Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 823
95 % 36 68 652
90 % 36 68 679
70 % 36 68 722
50 % 36 175 200
40 % 36 175 220
30 % 44 509 30
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58425
95 % 1 1 40724
90 % 1 1 38770
70 % 36 68 714
50 % 36 171 205
40 % 36 171 229
30 % 36 171 235
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 413
95 % 36 74 576
90 % 36 74 606
70 % 36 74 637
50 % 36 74 685
40 % 36 74 724
30 % 43 491 36
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 411
95 % 36 74 574
90 % 36 74 604
70 % 36 74 634
50 % 36 76 659
40 % 36 76 700
30 % 36 79 670
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 463
95 % 36 68 653
90 % 36 68 681
70 % 36 68 724
50 % 36 70 746
40 % 36 70 784
30 % 36 70 779
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2151
95 % 36 68 651
90 % 36 68 677
70 % 36 68 720
50 % 36 68 773
40 % 36 72 751
30 % 36 72 747
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 465
95 % 36 68 656
90 % 36 68 683
70 % 36 68 728
50 % 36 70 748
40 % 36 70 786
30 % 36 71 761
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 478
95 % 36 68 649
90 % 36 68 675
70 % 36 68 717
50 % 36 68 770
40 % 36 68 806
30 % 36 174 228
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 419
95 % 36 74 581
90 % 36 74 610
70 % 36 74 643
50 % 36 76 662
40 % 36 78 677
30 % 43 399 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 579
90 % 36 74 609
70 % 36 74 642
50 % 36 179 194
40 % 36 179 212
30 % 36 179 224
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 444
95 % 34 70 627
90 % 34 70 654
70 % 34 70 697
50 % 34 70 749
40 % 34 70 789
30 % 34 70 783
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 582
90 % 36 74 611
70 % 36 74 644
50 % 36 74 690
40 % 36 74 727
30 % 36 74 725
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 461
95 % 36 68 650
90 % 36 68 676
70 % 36 68 718
50 % 36 68 771
40 % 36 70 781
30 % 36 71 758
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 658
90 % 36 68 685
70 % 36 68 730
50 % 36 68 777
40 % 36 68 811
30 % 36 68 804
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61743
95 % 3 5 13809
90 % 3 5 13556
70 % 3 5 12721
50 % 3 5 11366
40 % 3 5 10309
30 % 3 5 8948
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68007
95 % 1 1 47126
90 % 1 1 44816
70 % 3 21 2821
50 % 7 30 1890
40 % 7 128 296
30 % 26 151 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 686
70 % 36 68 733
50 % 36 69 758
40 % 36 69 799
30 % 36 69 795
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69405
95 % 36 68 660
90 % 36 68 687
70 % 36 68 734
50 % 36 172 202
40 % 36 172 227
30 % 36 172 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 466
95 % 36 68 657
90 % 36 68 684
70 % 36 68 729
50 % 36 68 776
40 % 36 68 810
30 % 36 168 241
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 460
95 % 36 68 648
90 % 36 68 674
70 % 36 68 716
50 % 36 68 769
40 % 36 173 223
30 % 44 500 32
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2135
95 % 36 68 646
90 % 36 68 672
70 % 36 68 713
50 % 36 170 204
40 % 36 172 226
30 % 36 172 231
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51719
95 % 36 74 565
90 % 36 74 596
70 % 36 74 629
50 % 36 74 679
40 % 36 179 210
30 % 36 179 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9738
95 % 36 74 569
90 % 36 74 601
70 % 36 74 633
50 % 36 74 681
40 % 36 76 698
30 % 37 78 679
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 412
95 % 36 74 575
90 % 36 74 605
70 % 36 74 635
50 % 36 74 683
40 % 37 179 211
30 % 37 179 223
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2161
95 % 3 21 2792
90 % 36 68 680
70 % 36 68 723
50 % 51 105 316
40 % 58 120 286
30 % 58 122 283
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60656
95 % 1 1 41965
90 % 1 7 9829
70 % 3 27 2100
50 % 36 74 684
40 % 36 79 666
30 % 36 79 673
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 414
95 % 36 74 577
90 % 36 74 607
70 % 36 74 640
50 % 36 74 689
40 % 37 77 691
30 % 37 78 682

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CCJ 19 S 50S ribosomal protein L23P 2238
20 3CC7 19 S 50S ribosomal protein L23P 2238
21 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
22 3CCE 19 S 50S ribosomal protein L23P 2238
23 3G6E 20 S 50S ribosomal protein L23P 2238
24 3CPW 20 R 50S ribosomal protein L23P 2238
25 3CCU 19 S 50S ribosomal protein L23P 2238
26 1VQ6 22 S 50S ribosomal protein L23P 2238
27 1M90 21 T RIBOSOMAL PROTEIN L23 2238
28 3CCL 19 S 50S ribosomal protein L23P 2238
29 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
30 1YJ9 21 S 50S ribosomal protein L23P 2238
31 3CD6 19 S 50S ribosomal protein L23P 2238
32 3CCV 19 S 50S ribosomal protein L23P 2238
33 3CC4 19 S 50S ribosomal protein L23P 2238
34 2OTL 20 S 50S ribosomal protein L23P 2238
35 3G71 20 S 50S ribosomal protein L23P 2238
36 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
37 1VQ4 21 S 50S ribosomal protein L23P 2238
38 1YJN 21 S 50S ribosomal protein L23P 2238
39 3CMA 19 S 50S ribosomal protein L23P 2238
40 3CCS 19 S 50S ribosomal protein L23P 2238
41 3CCQ 19 S 50S ribosomal protein L23P 2238
42 3I56 19 S 50S ribosomal protein L23P 2238
43 3CCR 19 S 50S ribosomal protein L23P 2238
44 2OTJ 20 S 50S ribosomal protein L23P 2238
45 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
46 3OW2 20 R 50S ribosomal protein L23P 2238
47 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
48 1QVG 21 R 50S ribosomal protein L23P 2238
49 3CME 19 S 50S ribosomal protein L23P 2238
50 2QEX 20 S 50S ribosomal protein L23P 2238
51 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
52 1N8R 20 T 50S ribosomal protein L23P 2238
53 1Q81 21 T 50S ribosomal protein L23P 2238
54 1Q82 21 T 50S ribosomal protein L23P 2238
55 1QVF 21 R 50S ribosomal protein L23P 2238
56 1NJI 20 T 50S ribosomal protein L23P 2238
57 1K73 20 T RIBOSOMAL PROTEIN L23 2238
58 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
59 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
60 3I55 20 S 50S ribosomal protein L23P 2238
61 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
62 1Q86 21 T 50S ribosomal protein L23P 2238
63 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
64 3G4S 20 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4V4N 6 AT 50S ribosomal protein L23P SEE REMARK 999 2190
73 4V6U 42 BT 50S ribosomal protein L23P 2261
74 4ADX 29 S RPL23 145262
75 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
76 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274