Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 763
95 % 36 68 547
90 % 36 68 577
70 % 36 68 627
50 % 36 146 223
40 % 36 146 249
30 % 44 450 34
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56081
95 % 1 1 39110
90 % 1 1 37261
70 % 36 68 620
50 % 36 142 231
40 % 36 142 260
30 % 36 142 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 322
95 % 36 74 477
90 % 36 74 507
70 % 36 74 551
50 % 36 74 638
40 % 36 74 684
30 % 43 439 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 505
70 % 36 74 548
50 % 36 76 619
40 % 36 76 659
30 % 36 78 648
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 549
90 % 36 68 579
70 % 36 68 630
50 % 36 70 691
40 % 36 70 737
30 % 36 70 740
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2010
95 % 36 68 546
90 % 36 68 575
70 % 36 68 626
50 % 36 68 715
40 % 36 70 734
30 % 36 71 723
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 551
90 % 36 68 581
70 % 36 68 633
50 % 36 70 692
40 % 36 70 738
30 % 36 71 726
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 380
95 % 36 68 544
90 % 36 68 573
70 % 36 68 624
50 % 36 68 713
40 % 36 68 751
30 % 36 145 262
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 328
95 % 36 74 482
90 % 36 74 513
70 % 36 74 558
50 % 36 76 622
40 % 36 78 637
30 % 43 376 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 511
70 % 36 74 556
50 % 36 150 218
40 % 36 150 240
30 % 36 150 252
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 349
95 % 34 70 521
90 % 34 70 549
70 % 34 70 601
50 % 34 70 693
40 % 34 70 739
30 % 34 70 741
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 329
95 % 36 74 483
90 % 36 74 514
70 % 36 74 559
50 % 36 74 643
40 % 36 74 689
30 % 36 74 692
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 545
90 % 36 68 574
70 % 36 68 625
50 % 36 68 714
40 % 36 70 732
30 % 36 71 722
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 553
90 % 36 68 583
70 % 36 68 635
50 % 36 68 719
40 % 36 68 755
30 % 36 68 759
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59312
95 % 3 5 13235
90 % 3 5 12995
70 % 3 5 12228
50 % 3 5 10936
40 % 3 5 9948
30 % 3 5 8649
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65429
95 % 1 1 45371
90 % 1 1 43207
70 % 3 21 2661
50 % 7 30 1792
40 % 7 99 369
30 % 26 122 316
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 372
95 % 36 68 554
90 % 36 68 584
70 % 36 68 636
50 % 36 69 703
40 % 36 69 746
30 % 36 69 752
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66792
95 % 36 68 556
90 % 36 68 586
70 % 36 68 637
50 % 36 143 226
40 % 36 143 254
30 % 36 143 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 552
90 % 36 68 582
70 % 36 68 634
50 % 36 68 718
40 % 36 68 754
30 % 36 140 274
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 543
90 % 36 68 572
70 % 36 68 623
50 % 36 68 712
40 % 36 145 251
30 % 44 445 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1987
95 % 36 68 541
90 % 36 68 569
70 % 36 68 619
50 % 36 141 230
40 % 36 143 253
30 % 36 143 263
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49593
95 % 36 74 468
90 % 36 74 498
70 % 36 74 544
50 % 36 74 632
40 % 36 150 238
30 % 36 150 251
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9274
95 % 36 74 471
90 % 36 74 501
70 % 36 74 547
50 % 36 74 634
40 % 36 76 658
30 % 36 77 658
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 549
50 % 36 74 636
40 % 37 151 237
30 % 37 151 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2019
95 % 3 21 2614
90 % 36 68 578
70 % 36 68 628
50 % 51 103 297
40 % 58 117 270
30 % 58 119 282
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58257
95 % 1 1 40327
90 % 1 7 9427
70 % 3 27 1962
50 % 36 74 637
40 % 36 79 629
30 % 36 79 641
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 323
95 % 36 74 478
90 % 36 74 509
70 % 36 74 554
50 % 36 74 641
40 % 37 77 649
30 % 37 78 651

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CCJ 20 T 50S ribosomal protein L24P 2238
20 3CC7 20 T 50S ribosomal protein L24P 2238
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
22 3CCE 20 T 50S ribosomal protein L24P 2238
23 3G6E 21 T 50S ribosomal protein L24P 2238
24 3CPW 21 S 50S ribosomal protein L24P 2238
25 3CCU 20 T 50S ribosomal protein L24P 2238
26 1VQ6 23 T 50S ribosomal protein L24P 2238
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238
28 3CCL 20 T 50S ribosomal protein L24P 2238
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
30 1YJ9 22 T 50S ribosomal protein L24P 2238
31 3CD6 20 T 50S ribosomal protein L24P 2238
32 3CCV 20 T 50S ribosomal protein L24P 2238
33 3CC4 20 T 50S ribosomal protein L24P 2238
34 2OTL 21 T 50S ribosomal protein L24P 2238
35 3G71 21 T 50S ribosomal protein L24P 2238
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
37 1VQ4 22 T 50S ribosomal protein L24P 2238
38 1YJN 22 T 50S ribosomal protein L24P 2238
39 3CMA 20 T 50S ribosomal protein L24P 2238
40 3CCS 20 T 50S ribosomal protein L24P 2238
41 3CCQ 20 T 50S ribosomal protein L24P 2238
42 3I56 20 T 50S ribosomal protein L24P 2238
43 3CCR 20 T 50S ribosomal protein L24P 2238
44 2OTJ 21 T 50S ribosomal protein L24P 2238
