22 U RIBOSOMAL PROTEIN L24 2238
27 3CCL 20 T 50S ribosomal protein L24P 2238
28 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
29 1YJ9 22 T 50S ribosomal protein L24P 2238
30 3CD6 20 T 50S ribosomal protein L24P 2238
31 3CCV 20 T 50S ribosomal protein L24P 2238
32 3CC4 20 T 50S ribosomal protein L24P 2238
33 2OTL 21 T 50S ribosomal protein L24P 2238
34 3G71 21 T 50S ribosomal protein L24P 2238
35 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
36 1VQ4 22 T 50S ribosomal protein L24P 2238
37 1YJN 22 T 50S ribosomal protein L24P 2238
38 3CMA 20 T 50S ribosomal protein L24P 2238
39 3CCS 20 T 50S ribosomal protein L24P 2238
40 3CCQ 20 T 50S ribosomal protein L24P 2238
41 3I56 20 T 50S ribosomal protein L24P 2238
42 3CCR 20 T 50S ribosomal protein L24P 2238
43 2OTJ 21 T 50S ribosomal protein L24P 2238
44 4V88 62 BY, DY 60S ribosomal protein L26-A 4932
45 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
46 3OW2 21 S 50S ribosomal protein L24P 2238
47 4U4R 62 N6, n6 60S ribosomal protein L26-A 4932
48 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
49 1QVG 22 S 50S ribosomal protein L24P 2238
50 3CME 20 T 50S ribosomal protein L24P 2238
51 2QEX 21 T 50S ribosomal protein L24P 2238
52 4U3U 62 N6, n6 60S ribosomal protein L26-A 4932
53 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
54 4U3M 62 N6, n6 60S ribosomal protein L26-A 4932
55 1N8R 21 U 50S ribosomal protein L24P 2238
56 4U3N 62 N6, n6 60S ribosomal protein L26-A 4932
57 1Q81 22 U 50S ribosomal protein L24P 2238
58 1Q82 22 U 50S ribosomal protein L24P 2238
59 1QVF 22 S 50S ribosomal protein L24P 2238
60 4U52 62 N6, n6 60S ribosomal protein L26-A 4932
61 4U4Q 62 N6, n6 60S ribosomal protein L26-A 4932
62 1NJI 21 U 50S ribosomal protein L24P 2238
63 4U6F 62 N6, n6 60S ribosomal protein L26-A 4932
64 4U4U 62 N6, n6 60S ribosomal protein L26-A 4932
65 1K73 21 U RIBOSOMAL PROTEIN L24 2238
66 4U4Z 62 N6, n6 60S ribosomal protein L26-A 4932
67 4U4Y 62 N6, n6 60S ribosomal protein L26-A 4932
68 4U4N 62 N6, n6 60S ribosomal protein L26-A 4932
69 4U55 62 N6, n6 60S ribosomal protein L26-A 4932
70 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
71 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
72 5DAT 62 N6, n6 60S ribosomal protein L26-A 4932
73 3I55 21 T 50S ribosomal protein L24P 2238
74 5I4L 62 N6, n6 60S ribosomal protein L26-A 4932
75 4U51 62 N6, n6 60S ribosomal protein L26-A 4932
76 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
77 4U53 62 N6, n6 60S ribosomal protein L26-A 4932
78 1Q86 22 U 50S ribosomal protein L24P 2238
79 4U50 62 N6, n6 60S ribosomal protein L26-A 4932
80 5LYB 62 N6, n6 60S ribosomal protein L26-A 4932
81 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
82 3G4S 21 T 50S ribosomal protein L24P 2238
83 3CCJ 20 T 50S ribosomal protein L24P 2238
84 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
85 4U56 62 N6, n6 60S ribosomal protein L26-A 4932
86 2QA4 22 T 50S ribosomal protein L24P 2238
87 5TGA 62 N6, n6 60S ribosomal protein L26-A 4932
88 1Q7Y 22 U 50S ribosomal protein L24P 2238
89 5FCJ 62 N6, n6 60S ribosomal protein L26-A 4932
90 4U4O 62 N6, n6 60S ribosomal protein L26-A 4932
91 5DGV 62 N6, n6 60S ribosomal protein L26-A 4932
92 5DGE 62 N6, n6 60S ribosomal protein L26-A 4932
93 4V8P 40 BS, CS, ES, GS RPL26 5911
94 5FCI 62 N6, n6 60S ribosomal protein L26-A 4932
95 5DC3 62 N6, n6 60S ribosomal protein L26-A 4932
96 5DGF 62 N6, n6 60S ribosomal protein L26-A 4932
97 5TGM 62 N6, n6 60S ribosomal protein L26-A 4932
98 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932
99 4V4P 20 AU 50S ribosomal protein L24 274
