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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 515 Members. Sequence cutoff: 90% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 19 Q 50S ribosomal protein L21e 272569  
2 1VQO 19 Q 50S ribosomal protein L21e 2238  
3 1VQ8 19 Q 50S ribosomal protein L21e 2238  
4 1S72 19 Q 50S ribosomal protein L21e 2238  
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238  
6 1YHQ 19 Q 50S ribosomal protein L21e 2238  
7 1VQP 19 Q 50S ribosomal protein L21e 2238  
8 1VQM 19 Q 50S ribosomal protein L21e 2238  
9 3CC2 17 Q 50S ribosomal protein L21e 2238  
10 1VQL 19 Q 50S ribosomal protein L21e 2238  
11 1VQK 19 Q 50S ribosomal protein L21e 2238  
12 1VQN 20 Q 50S ribosomal protein L21e 2238  
13 1YIJ 19 Q 50S ribosomal protein L21e 2238  
14 1YI2 19 Q 50S ribosomal protein L21e 2238  
15 1VQ9 19 Q 50S ribosomal protein L21e 2238  
16 1VQ7 19 Q 50S ribosomal protein L21e 2238  
17 3CCM 17 Q 50S ribosomal protein L21e 2238  
18 1VQ5 19 Q 50S ribosomal protein L21e 2238  
19 3CCJ 17 Q 50S ribosomal protein L21e 2238  
20 3CC7 17 Q 50S ribosomal protein L21e 2238  
21 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238  
22 3CCE 17 Q 50S ribosomal protein L21e 2238  
23 3G6E 18 Q 50S ribosomal protein L21e 2238  
24 3CPW 18 P 50S ribosomal protein L21e 2238  
25 3CCU 17 Q 50S ribosomal protein L21e 2238  
26 1VQ6 20 Q 50S ribosomal protein L21e 2238  
27 1M90 19 R RIBOSOMAL PROTEIN L21E 2238  
28 3CCL 17 Q 50S ribosomal protein L21e 2238  
29 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238  
30 1YJ9 19 Q 50S ribosomal protein L21e 2238  
31 3CD6 17 Q 50S ribosomal protein L21e 2238  
32 3CCV 17 Q 50S ribosomal protein L21e 2238  
33 3CC4 17 Q 50S ribosomal protein L21e 2238  
34 2OTL 18 Q 50S ribosomal protein L21e 2238  
35 3G71 18 Q 50S ribosomal protein L21e 2238  
36 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238  
37 1VQ4 19 Q 50S ribosomal protein L21e 2238  
38 1YJN 19 Q 50S ribosomal protein L21e 2238  
39 3CMA 17 Q 50S ribosomal protein L21e 2238  
40 3CCS 17 Q 50S ribosomal protein L21e 2238  
41 3CCQ 17 Q 50S ribosomal protein L21e 2238  
42 3I56 17 Q 50S ribosomal protein L21e 2238  
43 3CCR 17 Q 50S ribosomal protein L21e 2238  
44 2OTJ 18 Q 50S ribosomal protein L21e 2238  
45 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238  
46 3OW2 18 P 50S ribosomal protein L21e 2238  
47 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238  
48 1QVG 19 P 50S ribosomal protein L21e 2238  
49 3CME 17 Q 50S ribosomal protein L21e 2238  
50 2QEX 18 Q 50S ribosomal protein L21e 2238  
51 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238  
52 1N8R 18 R 50S ribosomal protein L21e 2238  
53 1Q81 19 R 50S ribosomal protein L21e 2238  
54 1Q82 19 R 50S ribosomal protein L21e 2238  
55 1QVF 19 P 50S ribosomal protein L21e 2238  
56 1NJI 18 R 50S ribosomal protein L21e 2238  
57 1K73 18 R RIBOSOMAL PROTEIN L21E 2238  
58 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238  
59 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238  
60 3I55 18 Q 50S ribosomal protein L21e 2238  
61 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238  
62 1Q86 19 R 50S ribosomal protein L21e 2238  
63 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238  
64 3G4S 18 Q 50S ribosomal protein L21e 2238  
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238  
66 2QA4 19 Q 50S ribosomal protein L21e 2238  
67 1Q7Y 19 R 50S ribosomal protein L21e 2238  
68 4ADX 27 Q RPL21E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 685
95% 36 68 488
90% 36 68 511
70% 36 68 562
50% 36 128 228
40% 36 128 257
30% 41 366 45
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50769
