Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 827
95 % 36 68 661
90 % 36 68 690
70 % 36 68 736
50 % 36 176 200
40 % 36 176 221
30 % 44 510 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58908
95 % 1 1 41048
90 % 1 1 39066
70 % 36 68 728
50 % 36 172 207
40 % 36 172 231
30 % 36 172 236
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 417
95 % 36 74 586
90 % 36 74 616
70 % 36 74 646
50 % 36 74 693
40 % 36 74 732
30 % 43 492 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 415
95 % 36 74 584
90 % 36 74 614
70 % 36 74 643
50 % 36 76 665
40 % 36 76 708
30 % 36 79 675
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 470
95 % 36 68 662
90 % 36 68 692
70 % 36 68 738
50 % 36 70 757
40 % 36 70 793
30 % 36 70 784
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2169
95 % 36 68 660
90 % 36 68 688
70 % 36 68 734
50 % 36 68 784
40 % 36 72 759
30 % 36 72 751
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 472
95 % 36 68 665
90 % 36 68 694
70 % 36 68 741
50 % 36 70 759
40 % 36 70 795
30 % 36 71 766
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 486
95 % 36 68 658
90 % 36 68 686
70 % 36 68 731
50 % 36 68 781
40 % 36 68 816
30 % 36 175 230
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 422
95 % 36 74 590
90 % 36 74 620
70 % 36 74 652
50 % 36 76 669
40 % 36 78 689
30 % 43 399 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 421
95 % 36 74 589
90 % 36 74 619
70 % 36 74 651
50 % 36 180 196
40 % 36 180 215
30 % 36 180 225
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 449
95 % 34 70 632
90 % 34 70 661
70 % 34 70 710
50 % 34 70 760
40 % 34 70 798
30 % 34 70 788
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 423
95 % 36 74 591
90 % 36 74 621
70 % 36 74 653
50 % 36 74 698
40 % 36 74 735
30 % 36 74 727
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 468
95 % 36 68 659
90 % 36 68 687
70 % 36 68 732
50 % 36 68 782
40 % 36 70 790
30 % 36 71 763
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 474
95 % 36 68 667
90 % 36 68 696
70 % 36 68 743
50 % 36 68 787
40 % 36 68 820
30 % 36 68 809
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62252
95 % 3 5 13932
90 % 3 5 13677
70 % 3 5 12834
50 % 3 5 11458
40 % 3 5 10390
30 % 3 5 9014
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68547
95 % 1 1 47486
90 % 1 1 45140
70 % 3 21 2849
50 % 7 30 1903
40 % 7 129 298
30 % 26 152 267
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 476
95 % 36 68 670
90 % 36 68 699
70 % 36 68 747
50 % 36 69 769
40 % 36 69 809
30 % 36 69 802
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69950
95 % 36 68 671
90 % 36 68 700
70 % 36 68 748
50 % 36 173 203
40 % 36 173 226
30 % 36 173 233
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 473
95 % 36 68 666
90 % 36 68 695
70 % 36 68 742
50 % 36 68 786
40 % 36 68 819
30 % 36 169 240
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 467
95 % 36 68 657
90 % 36 68 685
70 % 36 68 730
50 % 36 68 780
40 % 36 174 224
