Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 749
95 % 36 68 531
90 % 36 68 559
70 % 36 68 612
50 % 36 144 215
40 % 36 144 245
30 % 44 431 32
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54678
95 % 1 1 38174
90 % 1 1 36367
70 % 36 68 606
50 % 36 139 228
40 % 36 139 259
30 % 36 139 268
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 312
95 % 36 74 465
90 % 36 74 492
70 % 36 74 537
50 % 36 74 626
40 % 36 74 670
30 % 43 420 40
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 463
90 % 36 74 490
70 % 36 74 534
50 % 36 76 604
40 % 36 76 647
30 % 36 78 627
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 533
90 % 36 68 562
70 % 36 68 614
50 % 36 70 677
40 % 36 70 719
30 % 36 70 724
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1948
95 % 36 68 530
90 % 36 68 558
70 % 36 68 611
50 % 36 68 705
40 % 36 70 716
30 % 36 71 707
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 358
95 % 36 68 534
90 % 36 68 564
70 % 36 68 616
50 % 36 70 679
40 % 36 70 721
30 % 36 71 710
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 367
95 % 36 68 528
90 % 36 68 556
70 % 36 68 609
50 % 36 68 702
40 % 36 68 738
30 % 36 143 257
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 317
95 % 36 74 471
90 % 36 74 499
70 % 36 74 544
50 % 36 76 606
40 % 36 78 622
30 % 43 359 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 469
90 % 36 74 497
70 % 36 74 542
50 % 36 148 213
40 % 36 148 239
30 % 36 148 251
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 344
95 % 34 70 510
90 % 34 70 536
70 % 34 70 588
50 % 34 70 680
40 % 34 70 722
30 % 34 70 725
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 472
90 % 36 74 500
70 % 36 74 545
50 % 36 74 633
40 % 36 74 675
30 % 36 74 672
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 529
90 % 36 68 557
70 % 36 68 610
50 % 36 68 703
40 % 36 70 715
30 % 36 71 706
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 360
95 % 36 68 536
90 % 36 68 566
70 % 36 68 618
50 % 36 68 707
40 % 36 68 741
30 % 36 68 744
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57836
95 % 3 5 12901
90 % 3 5 12660
70 % 3 5 11920
50 % 3 5 10681
40 % 3 5 9738
30 % 3 5 8476
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63850
95 % 1 1 44310
90 % 1 1 42217
70 % 3 21 2593
50 % 7 30 1737
40 % 7 97 360
30 % 26 120 314
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 568
70 % 36 68 620
50 % 36 69 693
40 % 36 69 732
30 % 36 69 739
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65195
95 % 36 68 540
90 % 36 68 569
70 % 36 68 621
50 % 36 141 222
40 % 36 141 255
30 % 36 141 264
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 535
90 % 36 68 565
70 % 36 68 617
50 % 36 68 706
40 % 36 68 740
30 % 36 138 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 527
90 % 36 68 555
70 % 36 68 608
50 % 36 68 701
40 % 36 143 247
30 % 44 426 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1924
95 % 36 68 525
90 % 36 68 553
70 % 36 68 605
50 % 36 139 227
40 % 36 141 254
30 % 36 141 262
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48358
95 % 36 74 455
90 % 36 74 483
70 % 36 74 529
50 % 36 74 618
40 % 36 148 237
30 % 36 148 249
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8996
95 % 36 74 458
90 % 36 74 486
70 % 36 74 532
50 % 36 74 621
40 % 36 76 646
30 % 36 77 635
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 464
90 % 36 74 491
70 % 36 74 535
50 % 36 74 624
40 % 37 148 238
30 % 37 148 250
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1958
95 % 3 21 2541
90 % 36 68 561
70 % 36 68 613
50 % 51 96 348
40 % 58 110 309
30 % 58 112 323
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56812
95 % 1 1 39361
90 % 1 7 9158
70 % 3 27 1900
50 % 36 74 625
40 % 36 79 609
30 % 36 79 616
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 466
90 % 36 74 494
70 % 36 74 539
50 % 36 74 629
40 % 37 77 633
30 % 37 78 630

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CCJ 19 S 50S ribosomal protein L23P 2238
20 3CC7 19 S 50S ribosomal protein L23P 2238
21 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
22 3CCE 19 S 50S ribosomal protein L23P 2238
23 3G6E 20 S 50S ribosomal protein L23P 2238
24 3CPW 20 R 50S ribosomal protein L23P 2238
25 3CCU 19 S 50S ribosomal protein L23P 2238
26 1VQ6 22 S 50S ribosomal protein L23P 2238
27 1M90 21 T RIBOSOMAL PROTEIN L23 2238
28 3CCL 19 S 50S ribosomal protein L23P 2238
29 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
30 1YJ9 21 S 50S ribosomal protein L23P 2238
31 3CD6 19 S 50S ribosomal protein L23P 2238
32 3CCV 19 S 50S ribosomal protein L23P 2238
33 3CC4 19 S 50S ribosomal protein L23P 2238
34 2OTL 20 S 50S ribosomal protein L23P 2238
35 3G71 20 S 50S ribosomal protein L23P 2238
36 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
37 1VQ4 21 S 50S ribosomal protein L23P 2238
38 1YJN 21 S 50S ribosomal protein L23P 2238
39 3CMA 19 S 50S ribosomal protein L23P 2238
40 3CCS 19 S 50S ribosomal protein L23P 2238
41 3CCQ 19 S 50S ribosomal protein L23P 2238
42 3I56 19 S 50S ribosomal protein L23P 2238
43 3CCR 19 S 50S ribosomal protein L23P 2238
44 2OTJ 20 S 50S ribosomal protein L23P 2238
45 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
46 3OW2 20 R 50S ribosomal protein L23P 2238
47 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
48 1QVG 21 R 50S ribosomal protein L23P 2238
49 3CME 19 S 50S ribosomal protein L23P 2238
50 2QEX 20 S 50S ribosomal protein L23P 2238
51 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
52 1N8R 20 T 50S ribosomal protein L23P 2238
53 1Q81 21 T 50S ribosomal protein L23P 2238
54 1Q82 21 T 50S ribosomal protein L23P 2238
55 1QVF 21 R 50S ribosomal protein L23P 2238
56 1NJI 20 T 50S ribosomal protein L23P 2238
57 1K73 20 T RIBOSOMAL PROTEIN L23 2238
58 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
59 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
60 3I55 20 S 50S ribosomal protein L23P 2238
61 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
62 1Q86 21 T 50S ribosomal protein L23P 2238
63 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
64 3G4S 20 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4V4N 6 AT 50S ribosomal protein L23P SEE REMARK 999 2190
73 4V6U 42 BT 50S ribosomal protein L23P 2261
74 4ADX 29 S RPL23 145262
75 4V7H 44 BT 60S ribosomal protein L25 5541
76 4V4B 39 BT 60S ribosomal protein L25 4932
77 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
78 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274