Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 757
95 % 36 68 540
90 % 36 68 568
70 % 36 68 617
50 % 36 145 222
40 % 36 145 248
30 % 44 444 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55536
95 % 1 1 38764
90 % 1 1 36937
70 % 36 68 611
50 % 36 140 233
40 % 36 140 260
30 % 36 140 272
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 475
90 % 36 74 504
70 % 36 74 547
50 % 36 74 631
40 % 36 74 677
30 % 43 433 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 473
90 % 36 74 502
70 % 36 74 544
50 % 36 76 610
40 % 36 76 653
30 % 36 78 639
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 364
95 % 36 68 541
90 % 36 68 570
70 % 36 68 619
50 % 36 70 681
40 % 36 70 726
30 % 36 70 732
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1991
95 % 36 68 539
90 % 36 68 567
70 % 36 68 616
50 % 36 68 707
40 % 36 70 723
30 % 36 71 713
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 543
90 % 36 68 573
70 % 36 68 622
50 % 36 70 683
40 % 36 70 728
30 % 36 71 716
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 374
95 % 36 68 537
90 % 36 68 565
70 % 36 68 614
50 % 36 68 705
40 % 36 68 745
30 % 36 144 259
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 480
90 % 36 74 510
70 % 36 74 554
50 % 36 76 613
40 % 36 78 631
30 % 43 371 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 478
90 % 36 74 508
70 % 36 74 552
50 % 36 149 219
40 % 36 149 242
30 % 36 149 253
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 348
95 % 34 70 518
90 % 34 70 545
70 % 34 70 592
50 % 34 70 684
40 % 34 70 729
30 % 34 70 733
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 481
90 % 36 74 511
70 % 36 74 555
50 % 36 74 637
40 % 36 74 682
30 % 36 74 682
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 538
90 % 36 68 566
70 % 36 68 615
50 % 36 68 706
40 % 36 70 721
30 % 36 71 712
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 368
95 % 36 68 545
90 % 36 68 575
70 % 36 68 624
50 % 36 68 710
40 % 36 68 749
30 % 36 68 754
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58749
95 % 3 5 13117
90 % 3 5 12880
70 % 3 5 12117
50 % 3 5 10840
40 % 3 5 9867
30 % 3 5 8579
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64836
95 % 1 1 44989
90 % 1 1 42850
70 % 3 21 2636
50 % 7 30 1772
40 % 7 98 369
30 % 26 121 320
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 546
90 % 36 68 576
70 % 36 68 625
50 % 36 69 696
40 % 36 69 739
30 % 36 69 746
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66192
95 % 36 68 547
90 % 36 68 577
70 % 36 68 626
50 % 36 142 228
40 % 36 142 257
30 % 36 142 266
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 367
95 % 36 68 544
90 % 36 68 574
70 % 36 68 623
50 % 36 68 709
40 % 36 68 748
30 % 36 139 275
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 361
95 % 36 68 536
90 % 36 68 564
70 % 36 68 613
50 % 36 68 704
40 % 36 144 250
30 % 44 439 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1968
95 % 36 68 534
90 % 36 68 562
70 % 36 68 610
50 % 36 140 232
40 % 36 142 256
30 % 36 142 264
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49105
95 % 36 74 466
90 % 36 74 496
70 % 36 74 540
50 % 36 74 624
40 % 36 149 237
30 % 36 149 248
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9175
95 % 36 74 469
90 % 36 74 499
70 % 36 74 543
50 % 36 74 627
40 % 36 76 652
30 % 36 77 647
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 474
90 % 36 74 503
70 % 36 74 545
50 % 36 74 629
40 % 37 150 236
30 % 37 150 247
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2000
95 % 3 21 2587
90 % 36 68 569
