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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 263 Members. Sequence cutoff: 30% Cluster size: 129 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 22 T 50S ribosomal protein L24P 272569  
2 1VQO 22 T 50S ribosomal protein L24P 2238  
3 1VQ8 22 T 50S ribosomal protein L24P 2238  
4 1S72 22 T 50S ribosomal protein L24P 2238  
5 1JJ2 21 S RIBOSOMAL PROTEIN L24 2238  
6 1YHQ 22 T 50S ribosomal protein L24P 2238  
7 1VQP 22 T 50S ribosomal protein L24P 2238  
8 1VQM 22 T 50S ribosomal protein L24P 2238  
9 3CC2 20 T 50S ribosomal protein L24P 2238  
10 1VQL 22 T 50S ribosomal protein L24P 2238  
11 1VQK 22 T 50S ribosomal protein L24P 2238  
12 1VQN 23 T 50S ribosomal protein L24P 2238  
13 1YIJ 22 T 50S ribosomal protein L24P 2238  
14 1YI2 22 T 50S ribosomal protein L24P 2238  
15 1VQ9 22 T 50S ribosomal protein L24P 2238  
16 1VQ7 22 T 50S ribosomal protein L24P 2238  
17 3CCM 20 T 50S ribosomal protein L24P 272569  
18 1VQ5 22 T 50S ribosomal protein L24P 2238  
19 3CCJ 20 T 50S ribosomal protein L24P 272569  
20 3CC7 20 T 50S ribosomal protein L24P 2238  
21 1YIT 26 T 50S RIBOSOMAL PROTEIN L24P 2238  
22 3CCE 20 T 50S ribosomal protein L24P 272569  
23 3G6E 21 T 50S ribosomal protein L24P 2238  
24 3CPW 21 S 50S ribosomal protein L24P 2238  
25 3CCU 20 T 50S ribosomal protein L24P 272569  
26 1VQ6 23 T 50S ribosomal protein L24P 2238  
27 1M90 22 U RIBOSOMAL PROTEIN L24 2238  
28 3CCL 20 T 50S ribosomal protein L24P 272569  
29 1YJW 26 T 50S RIBOSOMAL PROTEIN L24P 2238  
30 1YJ9 22 T 50S ribosomal protein L24P 2238  
31 3CD6 20 T 50S ribosomal protein L24P 272569  
32 3CCV 20 T 50S ribosomal protein L24P 272569  
33 3CC4 20 T 50S ribosomal protein L24P 272569  
34 2OTL 21 T 50S ribosomal protein L24P 2238  
35 3G71 21 T 50S ribosomal protein L24P 2238  
36 1FFK 19 Q RIBOSOMAL PROTEIN L24 2238  
37 1VQ4 22 T 50S ribosomal protein L24P 2238  
38 1YJN 22 T 50S ribosomal protein L24P 2238  
39 3CMA 20 T 50S ribosomal protein L24P 2238  
40 3CCS 20 T 50S ribosomal protein L24P 272569  
41 3CCQ 20 T 50S ribosomal protein L24P 272569  
42 3I56 20 T 50S ribosomal protein L24P 2238  
43 3CCR 20 T 50S ribosomal protein L24P 272569  
44 2OTJ 21 T 50S ribosomal protein L24P 2238  
45 4V88 62 BY, DY 60S ribosomal protein L26-A 559292  
46 1KQS 23 S RIBOSOMAL PROTEIN L24 2238  
47 3OW2 21 S 50S ribosomal protein L24P 2238  
48 4U4R 62 N6, n6 60S ribosomal protein L26-A 559292  
49 3CXC 22 S RIBOSOMAL PROTEIN L24 2238  
50 1QVG 22 S 50S ribosomal protein L24P 2238  
51 3CME 20 T 50S ribosomal protein L24P 2238  
52 2QEX 21 T 50S ribosomal protein L24P 2238  
53 4U3U 62 N6, n6 60S ribosomal protein L26-A 559292  
54 1KC8 21 U RIBOSOMAL PROTEIN L24 2238  
55 4U3M 62 N6, n6 60S ribosomal protein L26-A 559292  
56 1N8R 21 U 50S ribosomal protein L24P 2238  
57 4U3N 62 N6, n6 60S ribosomal protein L26-A 559292  
58 1Q81 22 U 50S ribosomal protein L24P 2238  
59 1Q82 22 U 50S ribosomal protein L24P 2238  
60 1QVF 22 S 50S ribosomal protein L24P 2238  
61 4U52 62 N6, n6 60S ribosomal protein L26-A 559292  
62 4U4Q 62 N6, n6 60S ribosomal protein L26-A 559292  
63 1NJI 21 U 50S ribosomal protein L24P 2238  
64 4U6F 62 N6, n6 60S ribosomal protein L26-A 559292  
65 4U4U 62 N6, n6 60S ribosomal protein L26-A 559292  
66 1K73 21 U RIBOSOMAL PROTEIN L24 2238  
