Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 718
95 % 36 68 509
90 % 36 68 538
70 % 36 68 590
50 % 36 137 223
40 % 36 137 250
30 % 42 407 36
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52914
95 % 1 1 36980
90 % 1 1 35249
70 % 36 68 582
50 % 36 132 237
40 % 36 132 263
30 % 36 132 278
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 302
95 % 36 74 443
90 % 36 74 466
70 % 36 74 509
50 % 36 74 589
40 % 36 74 633
30 % 41 396 45
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 300
95 % 36 74 440
90 % 36 74 464
70 % 36 74 506
50 % 36 76 565
40 % 36 76 609
30 % 36 78 582
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 347
95 % 36 68 511
90 % 36 68 541
70 % 36 68 593
50 % 36 70 648
40 % 36 70 688
30 % 36 70 690
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1849
95 % 36 68 507
90 % 36 68 536
70 % 36 68 588
50 % 36 68 684
40 % 36 70 685
30 % 36 71 671
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 348
95 % 36 68 512
90 % 36 68 542
70 % 36 68 594
50 % 36 70 649
40 % 36 70 690
30 % 36 71 674
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 357
95 % 36 68 505
90 % 36 68 534
70 % 36 68 586
50 % 36 68 681
40 % 36 68 714
30 % 36 136 267
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 308
95 % 36 74 448
90 % 36 74 471
70 % 36 74 517
50 % 36 76 569
40 % 36 78 585
30 % 41 342 53
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 305
95 % 36 74 446
90 % 36 74 469
70 % 36 74 514
50 % 36 141 219
40 % 36 141 248
30 % 36 141 260
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 332
95 % 34 70 487
90 % 34 70 514
70 % 34 70 563
50 % 34 70 651
40 % 34 70 691
30 % 34 70 691
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 309
95 % 36 74 449
90 % 36 74 472
70 % 36 74 518
50 % 36 74 596
40 % 36 74 640
30 % 36 74 637
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 345
95 % 36 68 506
90 % 36 68 535
70 % 36 68 587
50 % 36 68 682
40 % 36 70 684
30 % 36 71 670
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 350
95 % 36 68 514
90 % 36 68 544
70 % 36 68 596
50 % 36 68 688
40 % 36 68 718
30 % 36 68 719
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56014
95 % 3 5 12417
90 % 3 5 12182
70 % 3 5 11486
50 % 3 5 10299
40 % 3 5 9392
30 % 3 5 8193
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61910
95 % 1 1 42993
90 % 1 1 40997
70 % 3 21 2500
50 % 7 30 1688
40 % 7 90 384
30 % 26 113 325
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 352
95 % 36 68 516
90 % 36 68 546
70 % 36 68 598
50 % 36 69 670
40 % 36 69 705
30 % 36 69 706
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63238
95 % 36 68 517
90 % 36 68 547
70 % 36 68 599
50 % 36 134 231
40 % 36 134 258
30 % 36 134 274
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 349
95 % 36 68 513
90 % 36 68 543
70 % 36 68 595
50 % 36 68 687
40 % 36 68 717
30 % 36 132 281
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 344
95 % 36 68 504
90 % 36 68 533
70 % 36 68 585
50 % 36 68 680
40 % 36 136 253
30 % 42 402 42
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1826
95 % 36 68 501
90 % 36 68 530
70 % 36 68 581
50 % 36 132 236
40 % 36 134 256
30 % 36 134 271
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46752
95 % 36 74 432
90 % 36 74 457
70 % 36 74 502
50 % 36 74 580
40 % 36 141 244
30 % 36 141 257
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 8658
95 % 36 74 436
90 % 36 74 461
70 % 36 74 505
50 % 36 74 583
40 % 36 76 607
30 % 36 77 593
