Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 804
95 % 36 68 636
90 % 36 68 663
70 % 36 68 705
50 % 36 174 198
40 % 36 174 217
30 % 44 506 29
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58062
95 % 1 1 40478
90 % 1 1 38552
70 % 36 68 697
50 % 36 170 205
40 % 36 170 227
30 % 36 170 233
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 405
95 % 36 74 566
90 % 36 74 594
70 % 36 74 625
50 % 36 74 673
40 % 36 74 712
30 % 43 488 35
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 403
95 % 36 74 564
90 % 36 74 592
70 % 36 74 622
50 % 36 76 651
40 % 36 76 693
30 % 36 79 665
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 452
95 % 36 68 637
90 % 36 68 665
70 % 36 68 707
50 % 36 70 729
40 % 36 70 766
30 % 36 70 766
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2129
95 % 36 68 635
90 % 36 68 661
70 % 36 68 703
50 % 36 68 755
40 % 36 72 738
30 % 36 72 737
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 454
95 % 36 68 640
90 % 36 68 667
70 % 36 68 711
50 % 36 70 730
40 % 36 70 767
30 % 36 71 750
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 463
95 % 36 68 633
90 % 36 68 659
70 % 36 68 700
50 % 36 68 752
40 % 36 68 787
30 % 36 173 226
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 571
90 % 36 74 598
70 % 36 74 631
50 % 36 76 654
40 % 36 78 670
30 % 43 397 57
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 409
95 % 36 74 569
90 % 36 74 597
70 % 36 74 630
50 % 36 178 192
40 % 36 178 208
30 % 36 178 221
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 434
95 % 34 70 615
90 % 34 70 641
70 % 34 70 681
50 % 34 70 731
40 % 34 70 769
30 % 34 70 768
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 572
90 % 36 74 599
70 % 36 74 632
50 % 36 74 678
40 % 36 74 715
30 % 36 74 716
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 450
95 % 36 68 634
90 % 36 68 660
70 % 36 68 701
50 % 36 68 753
40 % 36 70 763
30 % 36 71 747
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 456
95 % 36 68 642
90 % 36 68 669
70 % 36 68 713
50 % 36 68 760
40 % 36 68 792
30 % 36 68 789
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61371
95 % 3 5 13716
90 % 3 5 13469
70 % 3 5 12638
50 % 3 5 11301
40 % 3 5 10255
30 % 3 5 8904
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67630
95 % 1 1 46877
90 % 1 1 44596
70 % 3 21 2800
50 % 7 30 1872
40 % 7 127 292
30 % 26 150 263
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 457
95 % 36 68 643
90 % 36 68 670
70 % 36 68 716
50 % 36 69 739
40 % 36 69 780
30 % 36 69 779
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69026
95 % 36 68 644
90 % 36 68 671
70 % 36 68 717
50 % 36 171 201
40 % 36 171 224
30 % 36 171 231
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 455
95 % 36 68 641
90 % 36 68 668
70 % 36 68 712
50 % 36 68 759
40 % 36 68 791
30 % 36 167 238
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 449
95 % 36 68 632
90 % 36 68 658
70 % 36 68 699
50 % 36 68 751
40 % 36 172 221
30 % 44 497 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2113
95 % 36 68 630
90 % 36 68 656
70 % 36 68 696
50 % 36 169 204
40 % 36 171 223
30 % 36 171 230
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51400
95 % 36 74 555
90 % 36 74 585
70 % 36 74 617
50 % 36 74 667
40 % 36 178 205
30 % 36 178 218
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9669
95 % 36 74 559
90 % 36 74 589
70 % 36 74 621
50 % 36 74 669
40 % 36 76 691
30 % 37 78 674
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 404
95 % 36 74 565
90 % 36 74 593
70 % 36 74 623
50 % 36 74 671
40 % 37 178 207
30 % 37 178 220
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2140
95 % 3 21 2771
90 % 36 68 664
70 % 36 68 706
50 % 51 105 311
40 % 58 120 281
30 % 58 122 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60293
95 % 1 1 41719
90 % 1 7 9766
70 % 3 27 2080
50 % 36 74 672
40 % 36 79 658
30 % 36 79 668
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 406
95 % 36 74 567
90 % 36 74 595
70 % 36 74 628
50 % 36 74 677
40 % 37 77 683
30 % 37 78 677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 22 T 50S ribosomal protein L24P 2238
