Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 44 759
95 % 36 68 543
90 % 36 68 573
70 % 36 68 623
50 % 36 146 222
40 % 36 146 247
30 % 44 445 35
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55629
95 % 1 1 38815
90 % 1 1 36984
70 % 36 68 616
50 % 36 142 230
40 % 36 142 258
30 % 36 142 266
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 320
95 % 36 74 476
90 % 36 74 504
70 % 36 74 548
50 % 36 74 633
40 % 36 74 680
30 % 43 434 38
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 318
95 % 36 74 474
90 % 36 74 502
70 % 36 74 545
50 % 36 76 613
40 % 36 76 656
30 % 36 78 642
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 366
95 % 36 68 545
90 % 36 68 575
70 % 36 68 626
50 % 36 70 683
40 % 36 70 730
30 % 36 70 734
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1996
95 % 36 68 542
90 % 36 68 571
70 % 36 68 622
50 % 36 68 709
40 % 36 70 727
30 % 36 71 716
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 368
95 % 36 68 547
90 % 36 68 577
70 % 36 68 629
50 % 36 70 684
40 % 36 70 731
30 % 36 71 719
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 67 378
95 % 36 68 540
90 % 36 68 569
70 % 36 68 620
50 % 36 68 707
40 % 36 68 746
30 % 36 145 258
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 326
95 % 36 74 481
90 % 36 74 510
70 % 36 74 555
50 % 36 76 617
40 % 36 78 633
30 % 43 371 55
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 324
95 % 36 74 479
90 % 36 74 508
70 % 36 74 553
50 % 36 150 215
40 % 36 150 238
30 % 36 150 249
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 70 348
95 % 34 70 519
90 % 34 70 547
70 % 34 70 596
50 % 34 70 685
40 % 34 70 732
30 % 34 70 735
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 327
95 % 36 74 482
90 % 36 74 511
70 % 36 74 556
50 % 36 74 638
40 % 36 74 685
30 % 36 74 685
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 363
95 % 36 68 541
90 % 36 68 570
70 % 36 68 621
50 % 36 68 708
40 % 36 70 725
30 % 36 71 715
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 370
95 % 36 68 549
90 % 36 68 579
70 % 36 68 631
50 % 36 68 712
40 % 36 68 750
30 % 36 68 755
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58841
95 % 3 5 13135
90 % 3 5 12894
70 % 3 5 12131
50 % 3 5 10854
40 % 3 5 9880
30 % 3 5 8590
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64935
95 % 1 1 45041
90 % 1 1 42898
70 % 3 21 2643
50 % 7 30 1776
40 % 7 99 365
30 % 26 122 310
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 371
95 % 36 68 550
90 % 36 68 580
70 % 36 68 632
50 % 36 69 698
40 % 36 69 740
30 % 36 69 747
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66291
95 % 36 68 552
90 % 36 68 582
70 % 36 68 633
50 % 36 143 224
40 % 36 143 252
30 % 36 143 261
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 369
95 % 36 68 548
90 % 36 68 578
70 % 36 68 630
50 % 36 68 711
40 % 36 68 749
30 % 36 140 270
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 68 362
95 % 36 68 539
90 % 36 68 568
70 % 36 68 619
50 % 36 68 706
40 % 36 145 248
30 % 44 440 37
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1973
95 % 36 68 537
90 % 36 68 565
70 % 36 68 615
50 % 36 141 229
40 % 36 143 251
30 % 36 143 260
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49182
95 % 36 74 467
90 % 36 74 496
70 % 36 74 541
50 % 36 74 627
40 % 36 150 235
30 % 36 150 247
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 9195
95 % 36 74 470
90 % 36 74 499
70 % 36 74 544
50 % 36 74 629
40 % 36 76 655
30 % 36 77 651
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 319
95 % 36 74 475
90 % 36 74 503
70 % 36 74 546
50 % 36 74 631
40 % 37 151 234
30 % 37 151 246
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 2005
95 % 3 21 2595
90 % 36 68 574
70 % 36 68 624