70 % 36 68 618
50 % 51 98 344
40 % 58 112 314
30 % 58 114 325
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57705
95 % 1 1 39976
90 % 1 7 9334
70 % 3 27 1944
50 % 36 74 630
40 % 36 79 619
30 % 36 79 629
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 476
90 % 36 74 506
70 % 36 74 550
50 % 36 74 634
40 % 37 77 643
30 % 37 78 642

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 20 R 50S ribosomal protein L22P 2238
2 1VQO 20 R 50S ribosomal protein L22P 2238
3 1VQ8 20 R 50S ribosomal protein L22P 2238
4 1S72 20 R 50S ribosomal protein L22P 2238
5 1JJ2 19 Q RIBOSOMAL PROTEIN L22 2238
6 1YHQ 20 R 50S ribosomal protein L22P 2238
7 1VQP 20 R 50S ribosomal protein L22P 2238
8 1VQM 20 R 50S ribosomal protein L22P 2238
9 3CC2 18 R 50S ribosomal protein L22P 2238
10 1VQL 20 R 50S ribosomal protein L22P 2238
11 1VQK 20 R 50S ribosomal protein L22P 2238
12 1VQN 21 R 50S ribosomal protein L22P 2238
13 1YIJ 20 R 50S ribosomal protein L22P 2238
14 1YI2 20 R 50S ribosomal protein L22P 2238
15 1VQ9 20 R 50S ribosomal protein L22P 2238
16 1VQ7 20 R 50S ribosomal protein L22P 2238
17 3CCM 18 R 50S ribosomal protein L22P 2238
18 1VQ5 20 R 50S ribosomal protein L22P 2238
19 3CCJ 18 R 50S ribosomal protein L22P 2238
20 3CC7 18 R 50S ribosomal protein L22P 2238
21 1YIT 24 R 50S RIBOSOMAL PROTEIN L22P 2238
22 3CCE 18 R 50S ribosomal protein L22P 2238
23 3G6E 19 R 50S ribosomal protein L22P 2238
24 3CPW 19 Q 50S ribosomal protein L22P 2238
25 3CCU 18 R 50S ribosomal protein L22P 2238
26 1VQ6 21 R 50S ribosomal protein L22P 2238
27 1M90 20 S RIBOSOMAL PROTEIN L22 2238
28 3CCL 18 R 50S ribosomal protein L22P 2238
29 1YJW 24 R 50S RIBOSOMAL PROTEIN L22P 2238
30 1YJ9 20 R 50S ribosomal protein L22P Q122, Q123, G124 deletion 2238
31 3CD6 18 R 50S ribosomal protein L22P 2238
32 3CCV 18 R 50S ribosomal protein L22P 2238
33 3CC4 18 R 50S ribosomal protein L22P 2238
34 2OTL 19 R 50S ribosomal protein L22P 2238
35 3G71 19 R 50S ribosomal protein L22P 2238
36 1FFK 17 O RIBOSOMAL PROTEIN L22 2238
37 1VQ4 20 R 50S ribosomal protein L22P 2238
38 1YJN 20 R 50S ribosomal protein L22P 2238
39 3CMA 18 R 50S ribosomal protein L22P 2238
40 3CCS 18 R 50S ribosomal protein L22P 2238
41 3CCQ 18 R 50S ribosomal protein L22P 2238
42 3I56 18 R 50S ribosomal protein L22P 2238
43 3CCR 18 R 50S ribosomal protein L22P 2238
44 2OTJ 19 R 50S ribosomal protein L22P 2238
45 4V88 53 BP, DP 60S ribosomal protein L17-A 4932
46 1KQS 21 Q RIBOSOMAL PROTEIN L22 2238
47 3OW2 19 Q 50S ribosomal protein L22P 2238
48 4U4R 53 M7, m7 60S ribosomal protein L17-A 4932
49 3CXC 20 Q RIBOSOMAL PROTEIN L22 2238
50 1QVG 20 Q 50S ribosomal protein L22P 2238
51 3CME 18 R 50S ribosomal protein L22P 2238
52 2QEX 19 R 50S ribosomal protein L22P 2238
53 4U3U 53 M7, m7 60S ribosomal protein L17-A 4932
54 1KC8 19 S RIBOSOMAL PROTEIN L22 2238
55 4U3M 53 M7, m7 60S ribosomal protein L17-A 4932
56 1N8R 19 S 50S ribosomal protein L22P 2238
57 4U3N 53 M7, m7 60S ribosomal protein L17-A 4932
58 1Q81 20 S 50S ribosomal protein L22P 2238
59 1Q82 20 S 50S ribosomal protein L22P 2238
60 1QVF 20 Q 50S ribosomal protein L22P 2238
61 4U52 53 M7, m7 60S ribosomal protein L17-A 4932
62 4U4Q 53 M7, m7 60S ribosomal protein L17-A 4932
63 1NJI 19 S 50S ribosomal protein L22P 2238
64 4U6F 53 M7, m7 60S ribosomal protein L17-A 4932
65 4U4U 53 M7, m7 60S ribosomal protein L17-A 4932
66 1K73 19 S RIBOSOMAL PROTEIN L22 2238
67 4U4Z 53 M7, m7 60S ribosomal protein L17-A 4932
68 4U4Y 53 M7, m7 60S ribosomal protein L17-A 4932
