Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 617
95 % 35 68 759 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 786
70 % 35 68 838
50 % 35 202 205
40 % 45 614 23
30 % 45 614 39
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48958
95 % 1 1 40556
90 % 1 1 38614
70 % 35 68 839
50 % 35 201 207
40 % 35 201 224
30 % 35 201 241
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 545
95 % 35 74 687 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 709
70 % 35 74 754
50 % 35 74 810
40 % 35 199 227
30 % 35 199 244
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 538
95 % 35 74 675 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 699
70 % 35 74 745
50 % 35 76 783
40 % 35 76 816
30 % 35 79 780
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 632
95 % 35 68 778 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 805
70 % 35 68 858
50 % 35 70 862
40 % 35 70 892
30 % 35 70 880
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2892
95 % 35 68 780 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 807
70 % 35 68 859
50 % 35 68 907
40 % 35 72 858
30 % 35 72 863
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 618
95 % 35 68 760 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 787
70 % 35 68 840
50 % 35 70 871
40 % 35 70 901
30 % 35 71 874
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 644
95 % 35 68 769 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 796
70 % 35 68 848
50 % 35 68 896
40 % 35 68 920
30 % 35 199 245
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 549
95 % 35 74 688 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 712
70 % 35 74 759
50 % 35 77 769
40 % 44 475 45
30 % 44 475 64
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 542
95 % 35 74 681 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 703
70 % 35 74 749
50 % 35 208 198
40 % 35 209 216
30 % 35 209 234
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 590
95 % 33 70 732 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 33 70 760
70 % 33 70 805
50 % 33 70 863
40 % 33 70 886
30 % 33 70 882
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 543
95 % 35 74 682 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 704
70 % 35 74 750
50 % 35 74 805
40 % 44 435 52
30 % 44 461 67
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 626
95 % 35 68 770 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 797
70 % 35 68 849
50 % 35 68 897
40 % 35 70 891
30 % 35 71 873
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 625
95 % 35 68 767 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 794
70 % 35 68 846
50 % 35 68 893
40 % 35 68 918
30 % 35 70 884
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59293
95 % 3 5 15414 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 15087
70 % 3 5 14100
50 % 3 5 12471
40 % 3 5 11173
30 % 3 5 9507
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2795
95 % 3 21 3127 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 3 21 3176
70 % 3 21 3124
50 % 7 30 2140
40 % 7 151 289
30 % 9 155 292
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 633
95 % 35 68 761 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 788
70 % 35 68 841
50 % 35 69 873
40 % 35 69 904
30 % 35 69 891
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59292
95 % 35 68 772 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 799
70 % 35 68 852
50 % 35 194 210
40 % 35 194 232
30 % 35 194 247
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 615
95 % 35 68 757 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 784
70 % 35 68 836
50 % 35 68 889
40 % 35 189 240
30 % 35 189 254
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 630
95 % 35 68 776 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 802
70 % 35 68 834
50 % 35 68 902
40 % 35 199 228
30 % 45 603 40
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 2251
95 % 35 68 777 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 803
70 % 35 68 856
50 % 35 192 213
40 % 35 192 234
30 % 35 192 249
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61659
95 % 35 74 686 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 708
70 % 35 74 753
50 % 35 74 809
40 % 35 207 217
30 % 35 207 235
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 51 880
