Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 741
95 % 36 68 526
90 % 36 68 554
70 % 36 68 608
50 % 36 141 223
40 % 36 141 254
30 % 43 424 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54268
95 % 1 1 37904
90 % 1 1 36116
70 % 36 68 602
50 % 36 136 236
40 % 36 136 263
30 % 36 136 274
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 461
90 % 36 74 488
70 % 36 74 533
50 % 36 74 621
40 % 36 74 664
30 % 42 413 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 459
90 % 36 74 486
70 % 36 74 530
50 % 36 76 590
40 % 36 76 640
30 % 36 78 614
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 558
70 % 36 68 611
50 % 36 70 672
40 % 36 70 714
30 % 36 70 715
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1921
95 % 36 68 525
90 % 36 68 553
70 % 36 68 607
50 % 36 68 700
40 % 36 70 712
30 % 36 71 698
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 530
90 % 36 68 559
70 % 36 68 612
50 % 36 70 674
40 % 36 70 716
30 % 36 71 701
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 365
95 % 36 68 523
90 % 36 68 551
70 % 36 68 605
50 % 36 68 697
40 % 36 68 731
30 % 36 140 266
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 467
90 % 36 74 495
70 % 36 74 540
50 % 36 76 592
40 % 36 78 612
30 % 42 355 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 314
95 % 36 74 465
90 % 36 74 493
70 % 36 74 538
50 % 36 145 214
40 % 36 145 245
30 % 36 145 256
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 341
95 % 34 70 506
90 % 34 70 531
70 % 34 70 582
50 % 34 70 675
40 % 34 70 717
30 % 34 70 717
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 468
90 % 36 74 496
70 % 36 74 541
50 % 36 74 627
40 % 36 74 670
30 % 36 74 663
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 524
90 % 36 68 552
70 % 36 68 606
50 % 36 68 698
40 % 36 70 711
30 % 36 71 697
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 68 702
40 % 36 68 734
30 % 36 68 733
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57409
95 % 3 5 12774
90 % 3 5 12536
70 % 3 5 11797
50 % 3 5 10576
40 % 3 5 9648
30 % 3 5 8401
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63401
95 % 1 1 44014
90 % 1 1 41942
70 % 3 21 2566
50 % 7 30 1727
40 % 7 94 376
30 % 26 117 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 534
90 % 36 68 563
70 % 36 68 616
50 % 36 69 688
40 % 36 69 727
30 % 36 69 729
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64744
95 % 36 68 536
90 % 36 68 564
70 % 36 68 617
50 % 36 138 228
40 % 36 138 261
30 % 36 138 272
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 531
90 % 36 68 560
70 % 36 68 613
50 % 36 68 701
40 % 36 68 733
30 % 36 136 275
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 522
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 140 256
30 % 43 419 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1897
95 % 36 68 520
90 % 36 68 548
70 % 36 68 601
50 % 36 136 235
40 % 36 138 259
30 % 36 138 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47979
95 % 36 74 451
90 % 36 74 479
70 % 36 74 525
50 % 36 74 614
40 % 36 145 242
30 % 36 145 252
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8924
95 % 36 74 454
90 % 36 74 482
70 % 36 74 528
50 % 36 74 616
40 % 36 76 639
30 % 36 77 623
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 460
90 % 36 74 487
70 % 36 74 531
50 % 36 74 619
40 % 37 145 244
30 % 37 145 255
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1932
95 % 3 21 2510
90 % 36 68 557
70 % 36 68 610
50 % 51 95 350
40 % 58 109 313
30 % 58 111 326
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56389
95 % 1 1 39085
90 % 1 7 9082
70 % 3 27 1885
50 % 36 74 620
40 % 36 79 600
30 % 36 79 603
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 462
90 % 36 74 490
70 % 36 74 535
50 % 36 74 624
40 % 37 77 623
30 % 37 78 617

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CCJ 19 S 50S ribosomal protein L23P 2238
20 3CC7 19 S 50S ribosomal protein L23P 2238
21 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
22 3CCE 19 S 50S ribosomal protein L23P 2238
23 3G6E 20 S 50S ribosomal protein L23P 2238
24 3CPW 20 R 50S ribosomal protein L23P 2238
25 3CCU 19 S 50S ribosomal protein L23P 2238
26 1VQ6 22 S 50S ribosomal protein L23P 2238
27 1M90 21 T RIBOSOMAL PROTEIN L23 2238
28 3CCL 19 S 50S ribosomal protein L23P 2238
29 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
30 1YJ9 21 S 50S ribosomal protein L23P 2238
31 3CD6 19 S 50S ribosomal protein L23P 2238
32 3CCV 19 S 50S ribosomal protein L23P 2238
33 3CC4 19 S 50S ribosomal protein L23P 2238
34 2OTL 20 S 50S ribosomal protein L23P 2238
35 3G71 20 S 50S ribosomal protein L23P 2238
36 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
37 1VQ4 21 S 50S ribosomal protein L23P 2238
38 1YJN 21 S 50S ribosomal protein L23P 2238
39 3CMA 19 S 50S ribosomal protein L23P 2238
40 3CCS 19 S 50S ribosomal protein L23P 2238
41 3CCQ 19 S 50S ribosomal protein L23P 2238
42 3I56 19 S 50S ribosomal protein L23P 2238
43 3CCR 19 S 50S ribosomal protein L23P 2238
44 2OTJ 20 S 50S ribosomal protein L23P 2238
45 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
46 3OW2 20 R 50S ribosomal protein L23P 2238
47 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
48 1QVG 21 R 50S ribosomal protein L23P 2238
49 3CME 19 S 50S ribosomal protein L23P 2238
50 2QEX 20 S 50S ribosomal protein L23P 2238
51 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
52 1N8R 20 T 50S ribosomal protein L23P 2238
53 1Q81 21 T 50S ribosomal protein L23P 2238
54 1Q82 21 T 50S ribosomal protein L23P 2238
55 1QVF 21 R 50S ribosomal protein L23P 2238
56 1NJI 20 T 50S ribosomal protein L23P 2238
57 1K73 20 T RIBOSOMAL PROTEIN L23 2238
58 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
59 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
60 3I55 20 S 50S ribosomal protein L23P 2238
61 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
62 1Q86 21 T 50S ribosomal protein L23P 2238
63 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
64 3G4S 20 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4V4N 6 AT 50S ribosomal protein L23P SEE REMARK 999 2190
73 4V6U 42 BT 50S ribosomal protein L23P 2261
74 4ADX 29 S RPL23 145262
75 4V7H 44 BT 60S ribosomal protein L25 5541
76 4V4B 39 BT 60S ribosomal protein L25 4932
77 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
78 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274