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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 248 Members. Sequence cutoff: 40% Cluster size: 125 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 22 T 50S ribosomal protein L24P 272569  
2 1VQO 22 T 50S ribosomal protein L24P 2238  
3 1VQ8 22 T 50S ribosomal protein L24P 2238  
4 1S72 22 T 50S ribosomal protein L24P 2238  
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238  
6 1YHQ 22 T 50S ribosomal protein L24P 2238  
7 1VQP 22 T 50S ribosomal protein L24P 2238  
8 1VQM 22 T 50S ribosomal protein L24P 2238  
9 3CC2 20 T 50S ribosomal protein L24P 2238  
10 1VQL 22 T 50S ribosomal protein L24P 2238  
11 1VQK 22 T 50S ribosomal protein L24P 2238  
12 1VQN 23 T 50S ribosomal protein L24P 2238  
13 1YIJ 22 T 50S ribosomal protein L24P 2238  
14 1YI2 22 T 50S ribosomal protein L24P 2238  
15 1VQ9 22 T 50S ribosomal protein L24P 2238  
16 1VQ7 22 T 50S ribosomal protein L24P 2238  
17 3CCM 20 T 50S ribosomal protein L24P 272569  
18 1VQ5 22 T 50S ribosomal protein L24P 2238  
19 3CCJ 20 T 50S ribosomal protein L24P 272569  
20 3CC7 20 T 50S ribosomal protein L24P 2238  
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238  
22 3CCE 20 T 50S ribosomal protein L24P 272569  
23 3G6E 21 T 50S ribosomal protein L24P 2238  
24 3CPW 21 S 50S ribosomal protein L24P 272569  
25 3CCU 20 T 50S ribosomal protein L24P 272569  
26 1VQ6 23 T 50S ribosomal protein L24P 2238  
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238  
28 3CCL 20 T 50S ribosomal protein L24P 272569  
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238  
30 1YJ9 22 T 50S ribosomal protein L24P 2238  
31 3CD6 20 T 50S ribosomal protein L24P 272569  
32 3CCV 20 T 50S ribosomal protein L24P 272569  
33 3CC4 20 T 50S ribosomal protein L24P 272569  
34 2OTL 21 T 50S ribosomal protein L24P 2238  
35 3G71 21 T 50S ribosomal protein L24P 2238  
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238  
37 1VQ4 22 T 50S ribosomal protein L24P 2238  
38 1YJN 22 T 50S ribosomal protein L24P 2238  
39 3CMA 20 T 50S ribosomal protein L24P 2238  
40 3CCS 20 T 50S ribosomal protein L24P 272569  
41 3CCQ 20 T 50S ribosomal protein L24P 272569  
42 3I56 20 T 50S ribosomal protein L24P 2238  
43 3CCR 20 T 50S ribosomal protein L24P 272569  
44 2OTJ 21 T 50S ribosomal protein L24P 2238  
45 4V88 62 BY, DY 60S ribosomal protein L26-A 559292  
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238  
47 3OW2 21 S 50S ribosomal protein L24P 2238  
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 559292  
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238  
50 1QVG 22 S 50S ribosomal protein L24P 2238  
51 3CME 20 T 50S ribosomal protein L24P 2238  
52 2QEX 21 T 50S ribosomal protein L24P 2238  
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 559292  
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238  
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 559292  
56 1N8R 21 U 50S ribosomal protein L24P 2238  
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 559292  
58 1Q81 22 U 50S ribosomal protein L24P 2238  
59 1Q82 22 U 50S ribosomal protein L24P 2238  
60 1QVF 22 S 50S ribosomal protein L24P 2238  
61 4U52 62 N6, n6 60S ribosomal protein L26-A 559292  
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 559292  
63 1NJI 21 U 50S ribosomal protein L24P 2238  
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 559292  
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 559292  
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238  
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 559292  
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 559292  
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 559292  
70 4U55 62 N6, n6 60S ribosomal protein L26-A 559292  
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238  
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238  
73 3I55 21 T 50S ribosomal protein L24P 2238  
74 4U51 62 N6, n6 60S ribosomal protein L26-A 559292  
75 1K8A 21 U RIBOSOMAL PROTEIN L24 2238  
76 4U53 62 N6, n6 60S ribosomal protein L26-A 559292  
77 1Q86 22 U 50S ribosomal protein L24P 2238  
78 4U50 62 N6, n6 60S ribosomal protein L26-A 559292  
79 1M1K 21 U RIBOSOMAL PROTEIN L24 2238  
80 3G4S 21 T 50S ribosomal protein L24P 2238  
81 1W2B 24 S RIBOSOMAL PROTEIN L24 2238  
82 4U56 62 N6, n6 60S ribosomal protein L26-A 559292  
83 2QA4 22 T 50S ribosomal protein L24P 2238  
84 1Q7Y 22 U 50S ribosomal protein L24P 2238  
85 4U4O 62 N6, n6 60S ribosomal protein L26-A 559292  
86 4V8P 40 BS, CS, ES, GS RPL26 5911  
87 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932  
88 4V4P 20 AU 50S ribosomal protein L24 300852  
89 4V4R 42 BY 50S ribosomal protein 24 274  
90 4V4S 42 BY 50S ribosomal protein 24 274  
91 4V4T 41 BY 50S ribosomal protein 24 274  
92 3J92 24 Y uL24 9986  
93 3J7O 27 Y Ribosomal protein uL24 9823  
94 3J7P 28 Y Ribosomal protein uL24 9823  
95 3J7Q 27 Y Ribosomal protein uL24 9823  
96 3J7R 27 Y Ribosomal protein uL24 9823  
97 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986  
98 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986  
