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CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1FFK
Cluster # 452 Members. Sequence cutoff: 95% Cluster size: 68 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4HUB 18 P 50S ribosomal protein L19e 272569  
2 1VQO 18 P 50S ribosomal protein L19E 2238  
3 1VQ8 18 P 50S ribosomal protein L19E 2238  
4 1S72 18 P 50S ribosomal protein L19E 2238  
5 1JJ2 17 O RIBOSOMAL PROTEIN L19E 2238  
6 1YHQ 18 P 50S ribosomal protein L19E 2238  
7 1VQP 18 P 50S ribosomal protein L19E 2238  
8 1VQM 18 P 50S ribosomal protein L19E 2238  
9 3CC2 16 P 50S ribosomal protein L19e 2238  
10 1VQL 18 P 50S ribosomal protein L19E 2238  
11 1VQK 18 P 50S ribosomal protein L19E 2238  
12 1VQN 19 P 50S ribosomal protein L19E 2238  
13 1YIJ 18 P 50S ribosomal protein L19E 2238  
14 1YI2 18 P 50S ribosomal protein L19E 2238  
15 1VQ9 18 P 50S ribosomal protein L19E 2238  
16 1VQ7 18 P 50S ribosomal protein L19E 2238  
17 3CCM 16 P 50S ribosomal protein L19e 2238  
18 1VQ5 18 P 50S ribosomal protein L19E 2238  
19 3CCJ 16 P 50S ribosomal protein L19e 2238  
20 3CC7 16 P 50S ribosomal protein L19e 2238  
21 1YIT 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
22 3CCE 16 P 50S ribosomal protein L19e 2238  
23 3G6E 17 P 50S ribosomal protein L19e 2238  
24 3CPW 17 O 50S ribosomal protein L19e 2238  
25 3CCU 16 P 50S ribosomal protein L19e 2238  
26 1VQ6 19 P 50S ribosomal protein L19E 2238  
27 1M90 18 Q RIBOSOMAL PROTEIN L19E 2238  
28 3CCL 16 P 50S ribosomal protein L19e 2238  
29 1YJW 22 P 50S RIBOSOMAL PROTEIN L19E 2238  
30 1YJ9 18 P 50S ribosomal protein L19E 2238  
31 3CD6 16 P 50S ribosomal protein L19e 2238  
32 3CCV 16 P 50S ribosomal protein L19e 2238  
33 3CC4 16 P 50S ribosomal protein L19e 2238  
34 2OTL 17 P 50S ribosomal protein L19e 2238  
35 3G71 17 P 50S ribosomal protein L19e 2238  
36 1FFK 15 M RIBOSOMAL PROTEIN L19 2238  
37 1VQ4 18 P 50S ribosomal protein L19E 2238  
38 1YJN 18 P 50S ribosomal protein L19E 2238  
39 3CMA 16 P 50S ribosomal protein L19e 2238  
40 3CCS 16 P 50S ribosomal protein L19e 2238  
41 3CCQ 16 P 50S ribosomal protein L19e 2238  
42 3I56 16 P 50S ribosomal protein L19e 2238  
43 3CCR 16 P 50S ribosomal protein L19e 2238  
44 2OTJ 17 P 50S ribosomal protein L19e 2238  
45 1KQS 19 O RIBOSOMAL PROTEIN L19E 2238  
46 3OW2 17 O 50S ribosomal protein L19e 2238  
47 3CXC 18 O RIBOSOMAL PROTEIN L19E 2238  
48 1QVG 18 O 50S ribosomal protein L19E 2238  
49 3CME 16 P 50S ribosomal protein L19e 2238  
50 2QEX 17 P 50S ribosomal protein L19e 2238  
51 1KC8 17 Q RIBOSOMAL PROTEIN L19E 2238  
52 1N8R 17 Q 50S ribosomal protein L19E 2238  
53 1Q81 18 Q 50S ribosomal protein L19E 2238  
54 1Q82 18 Q 50S ribosomal protein L19E 2238  
55 1QVF 18 O 50S ribosomal protein L19E 2238  
56 1NJI 17 Q 50S ribosomal protein L19E 2238  
57 1K73 17 Q RIBOSOMAL PROTEIN L19E 2238  
58 1K9M 17 Q RIBOSOMAL PROTEIN L19E 2238  
59 1KD1 17 Q RIBOSOMAL PROTEIN L19E 2238  
60 3I55 17 P 50S ribosomal protein L19e 2238  
61 1K8A 17 Q RIBOSOMAL PROTEIN L19E 2238  
62 1Q86 18 Q 50S ribosomal protein L19E 2238  
63 1M1K 17 Q RIBOSOMAL PROTEIN L19E 2238  
64 3G4S 17 P 50S ribosomal protein L19e 2238  
65 1W2B 20 O 50S RIBOSOMAL PROTEIN L19E 2238  
66 2QA4 18 P 50S ribosomal protein L19e 2238  
67 1Q7Y 18 Q 50S ribosomal protein L19E 2238  
68 4ADX 26 P RPL19E 187420  
 
Sequence Clusters for the Sequence Entities in PDB 1FFK
Entity #1: Chains: 0 - 23S RRNA rna, length: 2922 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: H - RIBOSOMAL PROTEIN L14 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 44 614
95% 36 68 454
90% 36 68 478
70% 36 68 513
50% 36 139 233
40% 36 139 261
30% 39 451 47
Entity #11: Chains: I - RIBOSOMAL PROTEIN L15E protein, length: 194 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47139
95% 1 1 33103
90% 1 1 31674
70% 36 68 505
50% 36 137 237
40% 36 137 270
30% 36 137 291
Entity #12: Chains: J - RIBOSOMAL PROTEIN L15 protein, length: 164 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 281
95% 36 74 398
90% 36 74 424
70% 36 74 450
50% 36 74 498
40% 36 74 532
30% 38 443 53
Entity #13: Chains: K - RIBOSOMAL PROTEIN L18 protein, length: 186 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 279
95% 36 74 396
90% 36 74 422
70% 36 74 448
50% 36 76 481
40% 36 76 513
30% 36 78 505
Entity #14: Chains: L - RIBOSOMAL PROTEIN L18E protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 318
95% 36 68 456
90% 36 68 481