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 301
95 % 36 74 442
90 % 36 74 465
70 % 36 74 507
50 % 36 74 587
40 % 37 141 247
30 % 37 141 259
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1862
95 % 3 21 2441
90 % 36 68 540
70 % 36 68 592
50 % 51 95 340
40 % 58 107 308
30 % 58 109 317
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55005
95 % 1 1 38142
90 % 1 7 8820
70 % 3 27 1836
50 % 36 74 588
40 % 36 79 571
30 % 36 79 574
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 303
95 % 36 74 444
90 % 36 74 467
70 % 36 74 512
50 % 36 74 592
40 % 37 77 597
30 % 37 78 586

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 20 R 50S ribosomal protein L22P 2238
2 1VQO 20 R 50S ribosomal protein L22P 2238
3 1VQ8 20 R 50S ribosomal protein L22P 2238
4 1S72 20 R 50S ribosomal protein L22P 2238
5 1JJ2 19 Q RIBOSOMAL PROTEIN L22 2238
6 1YHQ 20 R 50S ribosomal protein L22P 2238
7 1VQP 20 R 50S ribosomal protein L22P 2238
8 1VQM 20 R 50S ribosomal protein L22P 2238
9 3CC2 18 R 50S ribosomal protein L22P 2238
10 1VQL 20 R 50S ribosomal protein L22P 2238
11 1VQK 20 R 50S ribosomal protein L22P 2238
12 1VQN 21 R 50S ribosomal protein L22P 2238
13 1YIJ 20 R 50S ribosomal protein L22P 2238
14 1YI2 20 R 50S ribosomal protein L22P 2238
15 1VQ9 20 R 50S ribosomal protein L22P 2238
16 1VQ7 20 R 50S ribosomal protein L22P 2238
17 3CCM 18 R 50S ribosomal protein L22P 2238
18 1VQ5 20 R 50S ribosomal protein L22P 2238
19 3CCJ 18 R 50S ribosomal protein L22P 2238
20 3CC7 18 R 50S ribosomal protein L22P 2238
21 1YIT 24 R 50S RIBOSOMAL PROTEIN L22P 2238
22 3CCE 18 R 50S ribosomal protein L22P 2238
23 3G6E 19 R 50S ribosomal protein L22P 2238
24 3CPW 19 Q 50S ribosomal protein L22P 2238
25 3CCU 18 R 50S ribosomal protein L22P 2238
26 1VQ6 21 R 50S ribosomal protein L22P 2238
27 1M90 20 S RIBOSOMAL PROTEIN L22 2238
28 3CCL 18 R 50S ribosomal protein L22P 2238
29 1YJW 24 R 50S RIBOSOMAL PROTEIN L22P 2238
30 1YJ9 20 R 50S ribosomal protein L22P Q122, Q123, G124 deletion 2238
31 3CD6 18 R 50S ribosomal protein L22P 2238
32 3CCV 18 R 50S ribosomal protein L22P 2238
33 3CC4 18 R 50S ribosomal protein L22P 2238
34 2OTL 19 R 50S ribosomal protein L22P 2238
35 3G71 19 R 50S ribosomal protein L22P 2238
36 1FFK 17 O RIBOSOMAL PROTEIN L22 2238
37 1VQ4 20 R 50S ribosomal protein L22P 2238
38 1YJN 20 R 50S ribosomal protein L22P 2238
39 3CMA 18 R 50S ribosomal protein L22P 2238
40 3CCS 18 R 50S ribosomal protein L22P 2238
41 3CCQ 18 R 50S ribosomal protein L22P 2238
42 3I56 18 R 50S ribosomal protein L22P 2238
43 3CCR 18 R 50S ribosomal protein L22P 2238
44 2OTJ 19 R 50S ribosomal protein L22P 2238
45 4V88 53 BP, DP 60S ribosomal protein L17-A 4932
46 1KQS 21 Q RIBOSOMAL PROTEIN L22 2238
47 3OW2 19 Q 50S ribosomal protein L22P 2238
48 4U4R 53 M7, m7 60S ribosomal protein L17-A 4932
49 3CXC 20 Q RIBOSOMAL PROTEIN L22 2238
50 1QVG 20 Q 50S ribosomal protein L22P 2238
51 3CME 18 R 50S ribosomal protein L22P 2238
52 2QEX 19 R 50S ribosomal protein L22P 2238
53 4U3U 53 M7, m7 60S ribosomal protein L17-A 4932
54 1KC8 19 S RIBOSOMAL PROTEIN L22 2238
55 4U3M 53 M7, m7 60S ribosomal protein L17-A 4932
56 1N8R 19 S 50S ribosomal protein L22P 2238
57 4U3N 53 M7, m7 60S ribosomal protein L17-A 4932
58 1Q81 20 S 50S ribosomal protein L22P 2238
59 1Q82 20 S 50S ribosomal protein L22P 2238
60 1QVF 20 Q 50S ribosomal protein L22P 2238
61 4U52 53 M7, m7 60S ribosomal protein L17-A 4932
62 4U4Q 53 M7, m7 60S ribosomal protein L17-A 4932
