Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 759
95 % 36 68 543
90 % 36 68 573
70 % 36 68 623
50 % 36 146 222
40 % 36 146 247
30 % 44 445 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55629
95 % 1 1 38815
90 % 1 1 36984
70 % 36 68 616
50 % 36 142 230
40 % 36 142 258
30 % 36 142 266
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 476
90 % 36 74 504
70 % 36 74 548
50 % 36 74 633
40 % 36 74 680
30 % 43 434 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 474
90 % 36 74 502
70 % 36 74 545
50 % 36 76 613
40 % 36 76 656
30 % 36 78 642
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 545
90 % 36 68 575
70 % 36 68 626
50 % 36 70 683
40 % 36 70 730
30 % 36 70 734
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1996
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 68 709
40 % 36 70 727
30 % 36 71 716
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 368
95 % 36 68 547
90 % 36 68 577
70 % 36 68 629
50 % 36 70 684
40 % 36 70 731
30 % 36 71 719
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 378
95 % 36 68 540
90 % 36 68 569
70 % 36 68 620
50 % 36 68 707
40 % 36 68 746
30 % 36 145 258
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 481
90 % 36 74 510
70 % 36 74 555
50 % 36 76 617
40 % 36 78 633
30 % 43 371 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 479
90 % 36 74 508
70 % 36 74 553
50 % 36 150 215
40 % 36 150 238
30 % 36 150 249
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 348
95 % 34 70 519
90 % 34 70 547
70 % 34 70 596
50 % 34 70 685
40 % 34 70 732
30 % 34 70 735
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 482
90 % 36 74 511
70 % 36 74 556
50 % 36 74 638
40 % 36 74 685
30 % 36 74 685
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 541
90 % 36 68 570
70 % 36 68 621
50 % 36 68 708
40 % 36 70 725
30 % 36 71 715
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 549
90 % 36 68 579
70 % 36 68 631
50 % 36 68 712
40 % 36 68 750
30 % 36 68 755
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58841
95 % 3 5 13135
90 % 3 5 12894
70 % 3 5 12131
50 % 3 5 10854
40 % 3 5 9880
30 % 3 5 8590
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64935
95 % 1 1 45041
90 % 1 1 42898
70 % 3 21 2643
50 % 7 30 1776
40 % 7 99 365
30 % 26 122 310
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 550
90 % 36 68 580
70 % 36 68 632
50 % 36 69 698
40 % 36 69 740
30 % 36 69 747
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66291
95 % 36 68 552
90 % 36 68 582
70 % 36 68 633
50 % 36 143 224
40 % 36 143 252
30 % 36 143 261
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 548
90 % 36 68 578
70 % 36 68 630
50 % 36 68 711
40 % 36 68 749
30 % 36 140 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 539
90 % 36 68 568
70 % 36 68 619
50 % 36 68 706
40 % 36 145 248
30 % 44 440 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1973
95 % 36 68 537
90 % 36 68 565
70 % 36 68 615
50 % 36 141 229
40 % 36 143 251
30 % 36 143 260
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49182
95 % 36 74 467
90 % 36 74 496
70 % 36 74 541
50 % 36 74 627
40 % 36 150 235
30 % 36 150 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9195
95 % 36 74 470
90 % 36 74 499
70 % 36 74 544
50 % 36 74 629
40 % 36 76 655
30 % 36 77 651
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 475
90 % 36 74 503
70 % 36 74 546
50 % 36 74 631
40 % 37 151 234
30 % 37 151 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2005
95 % 3 21 2595
90 % 36 68 574
70 % 36 68 624
50 % 51 98 345
40 % 58 112 314
30 % 58 114 325
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57797
95 % 1 1 40025
90 % 1 7 9340
70 % 3 27 1949
50 % 36 74 632
40 % 36 79 620
30 % 36 79 630
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 477
90 % 36 74 506
70 % 36 74 551
50 % 36 74 636
40 % 37 77 645
30 % 37 78 645

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CCJ 19 S 50S ribosomal protein L23P 2238
20 3CC7 19 S 50S ribosomal protein L23P 2238
21 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
22 3CCE 19 S 50S ribosomal protein L23P 2238
23 3G6E 20 S 50S ribosomal protein L23P 2238
24 3CPW 20 R 50S ribosomal protein L23P 2238
25 3CCU 19 S 50S ribosomal protein L23P 2238
26 1VQ6 22 S 50S ribosomal protein L23P 2238
27 1M90 21 T RIBOSOMAL PROTEIN L23 2238
28 3CCL 19 S 50S ribosomal protein L23P 2238
29 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
30 1YJ9 21 S 50S ribosomal protein L23P 2238
31 3CD6 19 S 50S ribosomal protein L23P 2238
32 3CCV 19 S 50S ribosomal protein L23P 2238
33 3CC4 19 S 50S ribosomal protein L23P 2238
34 2OTL 20 S 50S ribosomal protein L23P 2238
35 3G71 20 S 50S ribosomal protein L23P 2238
36 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
37 1VQ4 21 S 50S ribosomal protein L23P 2238
38 1YJN 21 S 50S ribosomal protein L23P 2238
39 3CMA 19 S 50S ribosomal protein L23P 2238
40 3CCS 19 S 50S ribosomal protein L23P 2238
41 3CCQ 19 S 50S ribosomal protein L23P 2238
42 3I56 19 S 50S ribosomal protein L23P 2238
43 3CCR 19 S 50S ribosomal protein L23P 2238
44 2OTJ 20 S 50S ribosomal protein L23P 2238
45 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
46 3OW2 20 R 50S ribosomal protein L23P 2238
47 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
48 1QVG 21 R 50S ribosomal protein L23P 2238
49 3CME 19 S 50S ribosomal protein L23P 2238
50 2QEX 20 S 50S ribosomal protein L23P 2238
51 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
52 1N8R 20 T 50S ribosomal protein L23P 2238
53 1Q81 21 T 50S ribosomal protein L23P 2238
54 1Q82 21 T 50S ribosomal protein L23P 2238
55 1QVF 21 R 50S ribosomal protein L23P 2238
56 1NJI 20 T 50S ribosomal protein L23P 2238
57 1K73 20 T RIBOSOMAL PROTEIN L23 2238
58 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
59 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
60 3I55 20 S 50S ribosomal protein L23P 2238
61 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
62 1Q86 21 T 50S ribosomal protein L23P 2238
63 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
64 3G4S 20 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4V4N 6 AT 50S ribosomal protein L23P SEE REMARK 999 2190
73 4V6U 42 BT 50S ribosomal protein L23P 2261
74 4ADX 29 S RPL23 145262
75 4V7H 44 BT 60S ribosomal protein L25 5541
76 4V4B 39 BT 60S ribosomal protein L25 4932
77 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
78 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274