30 % 44 501 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2152
95 % 36 68 654
90 % 36 68 682
70 % 36 68 726
50 % 36 171 206
40 % 36 173 225
30 % 36 173 232
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52160
95 % 36 74 575
90 % 36 74 606
70 % 36 74 639
50 % 36 74 687
40 % 36 180 212
30 % 36 180 222
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9818
95 % 36 74 580
90 % 36 74 612
70 % 36 74 642
50 % 36 74 689
40 % 36 76 706
30 % 37 78 683
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 416
95 % 36 74 585
90 % 36 74 615
70 % 36 74 644
50 % 36 74 691
40 % 37 180 214
30 % 37 180 224
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2180
95 % 3 21 2818
90 % 36 68 691
70 % 36 68 737
50 % 51 105 322
40 % 58 122 278
30 % 58 124 279
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61157
95 % 1 1 42297
90 % 1 7 9912
70 % 3 27 2122
50 % 36 74 692
40 % 36 79 677
30 % 36 79 677
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 418
95 % 36 74 587
90 % 36 74 617
70 % 36 74 649
50 % 36 74 697
40 % 37 77 700
30 % 37 78 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 20 R 50S ribosomal protein L22P 2238
2 1VQO 20 R 50S ribosomal protein L22P 2238
3 1VQ8 20 R 50S ribosomal protein L22P 2238
4 1S72 20 R 50S ribosomal protein L22P 2238
5 1JJ2 19 Q RIBOSOMAL PROTEIN L22 2238
6 1YHQ 20 R 50S ribosomal protein L22P 2238
7 1VQP 20 R 50S ribosomal protein L22P 2238
8 1VQM 20 R 50S ribosomal protein L22P 2238
9 3CC2 18 R 50S ribosomal protein L22P 2238
10 1VQL 20 R 50S ribosomal protein L22P 2238
11 1VQK 20 R 50S ribosomal protein L22P 2238
12 1VQN 21 R 50S ribosomal protein L22P 2238
13 1YIJ 20 R 50S ribosomal protein L22P 2238
14 1YI2 20 R 50S ribosomal protein L22P 2238
15 1VQ9 20 R 50S ribosomal protein L22P 2238
16 1VQ7 20 R 50S ribosomal protein L22P 2238
17 3CCM 18 R 50S ribosomal protein L22P 2238
18 1VQ5 20 R 50S ribosomal protein L22P 2238
19 3CCJ 18 R 50S ribosomal protein L22P 2238
20 3CC7 18 R 50S ribosomal protein L22P 2238
21 1YIT 24 R 50S RIBOSOMAL PROTEIN L22P 2238
22 3CCE 18 R 50S ribosomal protein L22P 2238
23 3G6E 19 R 50S ribosomal protein L22P 2238
24 3CPW 19 Q 50S ribosomal protein L22P 2238
25 3CCU 18 R 50S ribosomal protein L22P 2238
26 1VQ6 21 R 50S ribosomal protein L22P 2238
27 1M90 20 S RIBOSOMAL PROTEIN L22 2238
28 3CCL 18 R 50S ribosomal protein L22P 2238
29 1YJW 24 R 50S RIBOSOMAL PROTEIN L22P 2238
30 1YJ9 20 R 50S ribosomal protein L22P Q122, Q123, G124 deletion 2238
31 3CD6 18 R 50S ribosomal protein L22P 2238
32 3CCV 18 R 50S ribosomal protein L22P 2238
33 3CC4 18 R 50S ribosomal protein L22P 2238
34 2OTL 19 R 50S ribosomal protein L22P 2238
35 3G71 19 R 50S ribosomal protein L22P 2238
36 1FFK 17 O RIBOSOMAL PROTEIN L22 2238
37 1VQ4 20 R 50S ribosomal protein L22P 2238
38 1YJN 20 R 50S ribosomal protein L22P 2238
39 3CMA 18 R 50S ribosomal protein L22P 2238
40 3CCS 18 R 50S ribosomal protein L22P 2238
41 3CCQ 18 R 50S ribosomal protein L22P 2238
42 3I56 18 R 50S ribosomal protein L22P 2238
