Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 846
95 % 35 68 676 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 706
70 % 35 68 761
50 % 35 177 202
40 % 43 531 20
30 % 43 531 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60136
95 % 1 1 41940
90 % 1 1 39881
70 % 35 68 751
50 % 35 173 209
40 % 35 173 230
30 % 35 173 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 431
95 % 35 74 603 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 632
70 % 35 74 669
50 % 35 74 714
40 % 35 74 747
30 % 42 511 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 429
95 % 35 74 601 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 630
70 % 35 74 666
50 % 35 76 688
40 % 35 76 721
30 % 35 79 686
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 487
95 % 35 68 677 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 708
70 % 35 68 763
50 % 35 70 775
40 % 35 70 807
30 % 35 70 798
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2224
95 % 35 68 674 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 703
70 % 35 68 758
50 % 35 68 805
40 % 35 72 778
30 % 35 72 770
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 489
95 % 35 68 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 712
70 % 35 68 767
50 % 35 70 776
40 % 35 70 808
30 % 35 71 783
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 504
95 % 35 68 672 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 701
70 % 35 68 755
50 % 35 68 802
40 % 35 68 837
30 % 35 176 231
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 436
95 % 35 74 608 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 637
70 % 35 74 677
50 % 35 76 692
40 % 35 78 701
30 % 42 417 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 435
95 % 35 74 607 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 636
70 % 35 74 675
50 % 35 181 200
40 % 35 181 219
30 % 35 181 227
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 464
95 % 33 70 653 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 33 70 679
70 % 33 70 733
50 % 33 70 779
40 % 33 70 812
30 % 33 70 802
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 437
95 % 35 74 609
90 % 35 74 638
70 % 35 74 678
50 % 35 74 722
40 % 42 381 58
30 % 42 407 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 485
95 % 35 68 673 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 702
70 % 35 68 756
50 % 35 68 803
40 % 35 70 804
30 % 35 71 781
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 491
95 % 35 68 683 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 714
70 % 35 68 769
50 % 35 68 811
40 % 35 68 844
30 % 35 68 831
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63501
95 % 3 5 14264 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 13993
70 % 3 5 13129
50 % 3 5 11685
40 % 3 5 10598
30 % 3 5 9190
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69819
95 % 1 1 48393
90 % 1 1 45966
70 % 3 21 2915
50 % 7 30 1938
40 % 7 130 299
30 % 26 153 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 493
95 % 35 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 717
70 % 35 68 772
50 % 35 69 792
40 % 35 69 826
30 % 35 69 816
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71234
95 % 35 68 687 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 718
70 % 35 68 773
50 % 35 174 205
40 % 35 174 229
30 % 35 174 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 490
95 % 35 68 682 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 713
70 % 35 68 768
50 % 35 68 810
40 % 35 68 843
30 % 35 170 242
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 484
95 % 35 68 671 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 699
70 % 35 68 753
50 % 35 68 801
40 % 35 175 224
30 % 43 522 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2207
95 % 35 68 669 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 697
70 % 35 68 750
50 % 35 172 208
40 % 35 174 228
30 % 35 174 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53317
95 % 35 74 593 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 624
70 % 35 74 662
50 % 35 74 708
40 % 35 181 217
30 % 35 181 225
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10078
95 % 35 74 597 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 628
70 % 35 74 664
50 % 35 74 710
40 % 35 76 719
30 % 36 78 693
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 430
95 % 35 74 602 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 631
70 % 35 74 667
50 % 35 74 712
40 % 36 181 218
30 % 36 181 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2238
95 % 3 21 2881 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 707
70 % 35 68 762
50 % 50 105 334
40 % 57 123 282
30 % 57 125 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62404
95 % 1 1 43202
90 % 1 7 10170
70 % 3 27 2169
50 % 35 74 713
40 % 35 79 691
30 % 35 79 688
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 432
95 % 35 74 604 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 633
70 % 35 74 672
50 % 35 74 718
40 % 36 77 714
30 % 36 78 697

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CC7 19 S 50S ribosomal protein L23P 2238
20 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
21 3CCE 19 S 50S ribosomal protein L23P 2238
22 3G6E 20 S 50S ribosomal protein L23P 2238
23 3CPW 20 R 50S ribosomal protein L23P 2238
24 3CCU 19 S 50S ribosomal protein L23P 2238
25 1VQ6 22 S 50S ribosomal protein L23P 2238
26 1M90 21 T RIBOSOMAL PROTEIN L23 2238
27 3CCL 19 S 50S ribosomal protein L23P 2238
28 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
29 1YJ9 21 S 50S ribosomal protein L23P 2238
30 3CD6 19 S 50S ribosomal protein L23P 2238
31 3CCV 19 S 50S ribosomal protein L23P 2238
32 3CC4 19 S 50S ribosomal protein L23P 2238
33 2OTL 20 S 50S ribosomal protein L23P 2238
34 3G71 20 S 50S ribosomal protein L23P 2238
35 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
36 1VQ4 21 S 50S ribosomal protein L23P 2238
37 1YJN 21 S 50S ribosomal protein L23P 2238
38 3CMA 19 S 50S ribosomal protein L23P 2238
39 3CCS 19 S 50S ribosomal protein L23P 2238
40 3CCQ 19 S 50S ribosomal protein L23P 2238
41 3I56 19 S 50S ribosomal protein L23P 2238
42 3CCR 19 S 50S ribosomal protein L23P 2238
43 2OTJ 20 S 50S ribosomal protein L23P 2238
44 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
45 3OW2 20 R 50S ribosomal protein L23P 2238
46 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
47 1QVG 21 R 50S ribosomal protein L23P 2238
48 3CME 19 S 50S ribosomal protein L23P 2238
49 2QEX 20 S 50S ribosomal protein L23P 2238
50 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
51 1N8R 20 T 50S ribosomal protein L23P 2238
52 1Q81 21 T 50S ribosomal protein L23P 2238
53 1Q82 21 T 50S ribosomal protein L23P 2238
54 1QVF 21 R 50S ribosomal protein L23P 2238
55 1NJI 20 T 50S ribosomal protein L23P 2238
56 1K73 20 T RIBOSOMAL PROTEIN L23 2238
57 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
58 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
59 3I55 20 S 50S ribosomal protein L23P 2238
60 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
61 1Q86 21 T 50S ribosomal protein L23P 2238
62 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
63 3G4S 20 S 50S ribosomal protein L23P 2238
64 3CCJ 19 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4ADX 29 S RPL23 145262
73 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
74 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274