Sequence Similarity Clusters for the Entities in PDB 1FFK

Entity #1 | Chains: 0
23S RRNA rna, length: 2922 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
RIBOSOMAL PROTEIN L14 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 44 839
95 % 35 68 667 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 68 695
70 % 35 68 747
50 % 35 176 200
40 % 35 176 222
30 % 43 524 31
Entity #11 | Chains: I
RIBOSOMAL PROTEIN L15E protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59724
95 % 1 1 41643
90 % 1 1 39612
70 % 35 68 739
50 % 35 172 210
40 % 35 172 233
30 % 35 172 239
Entity #12 | Chains: J
RIBOSOMAL PROTEIN L15 protein, length: 164 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 424
95 % 35 74 595 Flexibility: No
Max RMSD: 1.9, Avg RMSD: 0.3
PDBFlex
90 % 35 74 625
70 % 35 74 664
50 % 35 74 707
40 % 35 74 743
30 % 42 504 37
Entity #13 | Chains: K
RIBOSOMAL PROTEIN L18 protein, length: 186 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 422
95 % 35 74 593 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 35 74 623
70 % 35 74 661
50 % 35 76 682
40 % 35 76 719
30 % 35 79 684
Entity #14 | Chains: L
RIBOSOMAL PROTEIN L18E protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 477
95 % 35 68 668 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 697
70 % 35 68 749
50 % 35 70 768
40 % 35 70 803
30 % 35 70 793
Entity #15 | Chains: M
RIBOSOMAL PROTEIN L19 protein, length: 148 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2201
95 % 35 68 666 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 35 68 693
70 % 35 68 745
50 % 35 68 797
40 % 35 72 776
30 % 35 72 765
Entity #16 | Chains: N
RIBOSOMAL PROTEIN L21E protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 478
95 % 35 68 670 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 699
70 % 35 68 752
50 % 35 70 769
40 % 35 70 804
30 % 35 71 778
Entity #17 | Chains: O
RIBOSOMAL PROTEIN L22 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 67 491
95 % 35 68 664 Flexibility: No
Max RMSD: 5.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 691
70 % 35 68 742
50 % 35 68 794
40 % 35 68 831
30 % 35 175 233
Entity #18 | Chains: P
RIBOSOMAL PROTEIN L23 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 429
95 % 35 74 600 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.3
PDBFlex
90 % 35 74 630
70 % 35 74 672
50 % 35 76 686
40 % 35 78 699
30 % 42 411 60
Entity #19 | Chains: Q
RIBOSOMAL PROTEIN L24 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 428
95 % 35 74 599 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 629
70 % 35 74 670
50 % 35 180 199
40 % 35 180 217
30 % 35 180 226
Entity #2 | Chains: 9
5S RRNA rna, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
RIBOSOMAL PROTEIN L24E protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 70 458
95 % 33 70 640 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 33 70 665
70 % 33 70 719
50 % 33 70 770
40 % 33 70 806
30 % 33 70 795
Entity #21 | Chains: S
RIBOSOMAL PROTEIN L29 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 74 430
95 % 35 74 601
90 % 35 74 631
70 % 35 74 673
50 % 35 74 715
40 % 42 377 57
30 % 42 403 64
Entity #22 | Chains: T
RIBOSOMAL PROTEIN L30 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 475
95 % 35 68 665 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 692
70 % 35 68 743
50 % 35 68 795