50 % 51 98 345
40 % 58 112 314
30 % 58 114 325
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57797
95 % 1 1 40025
90 % 1 7 9340
70 % 3 27 1949
50 % 36 74 632
40 % 36 79 620
30 % 36 79 630
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 74 321
95 % 36 74 477
90 % 36 74 506
70 % 36 74 551
50 % 36 74 636
40 % 37 77 645
30 % 37 78 645

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 19 Q 50S ribosomal protein L21e 2238
2 1VQO 19 Q 50S ribosomal protein L21e 2238
3 1VQ8 19 Q 50S ribosomal protein L21e 2238
4 1S72 19 Q 50S ribosomal protein L21e 2238
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238
6 1YHQ 19 Q 50S ribosomal protein L21e 2238
7 1VQP 19 Q 50S ribosomal protein L21e 2238
8 1VQM 19 Q 50S ribosomal protein L21e 2238
9 3CC2 17 Q 50S ribosomal protein L21e 2238
10 1VQL 19 Q 50S ribosomal protein L21e 2238
11 1VQK 19 Q 50S ribosomal protein L21e 2238
12 1VQN 20 Q 50S ribosomal protein L21e 2238
13 1YIJ 19 Q 50S ribosomal protein L21e 2238
14 1YI2 19 Q 50S ribosomal protein L21e 2238
15 1VQ9 19 Q 50S ribosomal protein L21e 2238
16 1VQ7 19 Q 50S ribosomal protein L21e 2238
17 3CCM 17 Q 50S ribosomal protein L21e 2238
18 1VQ5 19 Q 50S ribosomal protein L21e 2238
19 3CCJ 17 Q 50S ribosomal protein L21e 2238
20 3CC7 17 Q 50S ribosomal protein L21e 2238
21 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
22 3CCE 17 Q 50S ribosomal protein L21e 2238
23 3G6E 18 Q 50S ribosomal protein L21e 2238
24 3CPW 18 P 50S ribosomal protein L21e 2238
25 3CCU 17 Q 50S ribosomal protein L21e 2238
26 1VQ6 20 Q 50S ribosomal protein L21e 2238
27 1M90 19 R RIBOSOMAL PROTEIN L21E 2238
28 3CCL 17 Q 50S ribosomal protein L21e 2238
29 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
30 1YJ9 19 Q 50S ribosomal protein L21e 2238
31 3CD6 17 Q 50S ribosomal protein L21e 2238
32 3CCV 17 Q 50S ribosomal protein L21e 2238
33 3CC4 17 Q 50S ribosomal protein L21e 2238
34 2OTL 18 Q 50S ribosomal protein L21e 2238
35 3G71 18 Q 50S ribosomal protein L21e 2238
36 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238
37 1VQ4 19 Q 50S ribosomal protein L21e 2238
38 1YJN 19 Q 50S ribosomal protein L21e 2238
39 3CMA 17 Q 50S ribosomal protein L21e 2238
40 3CCS 17 Q 50S ribosomal protein L21e 2238
41 3CCQ 17 Q 50S ribosomal protein L21e 2238
42 3I56 17 Q 50S ribosomal protein L21e 2238
43 3CCR 17 Q 50S ribosomal protein L21e 2238
44 2OTJ 18 Q 50S ribosomal protein L21e 2238
45 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238
46 3OW2 18 P 50S ribosomal protein L21e 2238
47 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238
48 1QVG 19 P 50S ribosomal protein L21e 2238
49 3CME 17 Q 50S ribosomal protein L21e 2238
50 2QEX 18 Q 50S ribosomal protein L21e 2238
51 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238
52 1N8R 18 R 50S ribosomal protein L21e 2238
53 1Q81 19 R 50S ribosomal protein L21e 2238
54 1Q82 19 R 50S ribosomal protein L21e 2238
55 1QVF 19 P 50S ribosomal protein L21e 2238
56 1NJI 18 R 50S ribosomal protein L21e 2238
57 1K73 18 R RIBOSOMAL PROTEIN L21E 2238
58 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238
59 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238
60 3I55 18 Q 50S ribosomal protein L21e 2238
61 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238
62 1Q86 19 R 50S ribosomal protein L21e 2238
63 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238
64 3G4S 18 Q 50S ribosomal protein L21e 2238
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238
66 2QA4 19 Q 50S ribosomal protein L21e 2238
67 1Q7Y 19 R 50S ribosomal protein L21e 2238
68 4V4N 64 AR 50S ribosomal protein L21E SEE REMARK 999 2190
69 4V6U 48 BR 50S ribosomal protein L21e 2261
70 4ADX 27 Q RPL21E 145262