100 4V4R 42 BY 50S ribosomal protein 24 274
101 4V4S 42 BY 50S ribosomal protein 24 274
102 4V4T 41 BY 50S ribosomal protein 24 274
103 5UMD 26 Z 60S ribosomal protein L26, putative 5833
104 5MC6 51 AK 60S ribosomal protein L26-A 4932
105 5H4P 26 Y 60S ribosomal protein L26-A 4932
106 5M1J 76 Y5 60S ribosomal protein L26-A 4932
107 5LZS 24 Y Uncharacterized protein 9986
108 5LZT 24 Y uL24 9986
109 5LZU 24 Y uL24 9986
110 5LZV 24 Y uL24 9986
111 5LZW 24 Y uL24 9986
112 5LZX 24 Y uL24 9986
113 5LZY 24 Y uL24 9986
114 5LZZ 24 Y uL24 9986
115 5T62 28 l 60S ribosomal protein L26-A 4932
116 5T6R 27 l 60S ribosomal protein L26-A 4932
117 5T5H 23 Z 60S ribosomal protein L26 5693
118 5T2A 24 X uL24 5661
119 5T2C 14 S 60S ribosomal protein L26 9606
120 5LKS 27 LY 60S ribosomal protein L26 9606
121 5JUO 30 DA uL24 (yeast L26) 4932
122 5JUP 30 DA uL24 (yeast L26) 4932
123 5JUS 30 DA uL24 (yeast L26) 4932
124 5JUT 30 DA uL24 (yeast L26) 4932
125 5JUU 30 DA uL24 (yeast L26) 4932
126 5JCS 46 Y 60S ribosomal protein L26-A 4932
127 5IT7 27 YY KLLA0B05742p 28985
128 3JCT 25 Y 60S ribosomal protein L26-A 4932
129 3JCS 31 W ribosomal protein L24 5661
130 5GAK 8 a 60S ribosomal protein L26-A 4932
131 5FL8 24 Y 60S ribosomal protein L26-A 4932
132 5APN 27 Y 60S ribosomal protein L26-A 4932
133 5APO 27 Y 60S ribosomal protein L26-A 4932
134 3JBN 66 AZ 60S ribosomal protein uL24 5833
135 3JBO 66 AZ 60S ribosomal protein uL24 5833
136 3JBP 66 AZ 60S ribosomal protein uL24 5833
137 3JAN 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
138 3JAJ 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
139 3JAG 24 Y uL24 9986
140 3JAH 24 Y uL24 9986
141 3JAI 24 Y uL24 9986
142 4UG0 27 LY 60S RIBOSOMAL PROTEIN L26 9606
143 5AJ0 27 AY 60S ribosomal protein L26 9606
144 3J92 24 Y uL24 9986
145 4D67 24 Y 60S RIBOSOMAL PROTEIN L26 9986
146 4D5Y 24 Y 60S RIBOSOMAL PROTEIN UL24 9986
147 4V3P 51 LY 60S ribosomal protein L26 4565
148 3J7O 27 Y Ribosomal protein uL24 9823
149 3J7P 28 Y Ribosomal protein uL24 9823
150 3J7Q 27 Y Ribosomal protein uL24 9823
151 3J7R 27 Y Ribosomal protein uL24 9823
152 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986
153 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986
154 3J79 26 Z 60S ribosomal protein uL24 5833
155 3J77 26 76 60S ribosomal protein L26 4932
156 3J78 26 76 60S ribosomal protein L26 4932
157 3J6X 28 66 60S ribosomal protein L26 4932
158 3J6Y 28 66 60S ribosomal protein L26 4932
159 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986
160 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985
161 4V7F 27 X 60S ribosomal protein L26 4932
162 4V7E 53 CY 60S ribosomal protein L24 4565
163 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
164 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
165 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190
166 4V6W 57 CY 60S ribosomal protein L26 7227
167 4V6X 57 CY 60S ribosomal protein L26 9606
168 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431
169 4V6U 37 BU 50S ribosomal protein L24P 2261
170 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 4932
171 4ADX 30 T RPL24 145262
172 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932
173 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
174 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
175 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565
176 4V7H 45 BU 60S ribosomal protein L26(A) 5541
177 4V5Z 73 Bt 60S Ribosomal protein L26 9612
178 4V4B 40 BU 60S ribosomal protein L26-A 4932
179 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
180 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274