43 3CCR 18 R 50S ribosomal protein L22P 2238
44 2OTJ 19 R 50S ribosomal protein L22P 2238
45 4V88 53 BP, DP 60S ribosomal protein L17-A 4932
46 1KQS 21 Q RIBOSOMAL PROTEIN L22 2238
47 3OW2 19 Q 50S ribosomal protein L22P 2238
48 4U4R 53 M7, m7 60S ribosomal protein L17-A 4932
49 3CXC 20 Q RIBOSOMAL PROTEIN L22 2238
50 1QVG 20 Q 50S ribosomal protein L22P 2238
51 3CME 18 R 50S ribosomal protein L22P 2238
52 2QEX 19 R 50S ribosomal protein L22P 2238
53 4U3U 53 M7, m7 60S ribosomal protein L17-A 4932
54 1KC8 19 S RIBOSOMAL PROTEIN L22 2238
55 4U3M 53 M7, m7 60S ribosomal protein L17-A 4932
56 1N8R 19 S 50S ribosomal protein L22P 2238
57 4U3N 53 M7, m7 60S ribosomal protein L17-A 4932
58 1Q81 20 S 50S ribosomal protein L22P 2238
59 1Q82 20 S 50S ribosomal protein L22P 2238
60 1QVF 20 Q 50S ribosomal protein L22P 2238
61 4U52 53 M7, m7 60S ribosomal protein L17-A 4932
62 4U4Q 53 M7, m7 60S ribosomal protein L17-A 4932
63 1NJI 19 S 50S ribosomal protein L22P 2238
64 4U6F 53 M7, m7 60S ribosomal protein L17-A 4932
65 4U4U 53 M7, m7 60S ribosomal protein L17-A 4932
66 1K73 19 S RIBOSOMAL PROTEIN L22 2238
67 4U4Z 53 M7, m7 60S ribosomal protein L17-A 4932
68 4U4Y 53 M7, m7 60S ribosomal protein L17-A 4932
69 4U4N 53 M7, m7 60S ribosomal protein L17-A 4932
70 4U55 53 M7, m7 60S ribosomal protein L17-A 4932
71 1K9M 19 S RIBOSOMAL PROTEIN L22 2238
72 1KD1 19 S RIBOSOMAL PROTEIN L22 2238
73 5DAT 53 M7, m7 60S ribosomal protein L17-A 4932
74 3I55 19 R 50S ribosomal protein L22P 2238
75 5I4L 53 M7, m7 60S ribosomal protein L17-A 4932
76 4U51 53 M7, m7 60S ribosomal protein L17-A 4932
77 1K8A 19 S RIBOSOMAL PROTEIN L22 2238
78 4U53 53 M7, m7 60S ribosomal protein L17-A 4932
79 1Q86 20 S 50S ribosomal protein L22P 2238
80 4U50 53 M7, m7 60S ribosomal protein L17-A 4932
81 5LYB 53 M7, m7 60S ribosomal protein L17-A 4932
82 1M1K 19 S RIBOSOMAL PROTEIN L22 2238
83 3G4S 19 R 50S ribosomal protein L22P 2238
84 1W2B 22 Q 50S RIBOSOMAL PROTEIN L22P HMAL22, HL23, RIBOSOMAL PROTEIN L22 2238
85 4U56 53 M7, m7 60S ribosomal protein L17-A 4932
86 2QA4 20 R 50S ribosomal protein L22P 2238
87 5TGA 53 M7, m7 60S ribosomal protein L17-A 4932
88 1Q7Y 20 S 50S ribosomal protein L22P 2238
89 5FCJ 53 M7, m7 60S ribosomal protein L17-A 4932
90 4U4O 53 M7, m7 60S ribosomal protein L17-A 4932
91 5DGV 53 M7, m7 60S ribosomal protein L17-A 4932
92 5DGE 53 M7, m7 60S ribosomal protein L17-A 4932
93 4V8P 38 BQ, CQ, EQ, GQ RPL17 5911
94 5FCI 53 M7, m7 60S ribosomal protein L17-A 4932
95 5DC3 53 M7, m7 60S ribosomal protein L17-A 4932
96 5DGF 53 M7, m7 60S ribosomal protein L17-A 4932
97 5TGM 53 M7, m7 60S ribosomal protein L17-A 4932
98 4V7R 46 BQ, DQ 60S ribosomal protein L17-A 4932
99 5UMD 23 W 60S ribosomal protein L17, putative 5833
100 5MC6 64 AX 60S ribosomal protein L17-A 4932
101 5H4P 17 P 60S ribosomal protein L17-A 4932
102 5M1J 66 P5 60S ribosomal protein L17-A 4932
103 5LZS 15 P Uncharacterized protein 9986
104 5LZT 15 P uL22 9986
105 5LZU 15 P uL22 9986
106 5LZV 15 P uL22 9986