45 4V88 62 BY, DY 60S ribosomal protein L26-A 4932
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
47 3OW2 21 S 50S ribosomal protein L24P 2238
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 4932
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
50 1QVG 22 S 50S ribosomal protein L24P 2238
51 3CME 20 T 50S ribosomal protein L24P 2238
52 2QEX 21 T 50S ribosomal protein L24P 2238
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 4932
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 4932
56 1N8R 21 U 50S ribosomal protein L24P 2238
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 4932
58 1Q81 22 U 50S ribosomal protein L24P 2238
59 1Q82 22 U 50S ribosomal protein L24P 2238
60 1QVF 22 S 50S ribosomal protein L24P 2238
61 4U52 62 N6, n6 60S ribosomal protein L26-A 4932
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 4932
63 1NJI 21 U 50S ribosomal protein L24P 2238
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 4932
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 4932
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 4932
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 4932
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 4932
70 4U55 62 N6, n6 60S ribosomal protein L26-A 4932
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
73 5DAT 62 N6, n6 60S ribosomal protein L26-A 4932
74 3I55 21 T 50S ribosomal protein L24P 2238
75 5I4L 62 N6, n6 60S ribosomal protein L26-A 4932
76 4U51 62 N6, n6 60S ribosomal protein L26-A 4932
77 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
78 4U53 62 N6, n6 60S ribosomal protein L26-A 4932
79 1Q86 22 U 50S ribosomal protein L24P 2238
80 4U50 62 N6, n6 60S ribosomal protein L26-A 4932
81 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
82 3G4S 21 T 50S ribosomal protein L24P 2238
83 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
84 4U56 62 N6, n6 60S ribosomal protein L26-A 4932
85 2QA4 22 T 50S ribosomal protein L24P 2238
86 1Q7Y 22 U 50S ribosomal protein L24P 2238
87 5FCJ 62 N6, n6 60S ribosomal protein L26-A 4932
88 4U4O 62 N6, n6 60S ribosomal protein L26-A 4932
89 4V8P 40 BS, CS, ES, GS RPL26 5911
90 5FCI 62 N6, n6 60S ribosomal protein L26-A 4932
91 5DC3 62 N6, n6 60S ribosomal protein L26-A 4932
92 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932
93 4V4P 20 AU 50S ribosomal protein L24 274
94 4V4R 42 BY 50S ribosomal protein 24 274
95 4V4S 42 BY 50S ribosomal protein 24 274
96 4V4T 41 BY 50S ribosomal protein 24 274
97 5IT7 27 YY KLLA0B05742p 28985
98 3JCT 25 Y 60S ribosomal protein L26-A 4932
99 3JCS 31 W ribosomal protein L24 5661
100 5GAK 8 a 60S ribosomal protein L26-A 4932
101 5FL8 24 Y 60S ribosomal protein L26-A 4932
102 5APN 27 Y 60S ribosomal protein L26-A 4932
103 5APO 27 Y 60S ribosomal protein L26-A 4932
104 3JBN 66 AZ 60S ribosomal protein uL24 5833
105 3JBO 66 AZ 60S ribosomal protein uL24 5833
106 3JBP 66 AZ 60S ribosomal protein uL24 5833
107 3JAN 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
108 3JAJ 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
109 3JAG 24 Y uL24 9986
110 3JAH 24 Y uL24 9986
111 3JAI 24 Y uL24 9986
112 4UG0 27 LY 60S RIBOSOMAL PROTEIN L26 9606
113 5AJ0 27 AY 60S ribosomal protein L26 9606
114 3J92 24 Y uL24 9986
115 4D67 24 Y 60S RIBOSOMAL PROTEIN L26 9986
116 4D5Y 24 Y 60S RIBOSOMAL PROTEIN UL24 9986
117 4V3P 51 LY 60S ribosomal protein L26 4565
118 3J7O 27 Y Ribosomal protein uL24 9823
119 3J7P 28 Y Ribosomal protein uL24 9823
120 3J7Q 27 Y Ribosomal protein uL24 9823
121 3J7R 27 Y Ribosomal protein uL24 9823
122 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986
123 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986
124 3J79 26 Z 60S ribosomal protein uL24 5833
125 3J77 26 76 60S ribosomal protein L26 4932
126 3J78 26 76 60S ribosomal protein L26 4932
127 3J6X 28 66 60S ribosomal protein L26 4932
128 3J6Y 28 66 60S ribosomal protein L26 4932
129 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986
130 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985
131 4V7F 27 X 60S ribosomal protein L26 4932
132 4V7E 53 CY 60S ribosomal protein L24 4565
133 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
134 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
135 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190
136 4V6W 57 CY 60S ribosomal protein L26 7227
137 4V6X 57 CY 60S ribosomal protein L26 9606
138 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431
139 4V6U 37 BU 50S ribosomal protein L24P 2261
140 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 4932
141 4ADX 30 T RPL24 145262
142 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932
143 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
144 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
145 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565
146 4V7H 45 BU 60S ribosomal protein L26(A) 5541
147 4V5Z 73 Bt 60S Ribosomal protein L26 9612
148 4V4B 40 BU 60S ribosomal protein L26-A 4932
149 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
150 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274