69 4U4N 53 M7, m7 60S ribosomal protein L17-A 4932
70 4U55 53 M7, m7 60S ribosomal protein L17-A 4932
71 1K9M 19 S RIBOSOMAL PROTEIN L22 2238
72 1KD1 19 S RIBOSOMAL PROTEIN L22 2238
73 3I55 19 R 50S ribosomal protein L22P 2238
74 5I4L 53 M7, m7 60S ribosomal protein L17-A 4932
75 4U51 53 M7, m7 60S ribosomal protein L17-A 4932
76 1K8A 19 S RIBOSOMAL PROTEIN L22 2238
77 4U53 53 M7, m7 60S ribosomal protein L17-A 4932
78 1Q86 20 S 50S ribosomal protein L22P 2238
79 4U50 53 M7, m7 60S ribosomal protein L17-A 4932
80 1M1K 19 S RIBOSOMAL PROTEIN L22 2238
81 3G4S 19 R 50S ribosomal protein L22P 2238
82 1W2B 22 Q 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 2238
83 4U56 53 M7, m7 60S ribosomal protein L17-A 4932
84 2QA4 20 R 50S ribosomal protein L22P 2238
85 1Q7Y 20 S 50S ribosomal protein L22P 2238
86 5FCJ 53 M7, m7 60S ribosomal protein L17-A 4932
87 4U4O 53 M7, m7 60S ribosomal protein L17-A 4932
88 4V8P 38 BQ, CQ, EQ, GQ RPL17 5911
89 5FCI 53 M7, m7 60S ribosomal protein L17-A 4932
90 5DC3 53 M7, m7 60S ribosomal protein L17-A 4932
91 4V7R 46 BQ, DQ 60S ribosomal protein L17-A 4932
92 5IT7 18 PP KLLA0A06336p 28985
93 3JCT 16 P 60S ribosomal protein L17-A 4932
94 3JCS 28 T ribosomal protein L22 5661
95 5GAK 41 R 60S ribosomal protein L17-A 4932
96 5FL8 16 P 60S ribosomal protein L17-A 4932
97 5APN 18 P 60S ribosomal protein L17-A 4932
98 5APO 18 P 60S ribosomal protein L17-A 4932
99 3JBN 63 AW 60S ribosomal protein uL22 5833
100 3JBO 63 AW 60S ribosomal protein uL22 5833
101 3JBP 63 AW 60S ribosomal protein uL22 5833
102 5A8L 3 D 60S RIBOSOMAL PROTEIN L17 9606
103 3JAN 40 P Ribosomal protein uL22 SEE REMARK 999 9986
104 3JAJ 40 P Ribosomal protein uL22 SEE REMARK 999 9986
105 3JAG 15 P uL22 9986
106 3JAH 15 P uL22 9986
107 3JAI 15 P uL22 9986
108 4UG0 18 LP 60S RIBOSOMAL PROTEIN L17 9606
109 5AJ0 18 AP 60S ribosomal protein L17 9606
110 3J92 15 P uL22 9986
111 4D67 15 P 60S RIBOSOMAL PROTEIN L17 9986
112 4D5Y 15 P 60S RIBOSOMAL PROTEIN UL22 9986
113 4V3P 48 LV 60S ribosomal protein L17 4565
114 3J7O 18 P Ribosomal protein uL22 9823
115 3J7P 19 P Ribosomal protein uL22 9823
116 3J7Q 18 P Ribosomal protein uL22 9823
117 3J7R 18 P Ribosomal protein uL22 9823
118 4UJC 21 BP 60S RIBOSOMAL PROTEIN L17 9986
119 4UJD 18 AP 60S RIBOSOMAL PROTEIN L17 9986
120 3J79 23 W 60S ribosomal protein uL22 5833
121 3J77 17 67 60S ribosomal protein L17 4932
122 3J78 17 67 60S ribosomal protein L17 4932
123 3J6X 19 57 60S ribosomal protein L17 4932
124 3J6Y 19 57 60S ribosomal protein L17 4932
125 4UJE 52 CP 60S RIBOSOMAL PROTEIN L17 9986
126 4V91 18 P UL22 RIBOSOMAL PROTEIN UL2 28985
127 4V7F 24 U 60S ribosomal protein L17 4932
128 4V7E 50 CP 60S ribosomal protein L22 4565
129 4V8Y 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
130 4V8Z 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
131 4V4N 5 AS 50S ribosomal protein L22P SEE REMARK 999 2190
132 4V6W 54 CP 60S ribosomal protein L17 7227
133 4V6X 54 CP 60S ribosomal protein L17 9606
134 4V8M 51 BR 60S RIBOSOMAL PROTEIN L17, PUTATIVE 185431
135 4V6U 60 BS 50S ribosomal protein L22P 2261
136 4V8T 16 P 60S RIBOSOMAL PROTEIN L17-A 4932
137 4ADX 28 R RPL22 145262
138 4V6I 49 BV 60S ribosomal protein rpL17 (L22p) 4932
139 2WW9 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
140 2WWA 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
141 2WWB 9 I 60S RIBOSOMAL PROTEIN L17-A 4565
142 4V7H 38 BN 60S ribosomal protein L17(A) 5541
143 4V5Z 71 Br 60S Ribosomal protein L17 9612
144 4V4B 33 BN 60S ribosomal protein L17-A 4932