2 1VQO 22 T 50S ribosomal protein L24P 2238
3 1VQ8 22 T 50S ribosomal protein L24P 2238
4 1S72 22 T 50S ribosomal protein L24P 2238
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238
6 1YHQ 22 T 50S ribosomal protein L24P 2238
7 1VQP 22 T 50S ribosomal protein L24P 2238
8 1VQM 22 T 50S ribosomal protein L24P 2238
9 3CC2 20 T 50S ribosomal protein L24P 2238
10 1VQL 22 T 50S ribosomal protein L24P 2238
11 1VQK 22 T 50S ribosomal protein L24P 2238
12 1VQN 23 T 50S ribosomal protein L24P 2238
13 1YIJ 22 T 50S ribosomal protein L24P 2238
14 1YI2 22 T 50S ribosomal protein L24P 2238
15 1VQ9 22 T 50S ribosomal protein L24P 2238
16 1VQ7 22 T 50S ribosomal protein L24P 2238
17 3CCM 20 T 50S ribosomal protein L24P 2238
18 1VQ5 22 T 50S ribosomal protein L24P 2238
19 3CCJ 20 T 50S ribosomal protein L24P 2238
20 3CC7 20 T 50S ribosomal protein L24P 2238
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238
22 3CCE 20 T 50S ribosomal protein L24P 2238
23 3G6E 21 T 50S ribosomal protein L24P 2238
24 3CPW 21 S 50S ribosomal protein L24P 2238
25 3CCU 20 T 50S ribosomal protein L24P 2238
26 1VQ6 23 T 50S ribosomal protein L24P 2238
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238
28 3CCL 20 T 50S ribosomal protein L24P 2238
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238
30 1YJ9 22 T 50S ribosomal protein L24P 2238
31 3CD6 20 T 50S ribosomal protein L24P 2238
32 3CCV 20 T 50S ribosomal protein L24P 2238
33 3CC4 20 T 50S ribosomal protein L24P 2238
34 2OTL 21 T 50S ribosomal protein L24P 2238
35 3G71 21 T 50S ribosomal protein L24P 2238
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238
37 1VQ4 22 T 50S ribosomal protein L24P 2238
38 1YJN 22 T 50S ribosomal protein L24P 2238
39 3CMA 20 T 50S ribosomal protein L24P 2238
40 3CCS 20 T 50S ribosomal protein L24P 2238
41 3CCQ 20 T 50S ribosomal protein L24P 2238
42 3I56 20 T 50S ribosomal protein L24P 2238
43 3CCR 20 T 50S ribosomal protein L24P 2238
44 2OTJ 21 T 50S ribosomal protein L24P 2238
45 4V88 62 BY, DY 60S ribosomal protein L26-A 4932
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238
47 3OW2 21 S 50S ribosomal protein L24P 2238
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 4932
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238
50 1QVG 22 S 50S ribosomal protein L24P 2238
51 3CME 20 T 50S ribosomal protein L24P 2238
52 2QEX 21 T 50S ribosomal protein L24P 2238
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 4932
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 4932
56 1N8R 21 U 50S ribosomal protein L24P 2238
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 4932
58 1Q81 22 U 50S ribosomal protein L24P 2238
59 1Q82 22 U 50S ribosomal protein L24P 2238
60 1QVF 22 S 50S ribosomal protein L24P 2238
61 4U52 62 N6, n6 60S ribosomal protein L26-A 4932
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 4932
63 1NJI 21 U 50S ribosomal protein L24P 2238
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 4932
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 4932
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 4932
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 4932
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 4932
70 4U55 62 N6, n6 60S ribosomal protein L26-A 4932
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238
73 5DAT 62 N6, n6 60S ribosomal protein L26-A 4932
74 3I55 21 T 50S ribosomal protein L24P 2238
75 5I4L 62 N6, n6 60S ribosomal protein L26-A 4932
76 4U51 62 N6, n6 60S ribosomal protein L26-A 4932
77 1K8A 21 U RIBOSOMAL PROTEIN L24 2238
78 4U53 62 N6, n6 60S ribosomal protein L26-A 4932
79 1Q86 22 U 50S ribosomal protein L24P 2238
80 4U50 62 N6, n6 60S ribosomal protein L26-A 4932
81 5LYB 62 N6, n6 60S ribosomal protein L26-A 4932
82 1M1K 21 U RIBOSOMAL PROTEIN L24 2238
83 3G4S 21 T 50S ribosomal protein L24P 2238
84 1W2B 24 S RIBOSOMAL PROTEIN L24 2238
85 4U56 62 N6, n6 60S ribosomal protein L26-A 4932
86 2QA4 22 T 50S ribosomal protein L24P 2238
87 5TGA 62 N6, n6 60S ribosomal protein L26-A 4932
88 1Q7Y 22 U 50S ribosomal protein L24P 2238