95 % 35 74 674 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 698
70 % 35 74 744
50 % 35 74 800
40 % 35 76 815
30 % 36 78 793
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 544
95 % 35 74 684 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 707
70 % 35 74 752
50 % 35 74 808
40 % 36 201 223
30 % 36 201 240
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2812
95 % 3 21 3142 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 783
70 % 35 68 835
50 % 51 107 400
40 % 58 130 314
30 % 72 276 155
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61656
95 % 1 1 50243
90 % 1 7 11399
70 % 3 27 2445
50 % 35 74 803
40 % 35 79 774
30 % 35 79 786
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 541
95 % 35 74 679 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 695
70 % 35 74 740
50 % 35 74 802
40 % 36 78 797
30 % 36 78 795

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 19 Q 50S ribosomal protein L21e 2238
2 1VQO 19 Q 50S ribosomal protein L21e 2238
3 1VQ8 19 Q 50S ribosomal protein L21e 2238
4 1S72 19 Q 50S ribosomal protein L21e 2238
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238
6 1YHQ 19 Q 50S ribosomal protein L21e 2238
7 1VQP 19 Q 50S ribosomal protein L21e 2238
8 1VQM 19 Q 50S ribosomal protein L21e 2238
9 3CC2 17 Q 50S ribosomal protein L21e 2238
10 1VQL 19 Q 50S ribosomal protein L21e 2238
11 1VQK 19 Q 50S ribosomal protein L21e 2238
12 1VQN 20 Q 50S ribosomal protein L21e 2238
13 1YIJ 19 Q 50S ribosomal protein L21e 2238
14 1YI2 19 Q 50S ribosomal protein L21e 2238
15 1VQ9 19 Q 50S ribosomal protein L21e 2238
16 1VQ7 19 Q 50S ribosomal protein L21e 2238
17 3CCM 17 Q 50S ribosomal protein L21e 2238
18 1VQ5 19 Q 50S ribosomal protein L21e 2238
19 3CC7 17 Q 50S ribosomal protein L21e 2238
20 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
21 3CCE 17 Q 50S ribosomal protein L21e 2238
22 3G6E 18 Q 50S ribosomal protein L21e 2238
23 3CPW 18 P 50S ribosomal protein L21e 2238
24 3CCU 17 Q 50S ribosomal protein L21e 2238
25 1VQ6 20 Q 50S ribosomal protein L21e 2238
26 1M90 19 R RIBOSOMAL PROTEIN L21E 2238
27 3CCL 17 Q 50S ribosomal protein L21e 2238
28 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
29 1YJ9 19 Q 50S ribosomal protein L21e 2238
30 3CD6 17 Q 50S ribosomal protein L21e 2238
31 3CCV 17 Q 50S ribosomal protein L21e 2238
32 3CC4 17 Q 50S ribosomal protein L21e 2238
33 2OTL 18 Q 50S ribosomal protein L21e 2238
34 3G71 18 Q 50S ribosomal protein L21e 2238
35 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238
36 1VQ4 19 Q 50S ribosomal protein L21e 2238
37 1YJN 19 Q 50S ribosomal protein L21e 2238
38 3CMA 17 Q 50S ribosomal protein L21e 2238
39 3CCS 17 Q 50S ribosomal protein L21e 2238
40 3CCQ 17 Q 50S ribosomal protein L21e 2238
41 3I56 17 Q 50S ribosomal protein L21e 2238
42 3CCR 17 Q 50S ribosomal protein L21e 2238
43 2OTJ 18 Q 50S ribosomal protein L21e 2238
44 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238
45 3OW2 18 P 50S ribosomal protein L21e 2238
46 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238
47 1QVG 19 P 50S ribosomal protein L21e 2238
48 3CME 17 Q 50S ribosomal protein L21e 2238
49 2QEX 18 Q 50S ribosomal protein L21e 2238
50 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238
51 1N8R 18 R 50S ribosomal protein L21e 2238
52 1Q81 19 R 50S ribosomal protein L21e 2238
53 1Q82 19 R 50S ribosomal protein L21e 2238
54 1QVF 19 P 50S ribosomal protein L21e 2238
55 1NJI 18 R 50S ribosomal protein L21e 2238
56 1K73 18 R RIBOSOMAL PROTEIN L21E 2238
57 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238
58 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238
59 3I55 18 Q 50S ribosomal protein L21e 2238
60 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238
61 1Q86 19 R 50S ribosomal protein L21e 2238
62 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238
63 3G4S 18 Q 50S ribosomal protein L21e 2238
64 3CCJ 17 Q 50S ribosomal protein L21e 2238
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238
66 2QA4 19 Q 50S ribosomal protein L21e 2238
67 1Q7Y 19 R 50S ribosomal protein L21e 2238
68 4V4N 64 AR 50S ribosomal protein L21E SEE REMARK 999 2190
69 4V6U 48 BR 50S ribosomal protein L21e 2261
70 4ADX 27 Q RPL21E 145262
71 4V4B 36 BQ 60S ribosomal protein L21-A 4932