40 % 35 70 800
30 % 35 71 775
Entity #23 | Chains: U
RIBOSOMAL PROTEIN L31E protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 480
95 % 35 68 672 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.3
PDBFlex
90 % 35 68 701
70 % 35 68 754
50 % 35 68 800
40 % 35 68 835
30 % 35 68 820
Entity #24 | Chains: V
RIBOSOMAL PROTEIN L32E protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63071
95 % 3 5 14163 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.6
PDBFlex
90 % 3 5 13896
70 % 3 5 13038
50 % 3 5 11614
40 % 3 5 10531
30 % 3 5 9125
Entity #25 | Chains: W
RIBOSOMAL PROTEIN L37AE protein, length: 73 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69384
95 % 1 1 48079
90 % 1 1 45682
70 % 3 21 2891
50 % 7 30 1927
40 % 7 129 303
30 % 26 152 268
Entity #26 | Chains: X
RIBOSOMAL PROTEIN L37E protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 482
95 % 35 68 675 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 704
70 % 35 68 758
50 % 35 69 782
40 % 35 69 820
30 % 35 69 809
Entity #27 | Chains: Y
RIBOSOMAL PROTEIN L39E protein, length: 49 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70796
95 % 35 68 676 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 705
70 % 35 68 759
50 % 35 173 206
40 % 35 173 229
30 % 35 173 236
Entity #28 | Chains: Z
RIBOSOMAL PROTEIN L44E protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 479
95 % 35 68 671 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 35 68 700
70 % 35 68 753
50 % 35 68 799
40 % 35 68 834
30 % 35 169 244
Entity #29 | Chains: 1
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 68 474
95 % 35 68 663 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 68 690
70 % 35 68 741
50 % 35 68 793
40 % 35 174 227
30 % 43 515 34
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2185
95 % 35 68 660 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 35 68 687
70 % 35 68 737
50 % 35 171 209
40 % 35 173 228
30 % 35 173 235
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L3 protein, length: 337 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52924
95 % 35 74 584 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 35 74 615
70 % 35 74 657
50 % 35 74 701
40 % 35 180 215
30 % 35 180 224
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L4 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 9993
95 % 35 74 589 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.2
PDBFlex
90 % 35 74 621
70 % 35 74 659
50 % 35 74 703
40 % 35 76 717
30 % 36 78 691
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L5 protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 423
95 % 35 74 594 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.4
PDBFlex
90 % 35 74 624
70 % 35 74 662
50 % 35 74 705
40 % 36 180 216
30 % 36 180 225
Entity #7 | Chains: E
RIBOSOMAL PROTEIN L7AE protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 21 2213
95 % 3 21 2857 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.1
PDBFlex
90 % 35 68 696
70 % 35 68 748
50 % 50 105 324
40 % 57 123 281
30 % 57 125 286
Entity #8 | Chains: F
RIBOSOMAL PROTEIN L10E protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61979
95 % 1 1 42893
90 % 1 7 10082
70 % 3 27 2150
50 % 35 74 706
40 % 35 79 688
30 % 35 79 686
Entity #9 | Chains: G
RIBOSOMAL PROTEIN L13 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 74 425