67 4U4Z 62 N6, n6 60S ribosomal protein L26-A 559292  
68 4U4Y 62 N6, n6 60S ribosomal protein L26-A 559292  
69 4U4N 62 N6, n6 60S ribosomal protein L26-A 559292  
70 4U55 62 N6, n6 60S ribosomal protein L26-A 559292  
71 1K9M 21 U RIBOSOMAL PROTEIN L24 2238  
72 1KD1 21 U RIBOSOMAL PROTEIN L24 2238  
73 3I55 21 T 50S ribosomal protein L24P 2238  
74 4U51 62 N6, n6 60S ribosomal protein L26-A 559292  
75 1K8A 21 U RIBOSOMAL PROTEIN L24 2238  
76 4U53 62 N6, n6 60S ribosomal protein L26-A 559292  
77 1Q86 22 U 50S ribosomal protein L24P 2238  
78 4U50 62 N6, n6 60S ribosomal protein L26-A 559292  
79 1M1K 21 U RIBOSOMAL PROTEIN L24 2238  
80 3G4S 21 T 50S ribosomal protein L24P 2238  
81 1W2B 24 S RIBOSOMAL PROTEIN L24 2238  
82 4U56 62 N6, n6 60S ribosomal protein L26-A 559292  
83 2QA4 22 T 50S ribosomal protein L24P 2238  
84 1Q7Y 22 U 50S ribosomal protein L24P 2238  
85 4U4O 62 N6, n6 60S ribosomal protein L26-A 559292  
86 4V8P 40 BS, CS, ES, GS RPL26 5911  
87 4V7R 53 BX, DX 60S ribosomal protein L26-A 4932  
88 4V4P 20 AU 50S ribosomal protein L24 300852  
89 4V4R 42 BY 50S ribosomal protein 24 274  
90 4V4S 42 BY 50S ribosomal protein 24 274  
91 4V4T 41 BY 50S ribosomal protein 24 274  
92 3J92 24 Y uL24 9986  
93 4D67 24 Y 60S RIBOSOMAL PROTEIN L26 9986  
94 4D5Y 24 Y 60S RIBOSOMAL PROTEIN UL24 9986  
95 4V3P 51 LY 60S ribosomal protein L26 4565  
96 3J7O 27 Y Ribosomal protein uL24 9823  
97 3J7P 28 Y Ribosomal protein uL24 9823  
98 3J7Q 27 Y Ribosomal protein uL24 9823  
99 3J7R 27 Y Ribosomal protein uL24 9823  
100 4UJC 30 BY 60S RIBOSOMAL PROTEIN L26 9986  
101 4UJD 27 AY 60S RIBOSOMAL PROTEIN L26 9986  
102 3J79 26 Z 60S ribosomal protein uL24 36329  
103 3J77 26 76 60S ribosomal protein L26 4932  
104 3J78 26 76 60S ribosomal protein L26 4932  
105 3J6X 28 66 60S ribosomal protein L26 580240  
106 3J6Y 28 66 60S ribosomal protein L26 580240  
107 4UJE 61 CY 60S RIBOSOMAL PROTEIN L26 9986  
108 4V91 27 Y UL24 RIBOSOMAL PROTEIN UL24 28985  
109 4V7F 27 X 60S ribosomal protein L26 4932  
110 4V7E 53 CY 60S ribosomal protein L24 4565  
111 4V8Y 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932  
112 4V8Z 59 BY 60S RIBOSOMAL PROTEIN L26-A 4932  
113 4V4N 7 AU 50S ribosomal protein L24P SEE REMARK 999 2190  
114 4V6W 57 CY 60S ribosomal protein L26 7227  
115 4V6X 57 CY 60S ribosomal protein L26 9606  
116 4V8M 59 BZ 60S RIBOSOMAL PROTEIN L26, PUTATIVE 185431  
117 4V6U 37 BU 50S ribosomal protein L24P 186497  
118 4V8T 25 Y 60S RIBOSOMAL PROTEIN L26-A 559292  
119 4ADX 30 T RPL24 187420  
120 4V6I 52 BY 60S ribosomal protein rpL26 (L24p) 4932  
121 2WW9 12 L 60S RIBOSOMAL PROTEIN L26-A 4932  
122 2WWA 12 L 60S RIBOSOMAL PROTEIN L26-A 4932  
123 2WWB 12 L 60S RIBOSOMAL PROTEIN L26-A 4565  
124 4V7H 45 BU 60S ribosomal protein L26(A) 5541  
125 4V5Z 73 Bt 60S Ribosomal protein L26 9615  
126 4V4B 40 BU 60S ribosomal protein L26-A 4932  
127 1ML5 42 u 50S RIBOSOMAL PROTEIN L24 562  
128 4V42 44 BU 50S RIBOSOMAL PROTEIN L24 274  
129 5AJ0 27 AY 60S ribosomal protein L26 9606  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 670
95% 36 68 475
90% 36 68 498
70% 36 68 538
50% 36 122 239
40% 36 122 263
30% 41 343 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49544
95% 1 1 34729
90% 1 1 33184
70% 36 68 531
50% 36 120 245
40% 36 120 269
30% 36 120 287
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 417
90% 36 74 442
