Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 734
95 % 36 68 522
90 % 36 68 551
70 % 36 68 605
50 % 36 138 231
40 % 36 138 258
30 % 43 417 38
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53956
95 % 1 1 37687
90 % 1 1 35923
70 % 36 68 599
50 % 36 133 243
40 % 36 133 269
30 % 36 133 283
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 310
95 % 36 74 457
90 % 36 74 483
70 % 36 74 526
50 % 36 74 603
40 % 36 74 652
30 % 42 406 43
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 455
90 % 36 74 481
70 % 36 74 523
50 % 36 76 579
40 % 36 76 624
30 % 36 78 599
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 354
95 % 36 68 525
90 % 36 68 555
70 % 36 68 608
50 % 36 70 662
40 % 36 70 706
30 % 36 70 707
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1903
95 % 36 68 521
90 % 36 68 550
70 % 36 68 604
50 % 36 68 696
40 % 36 70 703
30 % 36 71 687
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 355
95 % 36 68 526
90 % 36 68 556
70 % 36 68 609
50 % 36 70 664
40 % 36 70 708
30 % 36 71 690
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 364
95 % 36 68 519
90 % 36 68 548
70 % 36 68 602
50 % 36 68 693
40 % 36 68 725
30 % 36 137 271
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 315
95 % 36 74 462
90 % 36 74 488
70 % 36 74 533
50 % 36 76 581
40 % 36 78 597
30 % 42 351 54
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 313
95 % 36 74 460
90 % 36 74 486
70 % 36 74 531
50 % 36 142 222
40 % 36 142 253
30 % 36 142 264
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 340
95 % 34 70 503
90 % 34 70 529
70 % 34 70 580
50 % 34 70 665
40 % 34 70 709
30 % 34 70 709
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 316
95 % 36 74 463
90 % 36 74 489
70 % 36 74 534
50 % 36 74 610
40 % 36 74 659
30 % 36 74 650
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 351
95 % 36 68 520
90 % 36 68 549
70 % 36 68 603
50 % 36 68 694
40 % 36 70 702
30 % 36 71 686
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 357
95 % 36 68 528
90 % 36 68 558
70 % 36 68 611
50 % 36 68 699
40 % 36 68 728
30 % 36 68 729
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57082
95 % 3 5 12676
90 % 3 5 12439
70 % 3 5 11713
50 % 3 5 10502
40 % 3 5 9582
30 % 3 5 8353
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63043
95 % 1 1 43760
90 % 1 1 41723
70 % 3 21 2551
50 % 7 30 1716
40 % 7 91 390
30 % 26 114 330
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 359
95 % 36 68 530
90 % 36 68 560
70 % 36 68 613
50 % 36 69 682
40 % 36 69 720
30 % 36 69 723
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64384
95 % 36 68 532
90 % 36 68 561
70 % 36 68 614
50 % 36 135 236
40 % 36 135 263
30 % 36 135 276
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 356
95 % 36 68 527
90 % 36 68 557
70 % 36 68 610
50 % 36 68 698
40 % 36 68 727
30 % 36 133 284
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 518
90 % 36 68 547
70 % 36 68 601
50 % 36 68 692
40 % 36 137 259
30 % 43 412 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1881
95 % 36 68 516
90 % 36 68 545
70 % 36 68 598
50 % 36 133 242
40 % 36 135 262
30 % 36 135 274
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47698
95 % 36 74 448
90 % 36 74 475
70 % 36 74 519
50 % 36 74 596
40 % 36 142 250
30 % 36 142 261
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8845
95 % 36 74 451
90 % 36 74 478
70 % 36 74 522
50 % 36 74 598
40 % 36 76 622
30 % 36 77 610
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 456