63 1NJI 19 S 50S ribosomal protein L22P 2238
64 4U6F 53 M7, m7 60S ribosomal protein L17-A 4932
65 4U4U 53 M7, m7 60S ribosomal protein L17-A 4932
66 1K73 19 S RIBOSOMAL PROTEIN L22 2238
67 4U4Z 53 M7, m7 60S ribosomal protein L17-A 4932
68 4U4Y 53 M7, m7 60S ribosomal protein L17-A 4932
69 4U4N 53 M7, m7 60S ribosomal protein L17-A 4932
70 4U55 53 M7, m7 60S ribosomal protein L17-A 4932
71 1K9M 19 S RIBOSOMAL PROTEIN L22 2238
72 1KD1 19 S RIBOSOMAL PROTEIN L22 2238
73 3I55 19 R 50S ribosomal protein L22P 2238
74 4U51 53 M7, m7 60S ribosomal protein L17-A 4932
75 1K8A 19 S RIBOSOMAL PROTEIN L22 2238
76 4U53 53 M7, m7 60S ribosomal protein L17-A 4932
77 1Q86 20 S 50S ribosomal protein L22P 2238
78 4U50 53 M7, m7 60S ribosomal protein L17-A 4932
79 1M1K 19 S RIBOSOMAL PROTEIN L22 2238
80 3G4S 19 R 50S ribosomal protein L22P 2238
81 1W2B 22 Q 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 2238
82 4U56 53 M7, m7 60S ribosomal protein L17-A 4932
83 2QA4 20 R 50S ribosomal protein L22P 2238
84 1Q7Y 20 S 50S ribosomal protein L22P 2238
85 4U4O 53 M7, m7 60S ribosomal protein L17-A 4932
86 4V8P 38 BQ, CQ, EQ, GQ RPL17 5911
87 4V7R 46 BQ, DQ 60S ribosomal protein L17-A 4932
88 5FL8 16 P 60S ribosomal protein L17-A 4932
89 5APN 18 P 60S ribosomal protein L17-A 4932
90 5APO 18 P 60S ribosomal protein L17-A 4932
91 3JBN 63 AW 60S ribosomal protein uL22 5833
92 3JBO 63 AW 60S ribosomal protein uL22 5833
93 3JBP 63 AW 60S ribosomal protein uL22 5833
94 5A8L 3 D 60S RIBOSOMAL PROTEIN L17 9606
95 3JAN 40 P Ribosomal protein uL22 SEE REMARK 999 9986
96 3JAJ 40 P Ribosomal protein uL22 SEE REMARK 999 9986
97 3JAG 15 P uL22 9986
98 3JAH 15 P uL22 9986
99 3JAI 15 P uL22 9986
100 4UG0 18 LP 60S RIBOSOMAL PROTEIN L17 9606
101 5AJ0 18 AP 60S ribosomal protein L17 9606
102 3J92 15 P uL22 9986
103 4D67 15 P 60S RIBOSOMAL PROTEIN L17 9986
104 4D5Y 15 P 60S RIBOSOMAL PROTEIN UL22 9986
105 4V3P 48 LV 60S ribosomal protein L17 4565
106 3J7O 18 P Ribosomal protein uL22 9823
107 3J7P 19 P Ribosomal protein uL22 9823
108 3J7Q 18 P Ribosomal protein uL22 9823
109 3J7R 18 P Ribosomal protein uL22 9823
110 4UJC 21 BP 60S RIBOSOMAL PROTEIN L17 9986
111 4UJD 18 AP 60S RIBOSOMAL PROTEIN L17 9986
112 3J79 23 W 60S ribosomal protein uL22 5833
113 3J77 17 67 60S ribosomal protein L17 4932
114 3J78 17 67 60S ribosomal protein L17 4932
115 3J6X 19 57 60S ribosomal protein L17 4932
116 3J6Y 19 57 60S ribosomal protein L17 4932
117 4UJE 52 CP 60S RIBOSOMAL PROTEIN L17 9986
118 4V91 18 P UL22 RIBOSOMAL PROTEIN UL2 28985
119 4V7F 24 U 60S ribosomal protein L17 4932
120 4V7E 50 CP 60S ribosomal protein L22 4565
121 4V8Y 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
122 4V8Z 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
123 4V4N 5 AS 50S ribosomal protein L22P SEE REMARK 999 2190
124 4V6W 54 CP 60S ribosomal protein L17 7227
125 4V6X 54 CP 60S ribosomal protein L17 9606
126 4V8M 51 BR 60S RIBOSOMAL PROTEIN L17, PUTATIVE 185431
127 4V6U 60 BS 50S ribosomal protein L22P 2261
128 4V8T 16 P 60S RIBOSOMAL PROTEIN L17-A 4932
129 4ADX 28 R RPL22 145262
130 4V6I 49 BV 60S ribosomal protein rpL17 (L22p) 4932
131 2WW9 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
132 2WWA 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
133 2WWB 9 I 60S RIBOSOMAL PROTEIN L17-A 4565
134 4V7H 38 BN 60S ribosomal protein L17(A) 5541
135 4V5Z 71 Br 60S Ribosomal protein L17 9612
136 4V4B 33 BN 60S ribosomal protein L17-A 4932