Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 641
95 % 35 68 781 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 812
70 % 35 68 862
50 % 35 215 204
40 % 45 647 23
30 % 45 647 40
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50309
95 % 1 1 41664
90 % 1 1 39661
70 % 35 68 863
50 % 35 214 205
40 % 35 214 224
30 % 35 214 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 581
95 % 35 74 717 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 741
70 % 35 74 785
50 % 35 74 838
40 % 35 212 225
30 % 35 212 243
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 572
95 % 35 74 703 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 728
70 % 35 74 774
50 % 35 76 805
40 % 35 76 836
30 % 35 79 805
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 654
95 % 35 68 797 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 829
70 % 35 68 880
50 % 35 70 886
40 % 35 70 915
30 % 35 70 906
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2980
95 % 35 68 802 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 834
70 % 35 68 883
50 % 35 68 931
40 % 35 72 887
30 % 35 72 889
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 642
95 % 35 68 782 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 813
70 % 35 68 864
50 % 35 70 896
40 % 35 70 929
30 % 35 71 901
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 669
95 % 35 68 787 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 819
70 % 35 68 869
50 % 35 68 921
40 % 35 68 949
30 % 35 212 242
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 584
95 % 35 74 718 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 744
70 % 35 74 790
50 % 35 77 796
40 % 44 496 40
30 % 44 496 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 577
95 % 35 74 710 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 734
70 % 35 74 779
50 % 35 221 203
40 % 35 222 218
30 % 35 222 235
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 615
95 % 33 70 755 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 787
70 % 33 70 829
50 % 33 70 887
40 % 33 70 916
30 % 33 70 907
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 578
95 % 35 74 711 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 735
70 % 35 74 780
50 % 35 74 830
40 % 44 451 51
30 % 44 477 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 647
95 % 35 68 788 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 820
70 % 35 68 870
50 % 35 68 922
40 % 35 70 919
30 % 35 71 900
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 643
95 % 35 68 798 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 830
70 % 35 68 881
50 % 35 68 929
40 % 35 68 956
30 % 35 70 913
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60829
95 % 3 5 15894 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15549
70 % 3 5 14477
50 % 3 5 12780
40 % 3 5 11446
30 % 3 5 9741
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2887
95 % 3 21 3227 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3288
70 % 3 21 3234
50 % 7 30 2201
40 % 7 164 283
30 % 9 168 289
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 655
95 % 35 68 783 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 814
70 % 35 68 865
50 % 35 69 899
40 % 35 69 933
30 % 35 69 918
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57257
95 % 35 68 791 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 823
70 % 35 68 874
50 % 35 207 209
40 % 35 207 229
30 % 35 207 246
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 640
95 % 35 68 780 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 811
70 % 35 68 861
50 % 35 68 915
40 % 35 202 234
30 % 35 202 250
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 652
95 % 35 68 795 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 827
70 % 35 68 858
50 % 35 68 927
40 % 35 212 226
30 % 45 636 41
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2333
95 % 35 68 796 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 828
70 % 35 68 878
50 % 35 205 210
40 % 35 205 230
30 % 35 205 248
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63257
95 % 35 74 715 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 739
70 % 35 74 783
50 % 35 74 837
40 % 35 220 219
30 % 35 220 237
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 926
95 % 35 74 702 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 727
70 % 35 74 773
50 % 35 74 823
40 % 35 76 835
30 % 36 78 815
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 580
95 % 35 74 713 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 738
70 % 35 74 782
50 % 35 74 835
40 % 36 214 221
30 % 36 214 239
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2902
95 % 3 21 3240 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 810
70 % 35 68 859
50 % 51 108 412
40 % 58 133 331
30 % 72 292 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63255
95 % 1 1 51510
90 % 1 7 11754
70 % 3 27 2526
50 % 35 74 824
40 % 35 79 801
30 % 35 79 804
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 576
95 % 35 74 708 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 724
70 % 35 74 770
50 % 35 74 827
40 % 36 78 823
30 % 36 78 819

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CC7 19 S 50S ribosomal protein L23P 2238
20 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
21 3CCE 19 S 50S ribosomal protein L23P 2238
22 3G6E 20 S 50S ribosomal protein L23P 2238
23 3CPW 20 R 50S ribosomal protein L23P 2238
24 3CCU 19 S 50S ribosomal protein L23P 2238
25 1VQ6 22 S 50S ribosomal protein L23P 2238
26 1M90 21 T RIBOSOMAL PROTEIN L23 2238
27 3CCL 19 S 50S ribosomal protein L23P 2238
28 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
29 1YJ9 21 S 50S ribosomal protein L23P 2238
30 3CD6 19 S 50S ribosomal protein L23P 2238
31 3CCV 19 S 50S ribosomal protein L23P 2238
32 3CC4 19 S 50S ribosomal protein L23P 2238
33 2OTL 20 S 50S ribosomal protein L23P 2238
34 3G71 20 S 50S ribosomal protein L23P 2238
35 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
36 1VQ4 21 S 50S ribosomal protein L23P 2238
37 1YJN 21 S 50S ribosomal protein L23P 2238
38 3CMA 19 S 50S ribosomal protein L23P 2238
39 3CCS 19 S 50S ribosomal protein L23P 2238
40 3CCQ 19 S 50S ribosomal protein L23P 2238
41 3I56 19 S 50S ribosomal protein L23P 2238
42 3CCR 19 S 50S ribosomal protein L23P 2238
43 2OTJ 20 S 50S ribosomal protein L23P 2238
44 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
45 3OW2 20 R 50S ribosomal protein L23P 2238
46 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
47 1QVG 21 R 50S ribosomal protein L23P 2238
48 3CME 19 S 50S ribosomal protein L23P 2238
49 2QEX 20 S 50S ribosomal protein L23P 2238
50 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
51 1N8R 20 T 50S ribosomal protein L23P 2238
52 1Q81 21 T 50S ribosomal protein L23P 2238
53 1Q82 21 T 50S ribosomal protein L23P 2238
54 1QVF 21 R 50S ribosomal protein L23P 2238
55 1NJI 20 T 50S ribosomal protein L23P 2238
56 1K73 20 T RIBOSOMAL PROTEIN L23 2238
57 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
58 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
59 3I55 20 S 50S ribosomal protein L23P 2238
60 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
61 1Q86 21 T 50S ribosomal protein L23P 2238
62 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
63 3G4S 20 S 50S ribosomal protein L23P 2238
64 3CCJ 19 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4ADX 29 S RPL23 145262
73 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
74 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274