Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 896
95 % 35 68 719 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 752
70 % 35 68 798
50 % 35 189 199
40 % 43 556 20
30 % 43 556 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62716
95 % 1 1 43742
90 % 1 1 41524
70 % 35 68 789
50 % 35 186 202
40 % 35 186 222
30 % 35 186 230
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 461
95 % 35 74 639 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 665
70 % 35 74 710
50 % 35 74 762
40 % 35 74 799
30 % 42 533 39
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 459
95 % 35 74 637 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 663
70 % 35 74 707
50 % 35 76 740
40 % 35 76 776
30 % 35 79 736
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 530
95 % 35 68 721 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 755
70 % 35 68 801
50 % 35 70 810
40 % 35 70 850
30 % 35 70 835
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2358
95 % 35 68 717 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 751
70 % 35 68 797
50 % 35 68 842
40 % 35 72 822
30 % 35 72 810
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 531
95 % 35 68 723 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 757
70 % 35 68 803
50 % 35 70 811
40 % 35 70 851
30 % 35 71 822
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 543
95 % 35 68 715 Flexibility: No
Max RMSD: 5.1, Avg RMSD: 0.4
PDBFlex
90 % 35 68 749
70 % 35 68 794
50 % 35 68 839
40 % 35 68 877
30 % 35 189 225
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 467
95 % 35 74 644 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 669
70 % 35 74 714
50 % 35 76 745
40 % 35 78 754
30 % 42 430 62
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 466
95 % 35 74 642 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 668
70 % 35 74 713
50 % 35 193 197
40 % 35 194 210
30 % 35 194 220
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 500
95 % 33 70 693 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 722
70 % 33 70 764
50 % 33 70 812
40 % 33 70 852
30 % 33 70 837
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 468
95 % 35 74 645 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 670
70 % 35 74 715
50 % 35 74 767
40 % 42 391 54
30 % 42 417 68
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 528
95 % 35 68 716 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 750
70 % 35 68 795
50 % 35 68 840
40 % 35 70 849
30 % 35 71 820
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 533
95 % 35 68 725 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 759
70 % 35 68 805
50 % 35 68 847
40 % 35 68 880
30 % 35 68 863
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66230
95 % 3 5 14919 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 14651
70 % 3 5 13752
50 % 3 5 12214
40 % 3 5 11069
30 % 3 5 9613
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72784
95 % 1 1 50450
90 % 1 1 47840
70 % 3 21 3048
50 % 7 30 2040
40 % 7 139 282
30 % 26 162 254
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 534
95 % 35 68 726 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 760
70 % 35 68 806
50 % 35 69 826
40 % 35 69 864
30 % 35 69 849
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74247
95 % 35 68 727 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 761
70 % 35 68 807
50 % 35 182 205
40 % 35 182 224
30 % 35 182 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 532
95 % 35 68 724 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 758
70 % 35 68 804
50 % 35 68 846
40 % 35 68 879
30 % 35 178 239
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 527
95 % 35 68 714 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 747
70 % 35 68 792
50 % 35 68 838
40 % 35 186 220
30 % 43 546 38
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2340
95 % 35 68 712 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 745
70 % 35 68 788
50 % 35 180 207
40 % 35 182 223
30 % 35 182 234
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 55591
95 % 35 74 629 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 657