95% 1 1 35558
90% 1 1 33951
70% 36 68 555
50% 36 126 236
40% 36 126 264
30% 36 126 279
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 292
95% 36 74 426
90% 36 74 452
70% 36 74 488
50% 36 74 557
40% 36 74 597
30% 40 358 50
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 290
95% 36 74 423
90% 36 74 450
70% 36 74 485
50% 36 76 534
40% 36 76 575
30% 36 78 553
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 331
95% 36 68 490
90% 36 68 514
70% 36 68 565
50% 36 70 612
40% 36 70 649
30% 36 70 646
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1773
95% 36 68 486
90% 36 68 509
70% 36 68 560
50% 36 68 644
40% 36 70 646
30% 36 71 628
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 332
95% 36 68 491
90% 36 68 515
70% 36 68 566
50% 36 70 614
40% 36 70 652
30% 36 71 630
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 343
95% 36 68 484
90% 36 68 507
70% 36 68 558
50% 36 68 641
40% 36 68 674
30% 36 129 268
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 299
95% 36 74 431
90% 36 74 457
70% 36 74 494
50% 36 76 538
40% 36 78 550
30% 40 310 61
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 295
95% 36 74 429
90% 36 74 455
70% 36 74 492
50% 36 135 218
40% 36 135 242
30% 36 135 256
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 319
95% 34 70 466
90% 34 70 489
70% 34 70 538
50% 34 70 615
40% 34 70 653
30% 34 70 648
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 301
95% 36 74 432
90% 36 74 458
70% 36 74 495
50% 36 74 564
40% 36 74 602
30% 36 74 597
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 329
95% 36 68 485
90% 36 68 508
70% 36 68 559
50% 36 68 642
40% 36 70 645
30% 36 71 627
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 334
95% 36 68 493
90% 36 68 517
70% 36 68 568
50% 36 68 648
40% 36 68 678
30% 36 68 675
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53805
95% 3 5 11926
90% 3 5 11715
70% 3 5 11053
50% 3 5 9921
40% 3 5 9066
30% 3 5 7916
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59582
95% 1 1 41472
90% 1 1 39607
70% 3 21 2383
50% 7 30 1612
40% 7 84 399
30% 26 107 328
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 336
95% 36 68 495
90% 36 68 519
70% 36 68 570
50% 36 69 632
40% 36 69 669
30% 36 69 665
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 60890
95% 36 68 496
90% 36 68 520
70% 36 68 571
50% 36 128 229
40% 36 128 258
30% 36 128 271
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 333
95% 36 68 492
90% 36 68 516
70% 36 68 567
50% 36 68 647
40% 36 68 677
30% 36 127 275
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 483
90% 36 68 506
70% 36 68 557
50% 36 68 640
40% 36 127 261
30% 41 361 48
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1752
95% 36 68 480
90% 36 68 503
70% 36 68 554
50% 36 126 235
40% 36 128 255
30% 36 128 270
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44841
95% 36 74 416
90% 36 74 443
70% 36 74 481
50% 36 74 550
40% 36 132 248
30% 36 132 261
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 8281
95% 36 74 420
90% 36 74 447
70% 36 74 484
50% 36 74 552
40% 36 76 571
30% 36 77 561
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 291
95% 36 74 425
90% 36 74 451
70% 36 74 486
50% 36 74 555
40% 37 134 244
30% 37 134 258
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1784
95% 3 21 2327
90% 36 68 513
70% 36 68 564
50% 51 95 327
40% 58 105 302
30% 58 107 309
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52810
95% 1 1 36695
90% 1 7 8464
70% 3 27 1754
50% 36 74 556
40% 36 79 537
30% 36 79 544
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 293
95% 36 74 427
90% 36 74 453
70% 36 74 491
50% 36 74 560
40% 37 77 561
30% 37 78 556
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.