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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 247 Members. Sequence cutoff: 40% Cluster size: 124 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 22 T 50S ribosomal protein L24P 272569  
2 1VQO 22 T 50S ribosomal protein L24P 2238  
3 1VQ8 22 T 50S ribosomal protein L24P 2238  
4 1S72 22 T 50S ribosomal protein L24P 2238  
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238  
6 1YHQ 22 T 50S ribosomal protein L24P 2238  
7 1VQP 22 T 50S ribosomal protein L24P 2238  
8 1VQM 22 T 50S ribosomal protein L24P 2238  
9 3CC2 20 T 50S ribosomal protein L24P 2238  
10 1VQL 22 T 50S ribosomal protein L24P 2238  
11 1VQK 22 T 50S ribosomal protein L24P 2238  
12 1VQN 23 T 50S ribosomal protein L24P 2238  
13 1YIJ 22 T 50S ribosomal protein L24P 2238  
14 1YI2 22 T 50S ribosomal protein L24P 2238  
15 1VQ9 22 T 50S ribosomal protein L24P 2238  
16 1VQ7 22 T 50S ribosomal protein L24P 2238  
17 3CCM 20 T 50S ribosomal protein L24P 272569  
18 1VQ5 22 T 50S ribosomal protein L24P 2238  
19 3CCJ 20 T 50S ribosomal protein L24P 272569  
20 3CC7 20 T 50S ribosomal protein L24P 2238  
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238  
22 3CCE 20 T 50S ribosomal protein L24P 272569  
23 3G6E 21 T 50S ribosomal protein L24P 2238  
24 3CPW 21 S 50S ribosomal protein L24P 272569  
25 3CCU 20 T 50S ribosomal protein L24P 272569  
26 1VQ6 23 T 50S ribosomal protein L24P 2238  
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238  
28 3CCL 20 T 50S ribosomal protein L24P 272569  
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238  
30 1YJ9 22 T 50S ribosomal protein L24P 2238  
31 3CD6 20 T 50S ribosomal protein L24P 272569  
32 3CCV 20 T 50S ribosomal protein L24P 272569  
33 3CC4 20 T 50S ribosomal protein L24P 272569  
34 2OTL 21 T 50S ribosomal protein L24P 2238  
35 3G71 21 T 50S ribosomal protein L24P 2238  
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238  
37 1VQ4 22 T 50S ribosomal protein L24P 2238  
38 1YJN 22 T 50S ribosomal protein L24P 2238  
39 3CMA 20 T 50S ribosomal protein L24P 2238  
40 3CCS 20 T 50S ribosomal protein L24P 272569  
41 3CCQ 20 T 50S ribosomal protein L24P 272569  
42 3I56 20 T 50S ribosomal protein L24P 2238  
43 3CCR 20 T 50S ribosomal protein L24P 272569  
44 2OTJ 21 T 50S ribosomal protein L24P 2238  
45 4V88 62 BY, DY 60S ribosomal protein L26-A 559292  
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238  
47 3OW2 21 S 50S ribosomal protein L24P 2238  
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 559292  
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238  
50 1QVG 22 S 50S ribosomal protein L24P 2238  
51 3CME 20 T 50S ribosomal protein L24P 2238  
52 2QEX 21 T 50S ribosomal protein L24P 2238  
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 559292  
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238  
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 559292  
56 1N8R 21 U 50S ribosomal protein L24P 2238  
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 559292  
58 1Q81 22 U 50S ribosomal protein L24P 2238  
59 1Q82 22 U 50S ribosomal protein L24P 2238  
60 1QVF 22 S 50S ribosomal protein L24P 2238  
61 4U52 62 N6, n6 60S ribosomal protein L26-A 559292  
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 559292  
63 1NJI 21 U 50S ribosomal protein L24P 2238  
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 559292  
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 559292  
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238  
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 559292  
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 559292  
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 559292  
70 4U55 62 N6, n6 60S ribosomal protein L26-A 559292  
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238  
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238  
73 3I55 21 T 50S ribosomal protein L24P 2238  
74 4U51 62 N6, n6 60S ribosomal protein L26-A 559292  
75 1K8A 21 U RIBOSOMAL PROTEIN L24 2238  
76 4U53 62 N6, n6 60S ribosomal protein L26-A 559292  
77 1Q86 22 U 50S ribosomal protein L24P 2238  
78 4U50 62 N6, n6 60S ribosomal protein L26-A 559292  
79 1M1K 21 U RIBOSOMAL PROTEIN L24 2238  
80 3G4S 21 T 50S ribosomal protein L24P 2238  
81 1W2B 24 S RIBOSOMAL PROTEIN L24 2238  
82 4U56 62 N6, n6 60S ribosomal protein L26-A 559292  
83 2QA4 22 T 50S ribosomal protein L24P 2238  
84 1Q7Y 22 U 50S ribosomal protein L24P 2238  
85 4U4O 62 N6, n6 60S ribosomal protein L26-A 559292  
86 4V8P 40 BS, CS, ES, GS RPL26 5911  
87 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932  
88 4V4P 20 AU 50S ribosomal protein L24 300852  
89 4V4R 42 BY 50S ribosomal protein 24 274  
90 4V4S 42 BY 50S ribosomal protein 24 274  
91 4V4T 41 BY 50S ribosomal protein 24 274  
92 3J7O 27 Y Ribosomal protein uL24 9823  
93 3J7P 28 Y Ribosomal protein uL24 9823  
94 3J7Q 27 Y Ribosomal protein uL24 9823  
95 3J7R 27 Y Ribosomal protein uL24 9823  
96 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986  
