Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 856
95 % 35 68 690 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 719
70 % 35 68 772
50 % 35 178 202
40 % 43 534 20
30 % 43 534 33
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60591
95 % 1 1 42268
90 % 1 1 40182
70 % 35 68 763
50 % 35 174 207
40 % 35 174 230
30 % 35 174 240
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 446
95 % 35 74 618 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 646
70 % 35 74 685
50 % 35 74 736
40 % 35 74 768
30 % 42 514 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 444
95 % 35 74 616
90 % 35 74 644
70 % 35 74 682
50 % 35 76 706
40 % 35 76 741
30 % 35 79 697
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 504
95 % 35 68 691 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 721
70 % 35 68 774
50 % 35 70 791
40 % 35 70 826
30 % 35 70 815
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2248
95 % 35 68 689 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 717
70 % 35 68 770
50 % 35 68 819
40 % 35 72 798
30 % 35 72 790
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 505
95 % 35 68 693 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 723
70 % 35 68 776
50 % 35 70 792
40 % 35 70 827
30 % 35 71 801
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 515
95 % 35 68 687 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 715
70 % 35 68 767
50 % 35 68 816
40 % 35 68 852
30 % 35 177 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 450
95 % 35 74 622 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 650
70 % 35 74 693
50 % 35 76 711
40 % 35 78 717
30 % 42 419 58
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 449
95 % 35 74 621 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 649
70 % 35 74 690
50 % 35 182 198
40 % 35 182 217
30 % 35 182 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 478
95 % 33 70 666 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 690
70 % 33 70 743
50 % 33 70 793
40 % 33 70 828
30 % 33 70 817
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 451
95 % 35 74 623 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 651
70 % 35 74 694
50 % 35 74 743
40 % 42 383 58
30 % 42 409 65
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 501
95 % 35 68 688 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 716
70 % 35 68 768
50 % 35 68 817
40 % 35 70 823
30 % 35 71 800
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 507
95 % 35 68 695 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 725
70 % 35 68 778
50 % 35 68 823
40 % 35 68 856
30 % 35 68 842
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63972
95 % 3 5 14391 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 3 5 14115
70 % 3 5 13242
50 % 3 5 11773
40 % 3 5 10679
30 % 3 5 9262
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70314
95 % 1 1 48740
90 % 1 1 46284
70 % 3 21 2938
50 % 7 30 1965
40 % 7 131 300
30 % 26 154 266
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 508
95 % 35 68 696 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 726
70 % 35 68 779
50 % 35 69 804
40 % 35 69 840
30 % 35 69 831
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71735
95 % 35 68 697 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 35 68 727
70 % 35 68 780
50 % 35 175 203
40 % 35 175 226
30 % 35 175 237
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 506
95 % 35 68 694 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 724
70 % 35 68 777
50 % 35 68 822
40 % 35 68 855
30 % 35 171 243
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 500
95 % 35 68 686 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 713
70 % 35 68 765
50 % 35 68 815
40 % 35 176 223
30 % 43 525 36
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2231
95 % 35 68 684 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 711
70 % 35 68 762
50 % 35 173 206
40 % 35 175 225
30 % 35 175 236
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53734
95 % 35 74 608 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 638
70 % 35 74 678
50 % 35 74 729
40 % 35 182 215
30 % 35 182 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10176