90 % 36 74 482
70 % 36 74 524
50 % 36 74 601
40 % 37 142 252
30 % 37 142 263
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1915
95 % 3 21 2493
90 % 36 68 554
70 % 36 68 607
50 % 51 95 347
40 % 58 109 309
30 % 58 111 320
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56064
95 % 1 1 38858
90 % 1 7 9001
70 % 3 27 1871
50 % 36 74 602
40 % 36 79 583
30 % 36 79 589
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 311
95 % 36 74 458
90 % 36 74 484
70 % 36 74 529
50 % 36 74 607
40 % 37 77 609
30 % 37 78 603

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 20 R 50S ribosomal protein L22P 2238
2 1VQO 20 R 50S ribosomal protein L22P 2238
3 1VQ8 20 R 50S ribosomal protein L22P 2238
4 1S72 20 R 50S ribosomal protein L22P 2238
5 1JJ2 19 Q RIBOSOMAL PROTEIN L22 2238
6 1YHQ 20 R 50S ribosomal protein L22P 2238
7 1VQP 20 R 50S ribosomal protein L22P 2238
8 1VQM 20 R 50S ribosomal protein L22P 2238
9 3CC2 18 R 50S ribosomal protein L22P 2238
10 1VQL 20 R 50S ribosomal protein L22P 2238
11 1VQK 20 R 50S ribosomal protein L22P 2238
12 1VQN 21 R 50S ribosomal protein L22P 2238
13 1YIJ 20 R 50S ribosomal protein L22P 2238
14 1YI2 20 R 50S ribosomal protein L22P 2238
15 1VQ9 20 R 50S ribosomal protein L22P 2238
16 1VQ7 20 R 50S ribosomal protein L22P 2238
17 3CCM 18 R 50S ribosomal protein L22P 2238
18 1VQ5 20 R 50S ribosomal protein L22P 2238
19 3CCJ 18 R 50S ribosomal protein L22P 2238
20 3CC7 18 R 50S ribosomal protein L22P 2238
21 1YIT 24 R 50S RIBOSOMAL PROTEIN L22P 2238
22 3CCE 18 R 50S ribosomal protein L22P 2238
23 3G6E 19 R 50S ribosomal protein L22P 2238
24 3CPW 19 Q 50S ribosomal protein L22P 2238
25 3CCU 18 R 50S ribosomal protein L22P 2238
26 1VQ6 21 R 50S ribosomal protein L22P 2238
27 1M90 20 S RIBOSOMAL PROTEIN L22 2238
28 3CCL 18 R 50S ribosomal protein L22P 2238
29 1YJW 24 R 50S RIBOSOMAL PROTEIN L22P 2238
30 1YJ9 20 R 50S ribosomal protein L22P Q122, Q123, G124 deletion 2238
31 3CD6 18 R 50S ribosomal protein L22P 2238
32 3CCV 18 R 50S ribosomal protein L22P 2238
33 3CC4 18 R 50S ribosomal protein L22P 2238
34 2OTL 19 R 50S ribosomal protein L22P 2238
35 3G71 19 R 50S ribosomal protein L22P 2238
36 1FFK 17 O RIBOSOMAL PROTEIN L22 2238
37 1VQ4 20 R 50S ribosomal protein L22P 2238
38 1YJN 20 R 50S ribosomal protein L22P 2238
39 3CMA 18 R 50S ribosomal protein L22P 2238
40 3CCS 18 R 50S ribosomal protein L22P 2238
41 3CCQ 18 R 50S ribosomal protein L22P 2238
42 3I56 18 R 50S ribosomal protein L22P 2238
43 3CCR 18 R 50S ribosomal protein L22P 2238
44 2OTJ 19 R 50S ribosomal protein L22P 2238
45 4V88 53 BP, DP 60S ribosomal protein L17-A 4932
46 1KQS 21 Q RIBOSOMAL PROTEIN L22 2238
47 3OW2 19 Q 50S ribosomal protein L22P 2238
48 4U4R 53 M7, m7 60S ribosomal protein L17-A 4932
49 3CXC 20 Q RIBOSOMAL PROTEIN L22 2238
50 1QVG 20 Q 50S ribosomal protein L22P 2238
51 3CME 18 R 50S ribosomal protein L22P 2238
52 2QEX 19 R 50S ribosomal protein L22P 2238
53 4U3U 53 M7, m7 60S ribosomal protein L17-A 4932
54 1KC8 19 S RIBOSOMAL PROTEIN L22 2238
55 4U3M 53 M7, m7 60S ribosomal protein L17-A 4932
56 1N8R 19 S 50S ribosomal protein L22P 2238
57 4U3N 53 M7, m7 60S ribosomal protein L17-A 4932
58 1Q81 20 S 50S ribosomal protein L22P 2238
59 1Q82 20 S 50S ribosomal protein L22P 2238
60 1QVF 20 Q 50S ribosomal protein L22P 2238
61 4U52 53 M7, m7 60S ribosomal protein L17-A 4932
62 4U4Q 53 M7, m7 60S ribosomal protein L17-A 4932
63 1NJI 19 S 50S ribosomal protein L22P 2238