70 % 35 74 702
50 % 35 74 754
40 % 35 193 211
30 % 35 193 221
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10553
95 % 35 74 632 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 660
70 % 35 74 704
50 % 35 74 756
40 % 35 76 771
30 % 36 78 749
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 460
95 % 35 74 638 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 664
70 % 35 74 708
50 % 35 74 760
40 % 36 189 216
30 % 36 189 226
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2371
95 % 3 21 3020 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 754
70 % 35 68 800
50 % 50 105 380
40 % 57 126 291
30 % 57 128 296
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65068
95 % 1 1 45054
90 % 1 7 10629
70 % 3 27 2275
50 % 35 74 761
40 % 35 79 742
30 % 35 79 739
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 463
95 % 35 74 640
90 % 35 74 666
70 % 35 74 711
50 % 35 74 765
40 % 36 77 765
30 % 36 78 755

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 20 R 50S ribosomal protein L22P 2238
2 1VQO 20 R 50S ribosomal protein L22P 2238
3 1VQ8 20 R 50S ribosomal protein L22P 2238
4 1S72 20 R 50S ribosomal protein L22P 2238
5 1JJ2 19 Q RIBOSOMAL PROTEIN L22 2238
6 1YHQ 20 R 50S ribosomal protein L22P 2238
7 1VQP 20 R 50S ribosomal protein L22P 2238
8 1VQM 20 R 50S ribosomal protein L22P 2238
9 3CC2 18 R 50S ribosomal protein L22P 2238
10 1VQL 20 R 50S ribosomal protein L22P 2238
11 1VQK 20 R 50S ribosomal protein L22P 2238
12 1VQN 21 R 50S ribosomal protein L22P 2238
13 1YIJ 20 R 50S ribosomal protein L22P 2238
14 1YI2 20 R 50S ribosomal protein L22P 2238
15 1VQ9 20 R 50S ribosomal protein L22P 2238
16 1VQ7 20 R 50S ribosomal protein L22P 2238
17 3CCM 18 R 50S ribosomal protein L22P 2238
18 1VQ5 20 R 50S ribosomal protein L22P 2238
19 3CC7 18 R 50S ribosomal protein L22P 2238
20 1YIT 24 R 50S RIBOSOMAL PROTEIN L22P 2238
21 3CCE 18 R 50S ribosomal protein L22P 2238
22 3G6E 19 R 50S ribosomal protein L22P 2238
23 3CPW 19 Q 50S ribosomal protein L22P 2238
24 3CCU 18 R 50S ribosomal protein L22P 2238
25 1VQ6 21 R 50S ribosomal protein L22P 2238
26 1M90 20 S RIBOSOMAL PROTEIN L22 2238
27 3CCL 18 R 50S ribosomal protein L22P 2238
28 1YJW 24 R 50S RIBOSOMAL PROTEIN L22P 2238
29 1YJ9 20 R 50S ribosomal protein L22P Q122, Q123, G124 deletion 2238
30 3CD6 18 R 50S ribosomal protein L22P 2238
31 3CCV 18 R 50S ribosomal protein L22P 2238
32 3CC4 18 R 50S ribosomal protein L22P 2238
33 2OTL 19 R 50S ribosomal protein L22P 2238
34 3G71 19 R 50S ribosomal protein L22P 2238
35 1FFK 17 O RIBOSOMAL PROTEIN L22 2238
36 1VQ4 20 R 50S ribosomal protein L22P 2238
37 1YJN 20 R 50S ribosomal protein L22P 2238
38 3CMA 18 R 50S ribosomal protein L22P 2238
39 3CCS 18 R 50S ribosomal protein L22P 2238
40 3CCQ 18 R 50S ribosomal protein L22P 2238
41 3I56 18 R 50S ribosomal protein L22P 2238
42 3CCR 18 R 50S ribosomal protein L22P 2238
43 2OTJ 19 R 50S ribosomal protein L22P 2238
44 1KQS 21 Q RIBOSOMAL PROTEIN L22 2238
45 3OW2 19 Q 50S ribosomal protein L22P 2238
46 3CXC 20 Q RIBOSOMAL PROTEIN L22 2238
47 1QVG 20 Q 50S ribosomal protein L22P 2238
48 3CME 18 R 50S ribosomal protein L22P 2238
49 2QEX 19 R 50S ribosomal protein L22P 2238
50 1KC8 19 S RIBOSOMAL PROTEIN L22 2238
51 1N8R 19 S 50S ribosomal protein L22P 2238
52 1Q81 20 S 50S ribosomal protein L22P 2238
53 1Q82 20 S 50S ribosomal protein L22P 2238
54 1QVF 20 Q 50S ribosomal protein L22P 2238
55 1NJI 19 S 50S ribosomal protein L22P 2238
56 1K73 19 S RIBOSOMAL PROTEIN L22 2238
57 1K9M 19 S RIBOSOMAL PROTEIN L22 2238
58 1KD1 19 S RIBOSOMAL PROTEIN L22 2238
59 3I55 19 R 50S ribosomal protein L22P 2238
60 1K8A 19 S RIBOSOMAL PROTEIN L22 2238
61 1Q86 20 S 50S ribosomal protein L22P 2238
62 1M1K 19 S RIBOSOMAL PROTEIN L22 2238
63 3G4S 19 R 50S ribosomal protein L22P 2238
64 3CCJ 18 R 50S ribosomal protein L22P 2238
65 1W2B 22 Q 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 2238
66 2QA4 20 R 50S ribosomal protein L22P 2238
67 1Q7Y 20 S 50S ribosomal protein L22P 2238
68 4ADX 28 R RPL22 145262