70% 36 74 473
50% 36 74 523
40% 36 74 564
30% 40 335 51
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 415
90% 36 74 440
70% 36 74 470
50% 36 76 499
40% 36 76 539
30% 36 78 523
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 327
95% 36 68 477
90% 36 68 501
70% 36 68 541
50% 36 70 581
40% 36 70 616
30% 36 70 617
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1716
95% 36 68 473
90% 36 68 496
70% 36 68 536
50% 36 68 616
40% 36 70 615
30% 36 71 594
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 479
90% 36 68 503
70% 36 68 543
50% 36 70 584
40% 36 70 620
30% 36 71 597
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 338
95% 36 68 471
90% 36 68 494
70% 36 68 534
50% 36 68 613
40% 36 68 647
30% 36 123 280
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 420
90% 36 74 445
70% 36 74 477
50% 36 76 500
40% 36 78 520
30% 40 293 68
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 419
90% 36 74 444
70% 36 74 476
50% 36 129 221
40% 36 129 247
30% 36 129 263
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 314
95% 34 70 456
90% 34 70 477
70% 34 70 513
50% 34 70 585
40% 34 70 621
30% 34 70 619
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 294
95% 36 74 421
90% 36 74 446
70% 36 74 478
50% 36 74 526
40% 36 74 566
30% 36 74 560
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 472
90% 36 68 495
70% 36 68 535
50% 36 68 614
40% 36 70 614
30% 36 71 593
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 481
90% 36 68 505
70% 36 68 545
50% 36 68 620
40% 36 68 652
30% 36 68 647
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52539
95% 3 5 11587
90% 3 5 11397
70% 3 5 10780
50% 3 5 9682
40% 3 5 8839
30% 3 5 7731
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58247
95% 1 1 40593
90% 1 1 38787
70% 3 21 2318
50% 7 30 1577
40% 7 78 410
30% 26 101 335
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 483
90% 36 68 507
70% 36 68 547
50% 36 69 603
40% 36 69 639
30% 36 69 634
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59545
95% 36 68 484
90% 36 68 508
70% 36 68 549
50% 36 122 240
40% 36 122 264
30% 36 122 282
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 330
95% 36 68 480
90% 36 68 504
70% 36 68 544
50% 36 68 619
40% 36 68 651
30% 36 121 284
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 470
90% 36 68 493
70% 36 68 533
50% 36 68 611
40% 36 121 267
30% 41 338 50
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1699
95% 36 68 468
90% 36 68 491
70% 36 68 530
50% 36 120 244
40% 36 122 262
30% 36 122 281
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 43724
95% 36 74 409
90% 36 74 434
70% 36 74 466
50% 36 74 516
40% 36 126 254
30% 36 126 270
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8034
95% 36 74 413
90% 36 74 438
70% 36 74 469
50% 36 74 518
40% 36 76 537
30% 36 77 530
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 416
90% 36 74 441
70% 36 74 471
50% 36 74 521
40% 36 127 253
30% 36 127 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1727
95% 3 21 2266
90% 36 68 500
70% 36 68 540
50% 51 95 310
40% 58 105 292
30% 58 107 308
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51553
95% 1 1 35854
90% 1 7 8244
70% 3 27 1705
50% 36 74 522
40% 36 79 507
30% 36 79 515
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 418
90% 36 74 443
70% 36 74 474
50% 36 74 525
40% 37 77 530
30% 37 78 525
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.