95 % 35 74 596 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 35 74 626
70 % 35 74 667
50 % 35 74 711
40 % 36 77 712
30 % 36 78 695

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4V9F 19 Q 50S ribosomal protein L21e 2238
2 1VQO 19 Q 50S ribosomal protein L21e 2238
3 1VQ8 19 Q 50S ribosomal protein L21e 2238
4 1S72 19 Q 50S ribosomal protein L21e 2238
5 1JJ2 18 P RIBOSOMAL PROTEIN L21E 2238
6 1YHQ 19 Q 50S ribosomal protein L21e 2238
7 1VQP 19 Q 50S ribosomal protein L21e 2238
8 1VQM 19 Q 50S ribosomal protein L21e 2238
9 3CC2 17 Q 50S ribosomal protein L21e 2238
10 1VQL 19 Q 50S ribosomal protein L21e 2238
11 1VQK 19 Q 50S ribosomal protein L21e 2238
12 1VQN 20 Q 50S ribosomal protein L21e 2238
13 1YIJ 19 Q 50S ribosomal protein L21e 2238
14 1YI2 19 Q 50S ribosomal protein L21e 2238
15 1VQ9 19 Q 50S ribosomal protein L21e 2238
16 1VQ7 19 Q 50S ribosomal protein L21e 2238
17 3CCM 17 Q 50S ribosomal protein L21e 2238
18 1VQ5 19 Q 50S ribosomal protein L21e 2238
19 3CC7 17 Q 50S ribosomal protein L21e 2238
20 1YIT 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
21 3CCE 17 Q 50S ribosomal protein L21e 2238
22 3G6E 18 Q 50S ribosomal protein L21e 2238
23 3CPW 18 P 50S ribosomal protein L21e 2238
24 3CCU 17 Q 50S ribosomal protein L21e 2238
25 1VQ6 20 Q 50S ribosomal protein L21e 2238
26 1M90 19 R RIBOSOMAL PROTEIN L21E 2238
27 3CCL 17 Q 50S ribosomal protein L21e 2238
28 1YJW 23 Q 50S RIBOSOMAL PROTEIN L21E 2238
29 1YJ9 19 Q 50S ribosomal protein L21e 2238
30 3CD6 17 Q 50S ribosomal protein L21e 2238
31 3CCV 17 Q 50S ribosomal protein L21e 2238
32 3CC4 17 Q 50S ribosomal protein L21e 2238
33 2OTL 18 Q 50S ribosomal protein L21e 2238
34 3G71 18 Q 50S ribosomal protein L21e 2238
35 1FFK 16 N RIBOSOMAL PROTEIN L21E 2238
36 1VQ4 19 Q 50S ribosomal protein L21e 2238
37 1YJN 19 Q 50S ribosomal protein L21e 2238
38 3CMA 17 Q 50S ribosomal protein L21e 2238
39 3CCS 17 Q 50S ribosomal protein L21e 2238
40 3CCQ 17 Q 50S ribosomal protein L21e 2238
41 3I56 17 Q 50S ribosomal protein L21e 2238
42 3CCR 17 Q 50S ribosomal protein L21e 2238
43 2OTJ 18 Q 50S ribosomal protein L21e 2238
44 1KQS 20 P RIBOSOMAL PROTEIN L21E 2238
45 3OW2 18 P 50S ribosomal protein L21e 2238
46 3CXC 19 P RIBOSOMAL PROTEIN L21E 2238
47 1QVG 19 P 50S ribosomal protein L21e 2238
48 3CME 17 Q 50S ribosomal protein L21e 2238
49 2QEX 18 Q 50S ribosomal protein L21e 2238
50 1KC8 18 R RIBOSOMAL PROTEIN L21E 2238
51 1N8R 18 R 50S ribosomal protein L21e 2238
52 1Q81 19 R 50S ribosomal protein L21e 2238
53 1Q82 19 R 50S ribosomal protein L21e 2238
54 1QVF 19 P 50S ribosomal protein L21e 2238
55 1NJI 18 R 50S ribosomal protein L21e 2238
56 1K73 18 R RIBOSOMAL PROTEIN L21E 2238
57 1K9M 18 R RIBOSOMAL PROTEIN L21E 2238
58 1KD1 18 R RIBOSOMAL PROTEIN L21E 2238
59 3I55 18 Q 50S ribosomal protein L21e 2238
60 1K8A 18 R RIBOSOMAL PROTEIN L21E 2238
61 1Q86 19 R 50S ribosomal protein L21e 2238
62 1M1K 18 R RIBOSOMAL PROTEIN L21E 2238
63 3G4S 18 Q 50S ribosomal protein L21e 2238
64 3CCJ 17 Q 50S ribosomal protein L21e 2238
65 1W2B 21 P 50S RIBOSOMAL PROTEIN L21E 2238
66 2QA4 19 Q 50S ribosomal protein L21e 2238
67 1Q7Y 19 R 50S ribosomal protein L21e 2238
68 4V4N 64 AR 50S ribosomal protein L21E SEE REMARK 999 2190
69 4V6U 48 BR 50S ribosomal protein L21e 2261
70 4ADX 27 Q RPL21E 145262
71 4V4B 36 BQ 60S ribosomal protein L21-A 4932