64 4U6F 53 M7, m7 60S ribosomal protein L17-A 4932
65 4U4U 53 M7, m7 60S ribosomal protein L17-A 4932
66 1K73 19 S RIBOSOMAL PROTEIN L22 2238
67 4U4Z 53 M7, m7 60S ribosomal protein L17-A 4932
68 4U4Y 53 M7, m7 60S ribosomal protein L17-A 4932
69 4U4N 53 M7, m7 60S ribosomal protein L17-A 4932
70 4U55 53 M7, m7 60S ribosomal protein L17-A 4932
71 1K9M 19 S RIBOSOMAL PROTEIN L22 2238
72 1KD1 19 S RIBOSOMAL PROTEIN L22 2238
73 3I55 19 R 50S ribosomal protein L22P 2238
74 4U51 53 M7, m7 60S ribosomal protein L17-A 4932
75 1K8A 19 S RIBOSOMAL PROTEIN L22 2238
76 4U53 53 M7, m7 60S ribosomal protein L17-A 4932
77 1Q86 20 S 50S ribosomal protein L22P 2238
78 4U50 53 M7, m7 60S ribosomal protein L17-A 4932
79 1M1K 19 S RIBOSOMAL PROTEIN L22 2238
80 3G4S 19 R 50S ribosomal protein L22P 2238
81 1W2B 22 Q 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 2238
82 4U56 53 M7, m7 60S ribosomal protein L17-A 4932
83 2QA4 20 R 50S ribosomal protein L22P 2238
84 1Q7Y 20 S 50S ribosomal protein L22P 2238
85 4U4O 53 M7, m7 60S ribosomal protein L17-A 4932
86 4V8P 38 BQ, CQ, EQ, GQ RPL17 5911
87 4V7R 46 BQ, DQ 60S ribosomal protein L17-A 4932
88 5GAK 41 R 60S ribosomal protein L17-A 4932
89 5FL8 16 P 60S ribosomal protein L17-A 4932
90 5APN 18 P 60S ribosomal protein L17-A 4932
91 5APO 18 P 60S ribosomal protein L17-A 4932
92 3JBN 63 AW 60S ribosomal protein uL22 5833
93 3JBO 63 AW 60S ribosomal protein uL22 5833
94 3JBP 63 AW 60S ribosomal protein uL22 5833
95 5A8L 3 D 60S RIBOSOMAL PROTEIN L17 9606
96 3JAN 40 P Ribosomal protein uL22 SEE REMARK 999 9986
97 3JAJ 40 P Ribosomal protein uL22 SEE REMARK 999 9986
98 3JAG 15 P uL22 9986
99 3JAH 15 P uL22 9986
100 3JAI 15 P uL22 9986
101 4UG0 18 LP 60S RIBOSOMAL PROTEIN L17 9606
102 5AJ0 18 AP 60S ribosomal protein L17 9606
103 3J92 15 P uL22 9986
104 4D67 15 P 60S RIBOSOMAL PROTEIN L17 9986
105 4D5Y 15 P 60S RIBOSOMAL PROTEIN UL22 9986
106 4V3P 48 LV 60S ribosomal protein L17 4565
107 3J7O 18 P Ribosomal protein uL22 9823
108 3J7P 19 P Ribosomal protein uL22 9823
109 3J7Q 18 P Ribosomal protein uL22 9823
110 3J7R 18 P Ribosomal protein uL22 9823
111 4UJC 21 BP 60S RIBOSOMAL PROTEIN L17 9986
112 4UJD 18 AP 60S RIBOSOMAL PROTEIN L17 9986
113 3J79 23 W 60S ribosomal protein uL22 5833
114 3J77 17 67 60S ribosomal protein L17 4932
115 3J78 17 67 60S ribosomal protein L17 4932
116 3J6X 19 57 60S ribosomal protein L17 4932
117 3J6Y 19 57 60S ribosomal protein L17 4932
118 4UJE 52 CP 60S RIBOSOMAL PROTEIN L17 9986
119 4V91 18 P UL22 RIBOSOMAL PROTEIN UL2 28985
120 4V7F 24 U 60S ribosomal protein L17 4932
121 4V7E 50 CP 60S ribosomal protein L22 4565
122 4V8Y 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
123 4V8Z 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
124 4V4N 5 AS 50S ribosomal protein L22P SEE REMARK 999 2190
125 4V6W 54 CP 60S ribosomal protein L17 7227
126 4V6X 54 CP 60S ribosomal protein L17 9606
127 4V8M 51 BR 60S RIBOSOMAL PROTEIN L17, PUTATIVE 185431
128 4V6U 60 BS 50S ribosomal protein L22P 2261
129 4V8T 16 P 60S RIBOSOMAL PROTEIN L17-A 4932
130 4ADX 28 R RPL22 145262
131 4V6I 49 BV 60S ribosomal protein rpL17 (L22p) 4932
132 2WW9 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
133 2WWA 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
134 2WWB 9 I 60S RIBOSOMAL PROTEIN L17-A 4565
135 4V7H 38 BN 60S ribosomal protein L17(A) 5541
136 4V5Z 71 Br 60S Ribosomal protein L17 9612
137 4V4B 33 BN 60S ribosomal protein L17-A 4932