107 5LZW 15 P uL22 9986
108 5LZX 15 P uL22 9986
109 5LZY 15 P uL22 9986
110 5LZZ 15 P uL22 9986
111 5T62 19 c 60S ribosomal protein L17-A 4932
112 5T6R 18 c 60S ribosomal protein L17-A 4932
113 5T5H 15 R 60S ribosomal protein L17 5693
114 5T2A 16 P uL22 5661
115 5T2C 8 J 60S ribosomal protein L17 9606
116 5LKS 18 LP 60S ribosomal protein L17 9606
117 5JUO 21 U uL22 (yeast L17) 4932
118 5JUP 21 U uL22 (yeast L17) 4932
119 5JUS 21 U uL22 (yeast L17) 4932
120 5JUT 21 U uL22 (yeast L17) 4932
121 5JUU 21 U uL22 (yeast L17) 4932
122 5JCS 31 P 60S ribosomal protein L17-A 4932
123 5IT7 18 PP KLLA0A06336p 28985
124 3JCT 16 P 60S ribosomal protein L17-A 4932
125 3JCS 28 T ribosomal protein L22 5661
126 5GAK 41 R 60S ribosomal protein L17-A 4932
127 5FL8 16 P 60S ribosomal protein L17-A 4932
128 5APN 18 P 60S ribosomal protein L17-A 4932
129 5APO 18 P 60S ribosomal protein L17-A 4932
130 3JBN 63 AW 60S ribosomal protein uL22 5833
131 3JBO 63 AW 60S ribosomal protein uL22 5833
132 3JBP 63 AW 60S ribosomal protein uL22 5833
133 5A8L 3 D 60S RIBOSOMAL PROTEIN L17 9606
134 3JAN 40 P Ribosomal protein uL22 SEE REMARK 999 9986
135 3JAJ 40 P Ribosomal protein uL22 SEE REMARK 999 9986
136 3JAG 15 P uL22 9986
137 3JAH 15 P uL22 9986
138 3JAI 15 P uL22 9986
139 4UG0 18 LP 60S RIBOSOMAL PROTEIN L17 9606
140 5AJ0 18 AP 60S ribosomal protein L17 9606
141 3J92 15 P uL22 9986
142 4D67 15 P 60S RIBOSOMAL PROTEIN L17 9986
143 4D5Y 15 P 60S RIBOSOMAL PROTEIN UL22 9986
144 4V3P 48 LV 60S ribosomal protein L17 4565
145 3J7O 18 P Ribosomal protein uL22 9823
146 3J7P 19 P Ribosomal protein uL22 9823
147 3J7Q 18 P Ribosomal protein uL22 9823
148 3J7R 18 P Ribosomal protein uL22 9823
149 4UJC 21 BP 60S RIBOSOMAL PROTEIN L17 9986
150 4UJD 18 AP 60S RIBOSOMAL PROTEIN L17 9986
151 3J79 23 W 60S ribosomal protein uL22 5833
152 3J77 17 67 60S ribosomal protein L17 4932
153 3J78 17 67 60S ribosomal protein L17 4932
154 3J6X 19 57 60S ribosomal protein L17 4932
155 3J6Y 19 57 60S ribosomal protein L17 4932
156 4UJE 52 CP 60S RIBOSOMAL PROTEIN L17 9986
157 4V91 18 P UL22 RIBOSOMAL PROTEIN UL2 28985
158 4V7F 24 U 60S ribosomal protein L17 4932
159 4V7E 50 CP 60S ribosomal protein L22 4565
160 4V8Y 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
161 4V8Z 50 BP 60S RIBOSOMAL PROTEIN L17-A 4932
162 4V4N 5 AS 50S ribosomal protein L22P SEE REMARK 999 2190
163 4V6W 54 CP 60S ribosomal protein L17 7227
164 4V6X 54 CP 60S ribosomal protein L17 9606
165 4V8M 51 BR 60S RIBOSOMAL PROTEIN L17, PUTATIVE 185431
166 4V6U 60 BS 50S ribosomal protein L22P 2261
167 4V8T 16 P 60S RIBOSOMAL PROTEIN L17-A 4932
168 4ADX 28 R RPL22 145262
169 4V6I 49 BV 60S ribosomal protein rpL17 (L22p) 4932
170 2WW9 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
171 2WWA 9 I 60S RIBOSOMAL PROTEIN L17-A 4932
172 2WWB 9 I 60S RIBOSOMAL PROTEIN L17-A 4565
173 4V7H 38 BN 60S ribosomal protein L17(A) 5541
174 4V5Z 71 Br 60S Ribosomal protein L17 9612
175 4V4B 33 BN 60S ribosomal protein L17-A 4932