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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 457 Members. Sequence cutoff: 95% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4V9F 18 P 50S ribosomal protein L19e 272569  
2 1VQO 18 P 50S ribosomal protein L19E 2238  
3 1VQ8 18 P 50S ribosomal protein L19E 2238  
4 1S72 18 P 50S ribosomal protein L19E 2238  
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238  
6 1YHQ 18 P 50S ribosomal protein L19E 2238  
7 1VQP 18 P 50S ribosomal protein L19E 2238  
8 1VQM 18 P 50S ribosomal protein L19E 2238  
9 3CC2 16 P 50S ribosomal protein L19e 2238  
10 1VQL 18 P 50S ribosomal protein L19E 2238  
11 1VQK 18 P 50S ribosomal protein L19E 2238  
12 1VQN 19 P 50S ribosomal protein L19E 2238  
13 1YIJ 18 P 50S ribosomal protein L19E 2238  
14 1YI2 18 P 50S ribosomal protein L19E 2238  
15 1VQ9 18 P 50S ribosomal protein L19E 2238  
16 1VQ7 18 P 50S ribosomal protein L19E 2238  
17 3CCM 16 P 50S ribosomal protein L19e 272569  
18 1VQ5 18 P 50S ribosomal protein L19E 2238  
19 3CCJ 16 P 50S ribosomal protein L19e 272569  
20 3CC7 16 P 50S ribosomal protein L19e 2238  
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
22 3CCE 16 P 50S ribosomal protein L19e 272569  
23 3G6E 17 P 50S ribosomal protein L19e 2238  
24 3CPW 17 O 50S ribosomal protein L19e 272569  
25 3CCU 16 P 50S ribosomal protein L19e 272569  
26 1VQ6 19 P 50S ribosomal protein L19E 2238  
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238  
28 3CCL 16 P 50S ribosomal protein L19e 272569  
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
30 1YJ9 18 P 50S ribosomal protein L19E 2238  
31 3CD6 16 P 50S ribosomal protein L19e 272569  
32 3CCV 16 P 50S ribosomal protein L19e 272569  
33 3CC4 16 P 50S ribosomal protein L19e 272569  
34 2OTL 17 P 50S ribosomal protein L19e 2238  
35 3G71 17 P 50S ribosomal protein L19e 2238  
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238  
37 1VQ4 18 P 50S ribosomal protein L19E 2238  
38 1YJN 18 P 50S ribosomal protein L19E 2238  
39 3CMA 16 P 50S ribosomal protein L19e 2238  
40 3CCS 16 P 50S ribosomal protein L19e 272569  
41 3CCQ 16 P 50S ribosomal protein L19e 272569  
42 3I56 16 P 50S ribosomal protein L19e 2238  
43 3CCR 16 P 50S ribosomal protein L19e 272569  
44 2OTJ 17 P 50S ribosomal protein L19e 2238  
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238  
46 3OW2 17 O 50S ribosomal protein L19e 2238  
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238  
48 1QVG 18 O 50S ribosomal protein L19E 2238  
49 3CME 16 P 50S ribosomal protein L19e 2238  
50 2QEX 17 P 50S ribosomal protein L19e 2238  
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238  
52 1N8R 17 Q 50S ribosomal protein L19E 2238  
53 1Q81 18 Q 50S ribosomal protein L19E 2238  
54 1Q82 18 Q 50S ribosomal protein L19E 2238  
55 1QVF 18 O 50S ribosomal protein L19E 2238  
56 1NJI 17 Q 50S ribosomal protein L19E 2238  
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238  
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238  
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238  
60 3I55 17 P 50S ribosomal protein L19e 2238  
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238  
62 1Q86 18 Q 50S ribosomal protein L19E 2238  
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238  
64 3G4S 17 P 50S ribosomal protein L19e 2238  
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238  
66 2QA4 18 P 50S ribosomal protein L19e 2238  
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238  
68 4ADX 26 P RPL19E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 623
95% 36 68 459
90% 36 68 483
70% 36 68 517
50% 36 117 234
40% 36 117 264