97 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986  
98 3J79 26 Z 60S ribosomal protein uL24 36329  
99 3J77 26 76 60S ribosomal protein L26 4932  
100 3J78 26 76 60S ribosomal protein L26 4932  
101 3J6X 28 66 60S ribosomal protein L26 580240  
102 3J6Y 28 66 60S ribosomal protein L26 580240  
103 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986  
104 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985  
105 4V7F 27 X 60S ribosomal protein L26 4932  
106 4V7E 53 CY 60S ribosomal protein L24 4565  
107 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932  
108 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932  
109 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190  
110 4V6W 57 CY 60S ribosomal protein L26 7227  
111 4V6X 57 CY 60S ribosomal protein L26 9606  
112 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431  
113 4V6U 37 BU 50S ribosomal protein L24P 186497  
114 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 559292  
115 4ADX 30 T RPL24 187420  
116 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932  
117 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932  
118 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932  
119 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565  
120 4V7H 45 BU 60S ribosomal protein L26(A) 5541  
121 4V5Z 73 Bt 60S Ribosomal protein L26 9615  
122 4V4B 40 BU 60S ribosomal protein L26-A 4932  
123 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562  
124 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 623
95% 36 68 459
90% 36 68 483
70% 36 68 518
50% 36 117 235
40% 36 117 265
30% 38 317 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47847
95% 1 1 33588
90% 1 1 32114
70% 36 68 511
50% 36 115 239
40% 36 115 274
30% 36 115 295
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 430
70% 36 74 458
50% 36 74 502
40% 36 74 538
30% 37 309 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 404
90% 36 74 428
70% 36 74 456
50% 36 76 483
40% 36 76 517
30% 36 78 509
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 461
90% 36 68 486
70% 36 68 521
50% 36 70 545
40% 36 70 578
30% 36 70 579
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1650
95% 36 68 457
90% 36 68 481
70% 36 68 516
50% 36 68 574
40% 36 70 577
30% 36 71 560
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 523
50% 36 70 548
40% 36 70 582
30% 36 71 563
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 455
90% 36 68 479
70% 36 68 514
50% 36 68 571
40% 36 68 609
30% 36 118 281
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 409
90% 36 74 433
70% 36 74 462
50% 36 76 485
40% 36 78 500
30% 37 272 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 408
90% 36 74 432
70% 36 74 461
50% 36 124 220
40% 36 124 247
30% 36 124 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 308
95% 34 70 441
90% 34 70 462
70% 34 70 496
50% 34 70 549
40% 34 70 583
30% 34 70 581
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 410
90% 36 74 434
70% 36 74 463
50% 36 74 506
40% 36 74 541
30% 36 74 540
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 480
70% 36 68 515
50% 36 68 572
40% 36 70 576
30% 36 71 559
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 525
50% 36 68 579
40% 36 68 616
30% 36 68 609
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50791
95% 3 5 11231
90% 3 5 11051
70% 3 5 10446
50% 3 5 9396
40% 3 5 8566
30% 3 5 7518
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56374
95% 1 1 39340
90% 1 1 37623
70% 3 21 2237
50% 7 30 1518
40% 7 73 413
30% 26 96 336
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 467
90% 36 68 492
70% 36 68 527
50% 36 69 562
40% 36 69 601
30% 36 69 598
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57644
95% 36 68 468
90% 36 68 493
70% 36 68 528
50% 36 117 237
40% 36 117 267
30% 36 117 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 464
90% 36 68 489
70% 36 68 524
50% 36 68 578
40% 36 68 615
30% 36 116 291
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 478
70% 36 68 513
50% 36 68 569
40% 36 116 269
30% 38 312 53
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1633
95% 35 67 471
90% 35 67 496
70% 35 67 534
50% 35 114 243
40% 35 116 268
30% 35 116 290
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42171
95% 36 74 398
90% 36 74 423
70% 36 74 452
50% 36 74 496
40% 36 121 252
30% 36 121 269
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7702
95% 36 74 402
90% 36 74 426
70% 36 74 455
50% 36 74 499
40% 36 76 516
30% 36 77 515
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 405
90% 36 74 429
70% 36 74 457
50% 36 74 500
40% 36 121 253
30% 36 121 271
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1660
95% 3 21 2182
90% 36 68 485
70% 36 68 520
50% 51 95 300
40% 58 105 287
30% 58 107 304
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49816
95% 1 1 34691
90% 1 7 7982
70% 3 27 1652
50% 36 74 501
40% 36 78 497
30% 36 78 511
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 407
90% 36 74 431
70% 36 74 459
50% 36 74 503
40% 37 77 508
30% 37 78 512
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.