89 5FCJ 62 N6, n6 60S ribosomal protein L26-A 4932
90 4U4O 62 N6, n6 60S ribosomal protein L26-A 4932
91 5DGV 62 N6, n6 60S ribosomal protein L26-A 4932
92 5DGE 62 N6, n6 60S ribosomal protein L26-A 4932
93 4V8P 40 BS, CS, ES, GS RPL26 5911
94 5FCI 62 N6, n6 60S ribosomal protein L26-A 4932
95 5DC3 62 N6, n6 60S ribosomal protein L26-A 4932
96 5DGF 62 N6, n6 60S ribosomal protein L26-A 4932
97 5TGM 62 N6, n6 60S ribosomal protein L26-A 4932
98 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932
99 4V4P 20 AU 50S ribosomal protein L24 274
100 4V4R 42 BY 50S ribosomal protein 24 274
101 4V4S 42 BY 50S ribosomal protein 24 274
102 4V4T 41 BY 50S ribosomal protein 24 274
103 5MC6 51 AK 60S ribosomal protein L26-A 4932
104 5H4P 26 Y 60S ribosomal protein L26-A 4932
105 5M1J 76 Y5 60S ribosomal protein L26-A 4932
106 5LZS 24 Y Uncharacterized protein 9986
107 5LZT 24 Y uL24 9986
108 5LZU 24 Y uL24 9986
109 5LZV 24 Y uL24 9986
110 5LZW 24 Y uL24 9986
111 5LZX 24 Y uL24 9986
112 5LZY 24 Y uL24 9986
113 5LZZ 24 Y uL24 9986
114 5T62 28 l 60S ribosomal protein L26-A 4932
115 5T6R 27 l 60S ribosomal protein L26-A 4932
116 5T5H 23 Z 60S ribosomal protein L26 5693
117 5T2A 24 X uL24 5661
118 5T2C 14 S 60S ribosomal protein L26 9606
119 5JUO 30 DA uL24 (yeast L26) 4932
120 5JUP 30 DA uL24 (yeast L26) 4932
121 5JUS 30 DA uL24 (yeast L26) 4932
122 5JUT 30 DA uL24 (yeast L26) 4932
123 5JUU 30 DA uL24 (yeast L26) 4932
124 5JCS 46 Y 60S ribosomal protein L26-A 4932
125 5IT7 27 YY KLLA0B05742p 28985
126 3JCT 25 Y 60S ribosomal protein L26-A 4932
127 3JCS 31 W ribosomal protein L24 5661
128 5GAK 8 a 60S ribosomal protein L26-A 4932
129 5FL8 24 Y 60S ribosomal protein L26-A 4932
130 5APN 27 Y 60S ribosomal protein L26-A 4932
131 5APO 27 Y 60S ribosomal protein L26-A 4932
132 3JBN 66 AZ 60S ribosomal protein uL24 5833
133 3JBO 66 AZ 60S ribosomal protein uL24 5833
134 3JBP 66 AZ 60S ribosomal protein uL24 5833
135 3JAN 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
136 3JAJ 17 Y Ribosomal protein uL24 SEE REMARK 999 9986
137 3JAG 24 Y uL24 9986
138 3JAH 24 Y uL24 9986
139 3JAI 24 Y uL24 9986
140 4UG0 27 LY 60S RIBOSOMAL PROTEIN L26 9606
141 5AJ0 27 AY 60S ribosomal protein L26 9606
142 3J92 24 Y uL24 9986
143 4D67 24 Y 60S RIBOSOMAL PROTEIN L26 9986
144 4D5Y 24 Y 60S RIBOSOMAL PROTEIN UL24 9986
145 4V3P 51 LY 60S ribosomal protein L26 4565
146 3J7O 27 Y Ribosomal protein uL24 9823
147 3J7P 28 Y Ribosomal protein uL24 9823
148 3J7Q 27 Y Ribosomal protein uL24 9823
149 3J7R 27 Y Ribosomal protein uL24 9823
150 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986
151 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986
152 3J79 26 Z 60S ribosomal protein uL24 5833
153 3J77 26 76 60S ribosomal protein L26 4932
154 3J78 26 76 60S ribosomal protein L26 4932
155 3J6X 28 66 60S ribosomal protein L26 4932
156 3J6Y 28 66 60S ribosomal protein L26 4932
157 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986
158 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985
159 4V7F 27 X 60S ribosomal protein L26 4932
160 4V7E 53 CY 60S ribosomal protein L24 4565
161 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
162 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932
163 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190
164 4V6W 57 CY 60S ribosomal protein L26 7227
165 4V6X 57 CY 60S ribosomal protein L26 9606
166 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431
167 4V6U 37 BU 50S ribosomal protein L24P 2261
168 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 4932
169 4ADX 30 T RPL24 145262
170 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932
171 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
172 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932
173 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565
174 4V7H 45 BU 60S ribosomal protein L26(A) 5541
175 4V5Z 73 Bt 60S Ribosomal protein L26 9612
176 4V4B 40 BU 60S ribosomal protein L26-A 4932
177 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562
178 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274