30% 38 317 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47737
95% 1 1 33521
90% 1 1 32049
70% 36 68 510
50% 36 115 238
40% 36 115 274
30% 36 115 294
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 284
95% 36 74 405
90% 36 74 430
70% 36 74 458
50% 36 74 501
40% 36 74 538
30% 37 309 55
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 403
90% 36 74 428
70% 36 74 456
50% 36 76 482
40% 36 76 516
30% 36 78 508
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 461
90% 36 68 486
70% 36 68 520
50% 36 70 545
40% 36 70 578
30% 36 70 579
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1647
95% 36 68 457
90% 36 68 481
70% 36 68 515
50% 36 68 574
40% 36 70 577
30% 36 71 560
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 324
95% 36 68 463
90% 36 68 488
70% 36 68 522
50% 36 70 548
40% 36 70 582
30% 36 71 563
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 333
95% 36 68 455
90% 36 68 479
70% 36 68 513
50% 36 68 571
40% 36 68 609
30% 36 118 281
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 288
95% 36 74 408
90% 36 74 433
70% 36 74 462
50% 36 76 484
40% 36 78 499
30% 37 272 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 407
90% 36 74 432
70% 36 74 461
50% 36 124 220
40% 36 124 247
30% 36 124 265
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 307
95% 34 70 440
90% 34 70 462
70% 34 70 496
50% 34 70 549
40% 34 70 583
30% 34 70 581
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 289
95% 36 74 409
90% 36 74 434
70% 36 74 463
50% 36 74 505
40% 36 74 541
30% 36 74 540
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 319
95% 36 68 456
90% 36 68 480
70% 36 68 514
50% 36 68 572
40% 36 70 576
30% 36 71 559
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 326
95% 36 68 465
90% 36 68 490
70% 36 68 524
50% 36 68 579
40% 36 68 616
30% 36 68 609
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50679
95% 3 5 11214
90% 3 5 11033
70% 3 5 10428
50% 3 5 9377
40% 3 5 8553
30% 3 5 7507
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56257
95% 1 1 39269
90% 1 1 37554
70% 3 21 2232
50% 7 30 1515
40% 7 73 412
30% 26 96 334
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 328
95% 36 68 467
90% 36 68 492
70% 36 68 526
50% 36 69 562
40% 36 69 601
30% 36 69 598
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57525
95% 36 68 468
90% 36 68 493
70% 36 68 527
50% 36 117 236
40% 36 117 266
30% 36 117 284
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 464
90% 36 68 489
70% 36 68 523
50% 36 68 578
40% 36 68 615
30% 36 116 290
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 454
90% 36 68 478
70% 36 68 512
50% 36 68 569
40% 36 116 268
30% 38 312 54
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1630
95% 35 67 471
90% 35 67 496
70% 35 67 533
50% 35 114 242
40% 35 116 267
30% 35 116 289
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42086
95% 36 74 397
90% 36 74 423
70% 36 74 452
50% 36 74 495
40% 36 121 252
30% 36 121 268
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7689
95% 36 74 401
90% 36 74 426
70% 36 74 455
50% 36 74 498
40% 36 76 515
30% 36 77 514
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 283
95% 36 74 404
90% 36 74 429
70% 36 74 457
50% 36 74 499
40% 36 121 253
30% 36 121 269
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1657
95% 3 21 2177
90% 36 68 485
70% 36 68 519
50% 51 95 298
40% 58 105 287
30% 58 107 303
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49706
95% 1 1 34625
90% 1 7 7970
70% 3 27 1648
50% 36 74 500
40% 36 78 496
30% 36 78 510
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 406
90% 36 74 431
70% 36 74 459
50% 36 74 502
40% 37 77 507
30% 37 78 511
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.