99 3J79 26 Z 60S ribosomal protein uL24 36329  
100 3J77 26 76 60S ribosomal protein L26 4932  
101 3J78 26 76 60S ribosomal protein L26 4932  
102 3J6X 28 66 60S ribosomal protein L26 580240  
103 3J6Y 28 66 60S ribosomal protein L26 580240  
104 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986  
105 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985  
106 4V7F 27 X 60S ribosomal protein L26 4932  
107 4V7E 53 CY 60S ribosomal protein L24 4565  
108 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932  
109 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932  
110 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190  
111 4V6W 57 CY 60S ribosomal protein L26 7227  
112 4V6X 57 CY 60S ribosomal protein L26 9606  
113 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431  
114 4V6U 37 BU 50S ribosomal protein L24P 186497  
115 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 559292  
116 4ADX 30 T RPL24 187420  
117 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932  
118 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932  
119 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932  
120 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565  
121 4V7H 45 BU 60S ribosomal protein L26(A) 5541  
122 4V5Z 73 Bt 60S Ribosomal protein L26 9615  
123 4V4B 40 BU 60S ribosomal protein L26-A 4932  
124 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562  
125 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 631
95% 36 68 463
90% 36 68 486
70% 36 68 522
50% 36 118 234
40% 36 118 263
30% 38 320 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48113
95% 1 1 33762
90% 1 1 32280
70% 36 68 515
50% 36 116 240
40% 36 116 271
30% 36 116 293
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 408
90% 36 74 432
70% 36 74 461
50% 36 74 507
40% 36 74 544
30% 37 312 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 406
90% 36 74 430
70% 36 74 459
50% 36 76 486
40% 36 76 520
30% 36 78 512
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 465
90% 36 68 489
70% 36 68 525
50% 36 70 549
40% 36 70 583
30% 36 70 583
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1663
95% 36 68 461
90% 36 68 484
70% 36 68 520
50% 36 68 583
40% 36 70 582
30% 36 71 564
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 467
90% 36 68 491
70% 36 68 527
50% 36 70 552
40% 36 70 587
30% 36 71 566
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 459
90% 36 68 482
70% 36 68 518
50% 36 68 580
40% 36 68 614
30% 36 119 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 411
90% 36 74 435
70% 36 74 465
50% 36 76 488
40% 36 78 503
30% 37 274 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 410
90% 36 74 434
70% 36 74 464
50% 36 125 220
40% 36 125 248
30% 36 125 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 308
95% 34 70 445
90% 34 70 465
70% 34 70 500
50% 34 70 553
40% 34 70 588
30% 34 70 585
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 412
90% 36 74 436
70% 36 74 466
50% 36 74 510
40% 36 74 546
30% 36 74 543
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 460
90% 36 68 483
70% 36 68 519
50% 36 68 581
40% 36 70 581
30% 36 71 563
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 469
90% 36 68 493
70% 36 68 529
50% 36 68 588
40% 36 68 621
30% 36 68 614
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51060
95% 3 5 11294
90% 3 5 11114
70% 3 5 10501
50% 3 5 9441
40% 3 5 8612
30% 3 5 7552
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56660
95% 1 1 39523
90% 1 1 37797
70% 3 21 2250
50% 7 30 1530
40% 7 74 412
30% 26 97 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 471
90% 36 68 495
70% 36 68 531
50% 36 69 567
40% 36 69 606
30% 36 69 601
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57931
95% 36 68 472
90% 36 68 496
70% 36 68 532
50% 36 118 235
40% 36 118 264
30% 36 118 285
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 468
90% 36 68 492
70% 36 68 528
50% 36 68 587
40% 36 68 620
30% 36 117 289
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 458
90% 36 68 481
70% 36 68 517
50% 36 68 578
40% 36 117 268
30% 38 315 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1646
95% 35 67 475
90% 35 67 499
70% 35 67 537
50% 35 115 243
40% 35 117 266
30% 35 117 286
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42415
95% 36 74 400
90% 36 74 424
70% 36 74 454
50% 36 74 501
40% 36 122 253
30% 36 122 271
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7746
95% 36 74 404
90% 36 74 428
70% 36 74 458
50% 36 74 504
40% 36 76 519
30% 36 77 517
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 407
90% 36 74 431
70% 36 74 460
50% 36 74 505
40% 36 122 256
30% 36 122 273
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1674
95% 3 21 2196
90% 36 68 488
70% 36 68 524
50% 51 95 298
40% 58 105 287
30% 58 107 306
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50083
95% 1 1 34865
90% 1 7 8025
70% 3 27 1659
50% 36 74 506
40% 36 78 500
30% 36 78 513
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 409
90% 36 74 433
70% 36 74 462
50% 36 74 508
40% 37 77 511
30% 37 78 514
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.