70% 36 68 517
50% 36 70 541
40% 36 70 574
30% 36 70 573
Entity #15: Chains: M - RIBOSOMAL PROTEIN L19 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1627
95% 36 68 452
90% 36 68 476
70% 36 68 511
50% 36 68 568
40% 36 70 572
30% 36 71 556
Entity #16: Chains: N - RIBOSOMAL PROTEIN L21E protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 321
95% 36 68 458
90% 36 68 483
70% 36 68 519
50% 36 70 543
40% 36 70 577
30% 36 71 559
Entity #17: Chains: O - RIBOSOMAL PROTEIN L22 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 67 331
95% 36 68 450
90% 36 68 474
70% 36 68 509
50% 36 68 565
40% 36 68 600
30% 36 140 275
Entity #18: Chains: P - RIBOSOMAL PROTEIN L23 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 286
95% 36 74 401
90% 36 74 427
70% 36 74 453
50% 36 76 482
40% 36 78 496
30% 38 384 70
Entity #19: Chains: Q - RIBOSOMAL PROTEIN L24 protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 285
95% 36 74 400
90% 36 74 426
70% 36 74 452
50% 36 146 214
40% 36 146 244
30% 36 146 261
Entity #2: Chains: 9 - 5S RRNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: R - RIBOSOMAL PROTEIN L24E protein, length: 66 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 70 305
95% 34 70 434
90% 34 70 455
70% 34 70 487
50% 34 70 545
40% 34 70 579
30% 34 70 575
Entity #21: Chains: S - RIBOSOMAL PROTEIN L29 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 287
95% 36 74 402
90% 36 74 428
70% 36 74 454
50% 36 74 502
40% 36 74 535
30% 36 74 535
Entity #22: Chains: T - RIBOSOMAL PROTEIN L30 protein, length: 154 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 316
95% 36 68 451
90% 36 68 475
70% 36 68 510
50% 36 68 566
40% 36 70 571
30% 36 71 555
Entity #23: Chains: U - RIBOSOMAL PROTEIN L31E protein, length: 91 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 323
95% 36 68 460
90% 36 68 485
70% 36 68 521
50% 36 68 574
40% 36 68 606
30% 36 68 598
Entity #24: Chains: V - RIBOSOMAL PROTEIN L32E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 50055
95% 3 5 11092
90% 3 5 10911
70% 3 5 10324
50% 3 5 9274
40% 3 5 8461
30% 3 5 7425
Entity #25: Chains: W - RIBOSOMAL PROTEIN L37AE protein, length: 73 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55606
95% 1 1 38822
90% 1 1 37150
70% 3 21 2205
50% 7 30 1502
40% 7 92 407
30% 26 115 331
Entity #26: Chains: X - RIBOSOMAL PROTEIN L37E protein, length: 56 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 325
95% 36 68 462
90% 36 68 487
70% 36 68 523
50% 36 69 558
40% 36 69 593
30% 36 69 589
Entity #27: Chains: Y - RIBOSOMAL PROTEIN L39E protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56867
95% 36 68 463
90% 36 68 488
70% 36 68 524
50% 36 139 235
40% 36 139 263
30% 36 139 278
Entity #28: Chains: Z - RIBOSOMAL PROTEIN L44E protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 322
95% 36 68 459
90% 36 68 484
70% 36 68 520
50% 36 68 573
40% 36 68 605
30% 36 138 286
Entity #29: Chains: 1 - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 68 315
95% 36 68 449
90% 36 68 473
70% 36 68 508
50% 36 68 563
40% 36 138 266
30% 39 446 51
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1610
95% 35 67 467
90% 35 67 492
70% 35 67 530
50% 35 136 240
40% 35 138 265
30% 35 138 284
Entity #4: Chains: B - RIBOSOMAL PROTEIN L3 protein, length: 337 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41554
95% 36 74 391
90% 36 74 418
70% 36 74 445
50% 36 74 493
40% 36 143 247
30% 36 143 263
Entity #5: Chains: C - RIBOSOMAL PROTEIN L4 protein, length: 246 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 7 7592
95% 36 74 394
90% 36 74 420
70% 36 74 447
50% 36 74 495
40% 36 76 512
30% 36 77 510
Entity #6: Chains: D - RIBOSOMAL PROTEIN L5 protein, length: 176 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 280
95% 36 74 397
90% 36 74 423
70% 36 74 449
50% 36 74 496
40% 36 143 249
30% 36 143 265
Entity #7: Chains: E - RIBOSOMAL PROTEIN L7AE protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 21 1637
95% 3 21 2148
90% 36 68 480
70% 36 68 516
50% 51 97 290
40% 57 106 282
30% 57 108 301
Entity #8: Chains: F - RIBOSOMAL PROTEIN L10E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49088
95% 1 1 34200
90% 1 7 7884
70% 3 27 1628
50% 36 74 497
40% 36 78 492
30% 36 78 507
Entity #9: Chains: G - RIBOSOMAL PROTEIN L13 protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 74 282
95% 36 74 399
90% 36 74 425
70% 36 74 451
50% 36 74 500
40% 37 77 504
30% 37 78 508
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.