Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 901
95 % 35 68 722 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 754
70 % 35 68 801
50 % 35 190 200
40 % 43 562 20
30 % 43 562 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63068
95 % 1 1 43973
90 % 1 1 41727
70 % 35 68 792
50 % 35 187 201
40 % 35 187 221
30 % 35 187 231
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 463
95 % 35 74 642 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 669
70 % 35 74 715
50 % 35 74 767
40 % 35 74 804
30 % 42 539 41
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 461
95 % 35 74 640 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 667
70 % 35 74 712
50 % 35 76 743
40 % 35 76 779
30 % 35 79 738
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 531
95 % 35 68 724 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 804
50 % 35 70 815
40 % 35 70 856
30 % 35 70 839
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2382
95 % 35 68 720 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 753
70 % 35 68 800
50 % 35 68 846
40 % 35 72 826
30 % 35 72 814
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 532
95 % 35 68 726 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 759
70 % 35 68 806
50 % 35 70 816
40 % 35 70 857
30 % 35 71 827
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 544
95 % 35 68 718 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 751
70 % 35 68 797
50 % 35 68 843
40 % 35 68 882
30 % 35 190 227
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 469
95 % 35 74 647 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 674
70 % 35 74 718
50 % 35 76 748
40 % 35 78 758
30 % 42 435 61
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 645 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 673
70 % 35 74 717
50 % 35 194 198
40 % 35 195 210
30 % 35 195 222
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 501
95 % 33 70 696 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 724
70 % 33 70 767
50 % 33 70 817
40 % 33 70 858
30 % 33 70 841
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 470
95 % 35 74 648 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 675
70 % 35 74 719
50 % 35 74 771
40 % 42 396 53
30 % 42 422 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 529
95 % 35 68 719 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 798
50 % 35 68 844
40 % 35 70 855
30 % 35 71 824
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 534
95 % 35 68 728 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 761
70 % 35 68 808
50 % 35 68 851
40 % 35 68 885
30 % 35 68 867
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66605
95 % 3 5 14999 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14726
70 % 3 5 13818
50 % 3 5 12268
40 % 3 5 11121
30 % 3 5 9655
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 73171
95 % 1 1 50693
90 % 1 1 48055
70 % 3 21 3076
50 % 7 30 2056
40 % 7 140 283
30 % 26 163 253
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 535
95 % 35 68 729 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 762
70 % 35 68 809
50 % 35 69 830
40 % 35 69 870
30 % 35 69 853
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74639
95 % 35 68 730 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 763
70 % 35 68 810
50 % 35 183 205
40 % 35 183 224
30 % 35 183 238
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 533
95 % 35 68 727 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 760
70 % 35 68 807
50 % 35 68 850
40 % 35 68 884
30 % 35 179 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 528
95 % 35 68 717 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 749
70 % 35 68 795
50 % 35 68 842
40 % 35 187 220
30 % 43 552 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2364
95 % 35 68 715 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 747
70 % 35 68 791
50 % 35 181 206
40 % 35 183 223
30 % 35 183 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55910
95 % 35 74 631 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 661
70 % 35 74 707
50 % 35 74 759
40 % 35 194 211
30 % 35 194 223
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10616
95 % 35 74 634 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 664
70 % 35 74 709
50 % 35 74 761
40 % 35 76 774
30 % 36 78 752
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 462
95 % 35 74 641 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 668
70 % 35 74 713
50 % 35 74 765
40 % 36 190 216
30 % 36 190 228
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2395
95 % 3 21 3049 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 756
70 % 35 68 803
50 % 51 107 374
40 % 58 128 282
30 % 58 130 288
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65434
95 % 1 1 45293
90 % 1 7 10686
70 % 3 27 2296
50 % 35 74 766
40 % 35 79 744
30 % 35 79 741
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 465
95 % 35 74 643
90 % 35 74 670
70 % 35 74 716
50 % 35 74 770
40 % 36 77 768
30 % 36 78 758

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CC7 19 S 50S ribosomal protein L23P 2238
20 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
21 3CCE 19 S 50S ribosomal protein L23P 2238
22 3G6E 20 S 50S ribosomal protein L23P 2238
23 3CPW 20 R 50S ribosomal protein L23P 2238
24 3CCU 19 S 50S ribosomal protein L23P 2238
25 1VQ6 22 S 50S ribosomal protein L23P 2238
26 1M90 21 T RIBOSOMAL PROTEIN L23 2238
27 3CCL 19 S 50S ribosomal protein L23P 2238
28 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
29 1YJ9 21 S 50S ribosomal protein L23P 2238
30 3CD6 19 S 50S ribosomal protein L23P 2238
31 3CCV 19 S 50S ribosomal protein L23P 2238
32 3CC4 19 S 50S ribosomal protein L23P 2238
33 2OTL 20 S 50S ribosomal protein L23P 2238
34 3G71 20 S 50S ribosomal protein L23P 2238
35 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
36 1VQ4 21 S 50S ribosomal protein L23P 2238
37 1YJN 21 S 50S ribosomal protein L23P 2238
38 3CMA 19 S 50S ribosomal protein L23P 2238
39 3CCS 19 S 50S ribosomal protein L23P 2238
40 3CCQ 19 S 50S ribosomal protein L23P 2238
41 3I56 19 S 50S ribosomal protein L23P 2238
42 3CCR 19 S 50S ribosomal protein L23P 2238
43 2OTJ 20 S 50S ribosomal protein L23P 2238
44 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
45 3OW2 20 R 50S ribosomal protein L23P 2238
46 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
47 1QVG 21 R 50S ribosomal protein L23P 2238
48 3CME 19 S 50S ribosomal protein L23P 2238
49 2QEX 20 S 50S ribosomal protein L23P 2238
50 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
51 1N8R 20 T 50S ribosomal protein L23P 2238
52 1Q81 21 T 50S ribosomal protein L23P 2238
53 1Q82 21 T 50S ribosomal protein L23P 2238
54 1QVF 21 R 50S ribosomal protein L23P 2238
55 1NJI 20 T 50S ribosomal protein L23P 2238
56 1K73 20 T RIBOSOMAL PROTEIN L23 2238
57 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
58 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
59 3I55 20 S 50S ribosomal protein L23P 2238
60 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
61 1Q86 21 T 50S ribosomal protein L23P 2238
62 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
63 3G4S 20 S 50S ribosomal protein L23P 2238
64 3CCJ 19 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4V4N 6 AT 50S ribosomal protein L23P SEE REMARK 999 2190
73 4V6U 42 BT 50S ribosomal protein L23P 2261
74 4ADX 29 S RPL23 145262
75 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
76 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274