95 % 35 74 612 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 642
70 % 35 74 680
50 % 35 74 731
40 % 35 76 739
30 % 36 78 706
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 445
95 % 35 74 617 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 645
70 % 35 74 683
50 % 35 74 734
40 % 36 182 216
30 % 36 182 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2260
95 % 3 21 2902 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 720
70 % 35 68 773
50 % 50 105 345
40 % 57 124 284
30 % 57 126 289
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62869
95 % 1 1 43533
90 % 1 7 10271
70 % 3 27 2202
50 % 35 74 735
40 % 35 79 705
30 % 35 79 699
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 447
95 % 35 74 619 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 647
70 % 35 74 688
50 % 35 74 740
40 % 36 77 733
30 % 36 78 712

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 21 S 50S ribosomal protein L23P 2238
2 1VQO 21 S 50S ribosomal protein L23P 2238
3 1VQ8 21 S 50S ribosomal protein L23P 2238
4 1S72 21 S 50S ribosomal protein L23P 2238
5 1JJ2 20 R RIBOSOMAL PROTEIN L23 2238
6 1YHQ 21 S 50S ribosomal protein L23P 2238
7 1VQP 21 S 50S ribosomal protein L23P 2238
8 1VQM 21 S 50S ribosomal protein L23P 2238
9 3CC2 19 S 50S ribosomal protein L23P 2238
10 1VQL 21 S 50S ribosomal protein L23P 2238
11 1VQK 21 S 50S ribosomal protein L23P 2238
12 1VQN 22 S 50S ribosomal protein L23P 2238
13 1YIJ 21 S 50S ribosomal protein L23P 2238
14 1YI2 21 S 50S ribosomal protein L23P 2238
15 1VQ9 21 S 50S ribosomal protein L23P 2238
16 1VQ7 21 S 50S ribosomal protein L23P 2238
17 3CCM 19 S 50S ribosomal protein L23P 2238
18 1VQ5 21 S 50S ribosomal protein L23P 2238
19 3CC7 19 S 50S ribosomal protein L23P 2238
20 1YIT 25 S 50S RIBOSOMAL PROTEIN L23P 2238
21 3CCE 19 S 50S ribosomal protein L23P 2238
22 3G6E 20 S 50S ribosomal protein L23P 2238
23 3CPW 20 R 50S ribosomal protein L23P 2238
24 3CCU 19 S 50S ribosomal protein L23P 2238
25 1VQ6 22 S 50S ribosomal protein L23P 2238
26 1M90 21 T RIBOSOMAL PROTEIN L23 2238
27 3CCL 19 S 50S ribosomal protein L23P 2238
28 1YJW 25 S 50S RIBOSOMAL PROTEIN L23P 2238
29 1YJ9 21 S 50S ribosomal protein L23P 2238
30 3CD6 19 S 50S ribosomal protein L23P 2238
31 3CCV 19 S 50S ribosomal protein L23P 2238
32 3CC4 19 S 50S ribosomal protein L23P 2238
33 2OTL 20 S 50S ribosomal protein L23P 2238
34 3G71 20 S 50S ribosomal protein L23P 2238
35 1FFK 18 P RIBOSOMAL PROTEIN L23 2238
36 1VQ4 21 S 50S ribosomal protein L23P 2238
37 1YJN 21 S 50S ribosomal protein L23P 2238
38 3CMA 19 S 50S ribosomal protein L23P 2238
39 3CCS 19 S 50S ribosomal protein L23P 2238
40 3CCQ 19 S 50S ribosomal protein L23P 2238
41 3I56 19 S 50S ribosomal protein L23P 2238
42 3CCR 19 S 50S ribosomal protein L23P 2238
43 2OTJ 20 S 50S ribosomal protein L23P 2238
44 1KQS 22 R RIBOSOMAL PROTEIN L23 2238
45 3OW2 20 R 50S ribosomal protein L23P 2238
46 3CXC 21 R RIBOSOMAL PROTEIN L23 2238
47 1QVG 21 R 50S ribosomal protein L23P 2238
48 3CME 19 S 50S ribosomal protein L23P 2238
49 2QEX 20 S 50S ribosomal protein L23P 2238
50 1KC8 20 T RIBOSOMAL PROTEIN L23 2238
51 1N8R 20 T 50S ribosomal protein L23P 2238
52 1Q81 21 T 50S ribosomal protein L23P 2238
53 1Q82 21 T 50S ribosomal protein L23P 2238
54 1QVF 21 R 50S ribosomal protein L23P 2238
55 1NJI 20 T 50S ribosomal protein L23P 2238
56 1K73 20 T RIBOSOMAL PROTEIN L23 2238
57 1K9M 20 T RIBOSOMAL PROTEIN L23 2238
58 1KD1 20 T RIBOSOMAL PROTEIN L23 2238
59 3I55 20 S 50S ribosomal protein L23P 2238
60 1K8A 20 T RIBOSOMAL PROTEIN L23 2238
61 1Q86 21 T 50S ribosomal protein L23P 2238
62 1M1K 20 T RIBOSOMAL PROTEIN L23 2238
63 3G4S 20 S 50S ribosomal protein L23P 2238
64 3CCJ 19 S 50S ribosomal protein L23P 2238
65 1W2B 23 R 50S RIBOSOMAL PROTEIN L23P 2238
66 2QA4 21 S 50S ribosomal protein L23P 2238
67 1Q7Y 21 T 50S ribosomal protein L23P 2238
68 4V4P 19 AT 50S ribosomal protein L23 274
69 4V4R 41 BX 50S ribosomal protein L23 274
70 4V4S 41 BX 50S ribosomal protein L23 274
71 4V4T 40 BX 50S ribosomal protein L23 274
72 4ADX 29 S RPL23 145262
73 1ML5 41 t 50S RIBOSOMAL PROTEIN L23 562
74 4V42 43 BT 50S RIBOSOMAL PROTEIN L23 274